Wall clock time and date at job start Sun Mar 29 2020 21:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00163 * 2 1 4 4 H 1.48504 * 109.47096 * 239.99917 * 3 2 1 5 5 H 1.48497 * 109.47125 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46998 * 119.99977 * 3 2 1 7 7 C 1.37885 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00280 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99558 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46969 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.47287 * 179.97438 * 10 9 7 12 12 C 1.34802 * 117.00308 * 179.97438 * 11 10 9 13 13 O 1.21530 * 119.99731 * 359.97438 * 12 11 10 14 14 C 1.46947 * 120.00151 * 180.02562 * 12 11 10 15 15 C 1.32707 * 124.62679 * 180.02562 * 14 12 11 16 16 C 1.51117 * 110.74520 * 179.73244 * 15 14 12 17 17 C 1.54580 * 104.84100 * 16.87259 * 16 15 14 18 18 C 1.51113 * 124.63268 * 0.20055 * 14 12 11 19 19 H 0.96997 * 119.99502 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47676 * 59.99620 * 9 7 2 21 21 H 1.09008 * 109.47144 * 299.99317 * 9 7 2 22 22 H 1.09001 * 109.47247 * 59.99339 * 10 9 7 23 23 H 1.08999 * 109.47177 * 299.99553 * 10 9 7 24 24 H 1.08002 * 124.63149 * 0.02562 * 15 14 12 25 25 H 1.08994 * 110.36627 * 135.70946 * 16 15 14 26 26 H 1.08996 * 110.36627 * 258.03915 * 16 15 14 27 27 H 1.09006 * 110.97812 * 93.05679 * 17 16 15 28 28 H 1.09001 * 110.98262 * 216.85000 * 17 16 15 29 29 H 1.09006 * 110.51508 * 44.68411 * 18 14 12 30 30 H 1.09006 * 110.24335 * 282.46344 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 8 1.5192 -4.9195 0.0024 12 6 2.2533 -6.0501 0.0031 13 8 3.4670 -5.9865 0.0026 14 6 1.5862 -7.3594 0.0031 15 6 2.2168 -8.5271 0.0042 16 6 1.2277 -9.6696 0.0105 17 6 -0.1140 -9.0342 -0.4205 18 6 0.0884 -7.5600 -0.0018 19 1 -0.4849 0.8401 0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8904 22 1 2.8713 -3.6039 0.8922 23 1 2.8725 -3.6048 -0.8877 24 1 3.2903 -8.6448 0.0055 25 1 1.5300 -10.4370 -0.7019 26 1 1.1428 -10.0923 1.0116 27 1 -0.2571 -9.1178 -1.4979 28 1 -0.9489 -9.4818 0.1186 29 1 -0.3840 -6.8927 -0.7226 30 1 -0.3182 -7.3895 0.9951 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388368918.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:18 Heat of formation + Delta-G solvation = -90.534223 kcal Electronic energy + Delta-G solvation = -13184.174094 eV Core-core repulsion = 10751.120943 eV Total energy + Delta-G solvation = -2433.053151 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.99869 -38.10259 -35.94039 -33.31924 -30.46814 -29.46122 -28.48348 -25.12340 -22.67592 -21.12513 -20.69058 -18.58914 -17.21474 -16.45664 -16.06203 -15.88480 -15.35312 -14.55003 -13.61102 -13.26139 -12.84225 -12.59875 -12.34869 -12.05620 -11.77556 -11.40851 -11.25423 -11.19217 -11.02135 -10.71784 -10.68168 -10.22473 -9.61801 -9.60619 -9.29888 -9.04683 -8.42634 -6.08963 -4.13317 1.24997 3.24354 3.25004 3.31232 3.35162 3.40018 4.38870 4.42041 4.56298 4.87037 5.08751 5.16650 5.27479 5.51190 5.57971 5.66316 5.77899 5.88225 6.07128 6.11973 6.12755 6.29021 6.41126 6.66216 6.99807 7.57473 7.64336 7.88402 8.21479 8.29522 8.91983 9.50880 11.02563 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.072934 B = 0.005414 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.818525 B = 5170.087582 C = 5511.359300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.350 6.350 12 C 0.505 3.495 13 O -0.520 6.520 14 C -0.162 4.162 15 C -0.079 4.079 16 C -0.105 4.105 17 C -0.125 4.125 18 C -0.087 4.087 19 H 0.264 0.736 20 H 0.028 0.972 21 H 0.028 0.972 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.139 0.861 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.213 -16.970 -0.110 16.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.002 3.998 11 O -0.266 6.266 12 C 0.351 3.649 13 O -0.412 6.412 14 C -0.164 4.164 15 C -0.097 4.097 16 C -0.142 4.142 17 C -0.162 4.162 18 C -0.124 4.124 19 H 0.073 0.927 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.156 0.844 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.042 -16.765 -0.111 16.765 hybrid contribution 0.684 1.080 0.028 1.279 sum 0.642 -15.684 -0.084 15.698 Atomic orbital electron populations 1.69965 1.06096 1.27077 1.49733 1.24980 0.94914 0.99361 0.94852 0.86526 0.79479 0.82467 0.78783 1.20070 1.21113 1.20066 1.20950 0.93154 0.90149 1.52284 0.92307 1.19163 0.94176 0.88992 0.98874 1.23651 0.96418 0.78798 1.00931 1.86623 1.41843 1.15604 1.82558 1.20860 0.85484 0.85522 0.73051 1.90807 1.15159 1.88503 1.46717 1.21201 0.97295 0.90567 1.07292 1.24111 1.00111 0.93358 0.92145 1.21471 0.93666 0.96614 1.02407 1.22470 0.96988 0.95069 1.01699 1.21208 0.91449 0.96754 1.03005 0.92664 0.95340 0.95344 0.92324 0.92317 0.84360 0.90177 0.89538 0.90768 0.90431 0.89841 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.67 5.35 -27.88 -0.15 0.52 16 10 C 0.07 1.73 5.42 37.16 0.20 1.93 16 11 O -0.35 -7.43 10.04 -40.77 -0.41 -7.84 16 12 C 0.51 9.65 7.94 34.26 0.27 9.92 16 13 O -0.52 -11.06 16.56 -19.29 -0.32 -11.38 16 14 C -0.16 -2.36 6.09 -102.78 -0.63 -2.98 16 15 C -0.08 -0.92 10.43 -35.99 -0.38 -1.29 16 16 C -0.10 -0.87 6.80 -26.85 -0.18 -1.05 16 17 C -0.12 -1.08 7.16 -25.08 -0.18 -1.26 16 18 C -0.09 -1.04 6.56 -26.86 -0.18 -1.22 16 19 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 20 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 22 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 23 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 24 H 0.14 1.56 8.03 -52.49 -0.42 1.13 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 266.56 15.07 4.02 4.02 Total: -1.00 -31.58 266.56 -6.81 -38.40 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: -4.19 Total: -4.74 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.63 Total: -9.15 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.74 Total: -25.87 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.73 Total: -19.22 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.58 -6.81 -38.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388368918.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.138 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds