Wall clock time and date at job start Sun Mar 29 2020 21:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46904 * 109.47015 * 119.99841 * 2 1 3 13 13 C 1.46892 * 111.00175 * 58.95371 * 12 2 1 14 14 C 1.46904 * 110.99976 * 294.99842 * 12 2 1 15 15 N 1.46501 * 109.47310 * 189.99872 * 14 12 2 16 16 C 1.35496 * 126.97846 * 269.69006 * 15 14 12 17 17 N 1.30518 * 107.30401 * 179.83331 * 16 15 14 18 18 N 1.28598 * 109.67477 * 0.43851 * 17 16 15 19 19 C 1.30527 * 109.67135 * 359.72332 * 18 17 16 20 20 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 21 21 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 22 22 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.09006 * 109.46847 * 59.99941 * 13 12 2 25 25 H 1.08994 * 109.47472 * 179.97438 * 13 12 2 26 26 H 1.09001 * 109.47178 * 300.00161 * 13 12 2 27 27 H 1.08998 * 109.47075 * 310.00200 * 14 12 2 28 28 H 1.09002 * 109.46658 * 69.99973 * 14 12 2 29 29 H 1.07996 * 126.34976 * 359.97438 * 16 15 14 30 30 H 1.07994 * 126.34537 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0197 -0.6925 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6487 0.0392 2.4181 15 7 2.3478 -0.5404 3.5677 16 6 1.9086 -1.5409 4.3690 17 7 2.8328 -1.7543 5.2655 18 7 3.8136 -0.9441 5.0777 19 6 3.5622 -0.1809 4.0490 20 1 -0.3633 0.5138 0.8899 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.9028 -0.5285 -4.4375 24 1 1.8763 -2.6150 0.3648 25 1 1.9060 -2.5657 2.1436 26 1 0.4385 -2.0742 1.2640 27 1 1.9297 1.0871 2.3125 28 1 0.5722 -0.0344 2.5726 29 1 0.9691 -2.0661 4.2806 30 1 4.2032 0.5938 3.6550 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388643665.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:50 Heat of formation + Delta-G solvation = 105.012448 kcal Electronic energy + Delta-G solvation = -14057.525894 eV Core-core repulsion = 11697.537785 eV Total energy + Delta-G solvation = -2359.988109 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.85219 -37.97139 -34.27445 -32.42147 -30.39172 -29.79376 -27.26078 -25.49943 -24.11666 -21.99858 -21.79171 -19.79746 -17.36428 -16.87002 -16.03123 -15.29934 -14.91859 -14.65719 -14.34892 -14.04827 -13.43935 -12.94297 -12.46725 -11.92992 -11.71676 -11.59703 -11.34868 -11.11269 -10.69361 -10.28540 -10.25142 -10.19891 -9.69533 -9.31924 -9.18427 -8.77872 -7.84492 -6.24517 -4.25585 2.02336 2.72854 3.10229 3.10592 3.18144 3.24633 4.21106 4.39475 4.68917 4.72855 4.93322 5.05992 5.21504 5.49503 5.69928 5.85150 5.94169 5.95929 6.04696 6.21353 6.31230 6.39243 6.63516 6.83962 7.00700 7.26809 7.54830 7.65104 8.39663 8.81665 8.90757 9.34576 10.88106 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.061054 B = 0.007923 C = 0.007742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.497502 B = 3533.370639 C = 3615.730822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.189 3.811 3 H 0.045 0.955 4 C -0.511 4.511 5 H 0.084 0.916 6 C 0.073 3.927 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.279 1.279 10 H -0.268 1.268 11 H -0.294 1.294 12 N -0.535 5.535 13 C 0.026 3.974 14 C 0.265 3.735 15 N -0.462 5.462 16 C 0.149 3.851 17 N -0.306 5.306 18 N -0.312 5.312 19 C 0.169 3.831 20 H 0.028 0.972 21 H 0.051 0.949 22 H 0.060 0.940 23 H 0.267 0.733 24 H 0.089 0.911 25 H 0.047 0.953 26 H 0.026 0.974 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.210 0.790 30 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.344 3.341 9.480 10.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.081 3.919 3 H 0.063 0.937 4 C -0.549 4.549 5 H 0.102 0.898 6 C -0.130 4.130 7 N -0.530 5.530 8 Si 0.717 3.283 9 H -0.206 1.206 10 H -0.193 1.193 11 H -0.221 1.221 12 N -0.259 5.259 13 C -0.122 4.122 14 C 0.052 3.948 15 N -0.153 5.153 16 C -0.140 4.140 17 N -0.146 5.146 18 N -0.151 5.151 19 C -0.120 4.120 20 H 0.047 0.953 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.107 0.893 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.123 0.877 28 H 0.085 0.915 29 H 0.227 0.773 30 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -3.109 2.733 10.399 11.193 hybrid contribution -2.272 1.383 -1.547 3.077 sum -5.381 4.116 8.852 11.147 Atomic orbital electron populations 1.22894 1.01233 1.01500 0.99369 1.19776 0.88949 0.95366 0.87773 0.93729 1.20839 1.32349 1.14188 0.87529 0.89822 1.24911 0.95752 0.96585 0.95728 1.69863 1.45040 1.40095 0.98016 0.86894 0.80506 0.83683 0.77261 1.20635 1.19349 1.22114 1.62132 1.60090 1.02885 1.00808 1.22398 0.97299 0.89870 1.02597 1.22437 0.94146 0.96741 0.81432 1.46625 1.16468 1.28145 1.24054 1.26345 1.02680 0.93266 0.91707 1.74179 0.99099 1.19406 1.21939 1.74205 1.19901 1.05465 1.15566 1.26452 0.87487 1.02944 0.95094 0.95269 0.93070 0.92085 0.92333 0.89280 0.93413 0.95596 0.87657 0.91532 0.77318 0.76840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.56 7.98 37.16 0.30 -3.26 16 2 C 0.19 3.88 1.93 -68.86 -0.13 3.74 16 3 H 0.04 0.94 7.09 -51.93 -0.37 0.57 16 4 C -0.51 -13.11 8.52 -34.44 -0.29 -13.40 16 5 H 0.08 2.39 6.99 -52.49 -0.37 2.02 16 6 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 7 N -0.89 -25.80 13.96 55.43 0.77 -25.03 16 8 Si 0.89 20.13 24.37 -169.99 -4.14 15.99 16 9 H -0.28 -6.21 6.87 56.52 0.39 -5.82 16 10 H -0.27 -5.70 6.53 56.52 0.37 -5.33 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 N -0.53 -9.49 4.88 -240.19 -1.17 -10.66 16 13 C 0.03 0.45 8.69 60.06 0.52 0.97 16 14 C 0.27 3.61 5.37 -63.31 -0.34 3.27 16 15 N -0.46 -6.41 2.69 -123.27 -0.33 -6.74 16 16 C 0.15 2.06 10.99 -89.95 -0.99 1.07 16 17 N -0.31 -5.18 12.21 29.69 0.36 -4.81 16 18 N -0.31 -5.32 12.21 29.69 0.36 -4.96 16 19 C 0.17 2.42 12.74 -89.94 -1.15 1.27 16 20 H 0.03 0.44 6.75 -51.93 -0.35 0.09 16 21 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 22 H 0.06 1.12 6.38 -51.93 -0.33 0.79 16 23 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.09 1.76 6.53 -51.93 -0.34 1.42 16 25 H 0.05 0.75 6.20 -51.93 -0.32 0.42 16 26 H 0.03 0.40 6.28 -51.93 -0.33 0.08 16 27 H 0.11 1.29 8.00 -51.93 -0.42 0.87 16 28 H 0.07 0.81 6.94 -51.93 -0.36 0.45 16 29 H 0.21 2.15 8.06 -52.49 -0.42 1.72 16 30 H 0.22 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 241.37 15.07 3.64 3.64 Total: -1.00 -30.42 241.37 -6.07 -36.48 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -3.38 Total: 0.55 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -2.18 Total: -4.47 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.01 Total: -52.20 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.14 Total: 15.99 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.42 -6.07 -36.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388643665.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.497 kcal (2) G-P(sol) polarization free energy of solvation -30.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds