Wall clock time and date at job start Sun Mar 29 2020 21:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00163 * 2 1 4 4 H 1.48504 * 109.47096 * 239.99917 * 3 2 1 5 5 H 1.48497 * 109.47125 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46998 * 119.99977 * 3 2 1 7 7 C 1.37885 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00280 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99558 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46969 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.47287 * 179.97438 * 10 9 7 12 12 C 1.34802 * 117.00308 * 179.97438 * 11 10 9 13 13 O 1.21530 * 119.99731 * 359.97438 * 12 11 10 14 14 C 1.46947 * 120.00151 * 180.02562 * 12 11 10 15 15 C 1.32707 * 124.62679 * 180.02562 * 14 12 11 16 16 C 1.51117 * 110.74520 * 179.73244 * 15 14 12 17 17 C 1.54580 * 104.84100 * 16.87259 * 16 15 14 18 18 C 1.51113 * 124.63268 * 0.20055 * 14 12 11 19 19 H 0.96997 * 119.99502 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47676 * 59.99620 * 9 7 2 21 21 H 1.09008 * 109.47144 * 299.99317 * 9 7 2 22 22 H 1.09001 * 109.47247 * 59.99339 * 10 9 7 23 23 H 1.08999 * 109.47177 * 299.99553 * 10 9 7 24 24 H 1.08002 * 124.63149 * 0.02562 * 15 14 12 25 25 H 1.08994 * 110.36627 * 135.70946 * 16 15 14 26 26 H 1.08996 * 110.36627 * 258.03915 * 16 15 14 27 27 H 1.09006 * 110.97812 * 93.05679 * 17 16 15 28 28 H 1.09001 * 110.98262 * 216.85000 * 17 16 15 29 29 H 1.09006 * 110.51508 * 44.68411 * 18 14 12 30 30 H 1.09006 * 110.24335 * 282.46344 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 8 1.5192 -4.9195 0.0024 12 6 2.2533 -6.0501 0.0031 13 8 3.4670 -5.9865 0.0026 14 6 1.5862 -7.3594 0.0031 15 6 2.2168 -8.5271 0.0042 16 6 1.2277 -9.6696 0.0105 17 6 -0.1140 -9.0342 -0.4205 18 6 0.0884 -7.5600 -0.0018 19 1 -0.4849 0.8401 0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8904 22 1 2.8713 -3.6039 0.8922 23 1 2.8725 -3.6048 -0.8877 24 1 3.2903 -8.6448 0.0055 25 1 1.5300 -10.4370 -0.7019 26 1 1.1428 -10.0923 1.0116 27 1 -0.2571 -9.1178 -1.4979 28 1 -0.9489 -9.4818 0.1186 29 1 -0.3840 -6.8927 -0.7226 30 1 -0.3182 -7.3895 0.9951 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388368918.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:18 Heat of formation + Delta-G solvation = -108.849307 kcal Electronic energy + Delta-G solvation = -13184.968295 eV Core-core repulsion = 10751.120943 eV Total energy + Delta-G solvation = -2433.847353 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.48468 -39.15348 -37.58952 -35.46717 -32.44256 -30.53809 -29.38289 -27.12074 -24.20619 -22.80000 -21.79030 -19.90395 -18.77458 -18.11195 -17.65687 -17.57302 -16.54680 -16.27441 -15.07102 -15.01547 -14.40344 -13.84870 -13.60789 -13.22397 -13.17869 -12.95942 -12.66159 -12.59845 -12.56398 -12.11008 -11.99956 -11.86944 -11.57070 -11.52357 -11.38611 -10.62877 -10.01245 -8.28601 -6.42579 0.07550 1.39969 1.44154 1.51985 1.77690 1.88230 2.39552 3.05521 3.47606 3.63203 4.01460 4.16723 4.21453 4.22562 4.24654 4.62761 4.74553 4.79340 4.90053 4.99770 5.16279 5.21769 5.32667 5.38665 5.42172 5.42714 5.49947 5.70713 6.03858 6.66878 6.71595 7.27263 8.84001 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.072934 B = 0.005414 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.818525 B = 5170.087582 C = 5511.359300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.976 3.024 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.554 4.554 8 H 0.065 0.935 9 C 0.032 3.968 10 C 0.089 3.911 11 O -0.361 6.361 12 C 0.501 3.499 13 O -0.551 6.551 14 C -0.209 4.209 15 C -0.040 4.040 16 C -0.100 4.100 17 C -0.116 4.116 18 C -0.088 4.088 19 H 0.269 0.731 20 H 0.006 0.994 21 H 0.006 0.994 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.142 0.858 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.276 -18.452 -0.079 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.592 4.592 8 H 0.083 0.917 9 C -0.005 4.005 10 C 0.016 3.984 11 O -0.277 6.277 12 C 0.349 3.651 13 O -0.444 6.444 14 C -0.210 4.210 15 C -0.058 4.058 16 C -0.137 4.137 17 C -0.154 4.154 18 C -0.125 4.125 19 H 0.078 0.922 20 H 0.025 0.975 21 H 0.025 0.975 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.160 0.840 25 H 0.127 0.873 26 H 0.129 0.871 27 H 0.098 0.902 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.443 -18.274 -0.081 18.279 hybrid contribution 0.537 1.400 0.021 1.500 sum 0.980 -16.873 -0.060 16.902 Atomic orbital electron populations 1.70090 1.07862 1.28426 1.50157 1.25984 0.95862 1.03456 0.93898 0.85345 0.78179 0.77256 0.79328 1.19040 1.20285 1.19024 1.21340 0.93700 0.91204 1.52907 0.91703 1.18972 0.94281 0.90578 0.96660 1.23186 0.95177 0.79127 1.00885 1.86614 1.42133 1.15741 1.83214 1.21743 0.85419 0.86133 0.71799 1.90773 1.16297 1.88786 1.48557 1.21236 0.98918 0.88751 1.12124 1.24628 1.01088 0.93569 0.86508 1.21623 0.91974 0.95550 1.04514 1.22492 0.98142 0.92278 1.02452 1.21248 0.89570 0.99102 1.02621 0.92249 0.97544 0.97537 0.92287 0.92301 0.84006 0.87339 0.87113 0.90153 0.88136 0.91685 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.98 44.19 29.54 68.60 2.03 46.22 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.55 -32.28 9.11 25.60 0.23 -32.04 16 8 H 0.06 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.03 1.81 5.35 29.85 0.16 1.97 16 10 C 0.09 4.31 5.42 71.98 0.39 4.70 16 11 O -0.36 -15.94 10.04 -57.13 -0.57 -16.52 16 12 C 0.50 19.59 7.94 70.10 0.56 20.15 16 13 O -0.55 -23.86 16.56 19.74 0.33 -23.54 16 14 C -0.21 -5.96 6.09 -18.62 -0.11 -6.07 16 15 C -0.04 -0.82 10.43 24.65 0.26 -0.57 16 16 C -0.10 -1.22 6.80 30.52 0.21 -1.01 16 17 C -0.12 -1.63 7.16 31.67 0.23 -1.41 16 18 C -0.09 -2.04 6.56 30.51 0.20 -1.84 16 19 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 20 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 21 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 22 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 23 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 24 H 0.14 2.85 8.03 -2.91 -0.02 2.83 16 25 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -69.63 266.56 5.75 -63.87 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: 1.11 Total: 1.24 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 2.58 Total: -15.26 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.28 Total: -56.01 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -0.25 Total: -40.05 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -69.63 5.75 -63.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388368918.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.977 kcal (2) G-P(sol) polarization free energy of solvation -69.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds