Wall clock time and date at job start Sun Mar 29 2020 21:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47305 * 2 1 4 4 C 1.50698 * 109.47280 * 120.00071 * 2 1 3 5 5 H 1.07998 * 119.99675 * 119.99556 * 4 2 1 6 6 C 1.37873 * 120.00054 * 300.00463 * 4 2 1 7 7 N 1.31518 * 119.99991 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99874 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47414 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47345 * 120.00070 * 8 6 4 11 11 H 1.48511 * 109.47147 * 239.99557 * 8 6 4 12 12 N 1.46899 * 109.47168 * 240.00376 * 2 1 3 13 13 C 1.46904 * 111.00381 * 84.99789 * 12 2 1 14 14 C 1.50700 * 109.47406 * 180.02562 * 13 12 2 15 15 C 1.39668 * 127.04935 * 94.99819 * 14 13 12 16 16 N 1.31384 * 105.89833 * 179.73924 * 15 14 13 17 17 N 1.28601 * 108.71746 * 0.26236 * 16 15 14 18 18 C 1.46498 * 124.61656 * 179.97438 * 17 16 15 19 19 N 1.28599 * 110.76175 * 0.02562 * 17 16 15 20 20 H 1.09006 * 109.47082 * 59.99777 * 1 2 3 21 21 H 1.08995 * 109.46961 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46851 * 299.99824 * 1 2 3 23 23 H 0.96994 * 119.99684 * 180.02562 * 7 6 4 24 24 H 1.00904 * 111.00438 * 208.95460 * 12 2 1 25 25 H 1.09009 * 109.46462 * 60.00143 * 13 12 2 26 26 H 1.09001 * 109.46962 * 300.00633 * 13 12 2 27 27 H 1.08002 * 127.05347 * 0.02562 * 15 14 13 28 28 H 1.09002 * 109.47039 * 89.97905 * 18 17 16 29 29 H 1.08999 * 109.47178 * 209.97740 * 18 17 16 30 30 H 1.09002 * 109.47313 * 329.98129 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9434 0.8301 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.1455 -2.2878 3.6036 10 1 3.1466 -0.1876 4.8165 11 1 1.1660 -1.5869 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3470 14 6 2.5873 -0.5217 -3.5561 15 6 1.8190 -1.1240 -4.5549 16 7 2.6762 -1.6449 -5.4034 17 7 3.8684 -1.4047 -4.9855 18 6 5.0918 -1.8307 -5.6697 19 7 3.8404 -0.7405 -3.8847 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.7094 1.1616 3.4844 24 1 2.9173 -1.1205 -1.0288 25 1 2.7589 1.0463 -2.1182 26 1 1.0870 0.6165 -2.5525 27 1 0.7412 -1.1515 -4.6193 28 1 5.4041 -1.0569 -6.3711 29 1 5.8803 -1.9950 -4.9353 30 1 4.9012 -2.7570 -6.2117 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388684790.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:33 Heat of formation + Delta-G solvation = 85.494409 kcal Electronic energy + Delta-G solvation = -13458.974485 eV Core-core repulsion = 11098.140010 eV Total energy + Delta-G solvation = -2360.834475 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.46463 -37.88013 -35.26864 -34.09397 -33.35712 -30.91947 -28.53815 -27.30883 -25.83982 -23.23590 -21.98449 -21.54015 -18.71177 -18.04734 -17.74406 -16.86305 -15.95678 -15.57605 -15.47031 -15.22303 -14.31426 -13.85772 -13.69151 -13.57545 -13.03868 -12.76137 -12.69964 -12.59443 -12.17524 -12.03907 -11.95795 -11.77275 -11.24213 -10.86673 -10.56350 -10.09352 -9.07871 -8.11956 -6.25547 0.81965 1.42031 1.43238 1.45280 1.55815 1.56711 2.43290 3.16209 3.16867 3.78335 3.89763 4.28438 4.32414 4.36893 4.55472 4.64899 4.73661 4.88442 5.13115 5.14799 5.25106 5.26533 5.51428 5.68086 5.82029 5.89296 6.25900 6.44515 6.73655 6.96581 7.35712 7.44426 8.93832 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.053036 B = 0.006390 C = 0.005925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.814625 B = 4380.531099 C = 4724.684777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.215 3.785 3 H -0.025 1.025 4 C -0.538 4.538 5 H 0.054 0.946 6 C 0.015 3.985 7 N -0.915 5.915 8 Si 0.962 3.038 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.278 1.278 12 N -0.679 5.679 13 C 0.152 3.848 14 C 0.002 3.998 15 C -0.015 4.015 16 N -0.306 5.306 17 N -0.161 5.161 18 C 0.096 3.904 19 N -0.309 5.309 20 H 0.031 0.969 21 H 0.028 0.972 22 H 0.057 0.943 23 H 0.263 0.737 24 H 0.329 0.671 25 H 0.028 0.972 26 H 0.099 0.901 27 H 0.220 0.780 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.097 -3.425 -13.966 15.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 H -0.007 1.007 4 C -0.577 4.577 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.787 3.213 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.204 1.204 12 N -0.310 5.310 13 C 0.021 3.979 14 C -0.160 4.160 15 C -0.196 4.196 16 N -0.148 5.148 17 N -0.063 5.063 18 C -0.042 4.042 19 N -0.153 5.153 20 H 0.050 0.950 21 H 0.047 0.953 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.145 0.855 25 H 0.046 0.954 26 H 0.117 0.883 27 H 0.236 0.764 28 H 0.125 0.875 29 H 0.130 0.870 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.578 -3.972 -14.681 16.200 hybrid contribution 0.226 0.572 1.604 1.718 sum 5.805 -3.400 -13.076 14.705 Atomic orbital electron populations 1.21546 0.97068 0.99088 0.99517 1.18974 0.93181 0.90926 0.86270 1.00720 1.21585 1.31683 1.12632 0.91755 0.92737 1.25686 0.95168 0.95690 1.01876 1.70019 1.37380 1.23915 1.24147 0.85456 0.78143 0.78529 0.79156 1.19451 1.20545 1.20397 1.60724 1.32125 1.32937 1.05184 1.20087 1.00219 0.91830 0.85798 1.23165 0.88657 1.04160 1.00030 1.24990 1.02202 1.00183 0.92237 1.73975 0.91868 1.22325 1.26625 1.48420 1.07003 1.36544 1.14377 1.22537 0.79867 1.03530 0.98242 1.73971 1.23959 1.14147 1.03253 0.95005 0.95269 0.92424 0.92765 0.85462 0.95366 0.88301 0.76361 0.87484 0.87004 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.60 9.19 71.98 0.66 -4.93 16 2 C 0.21 11.02 2.60 44.17 0.11 11.14 16 3 H -0.02 -1.39 7.80 -2.38 -0.02 -1.41 16 4 C -0.54 -30.03 8.59 25.60 0.22 -29.81 16 5 H 0.05 3.03 7.62 -2.91 -0.02 3.01 16 6 C 0.02 0.84 5.30 84.65 0.45 1.29 16 7 N -0.92 -52.62 11.32 21.45 0.24 -52.38 16 8 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 12 N -0.68 -29.77 6.29 -499.44 -3.14 -32.91 16 13 C 0.15 5.61 6.07 85.56 0.52 6.13 16 14 C 0.00 0.06 6.86 42.97 0.30 0.36 16 15 C -0.01 -0.43 12.16 85.11 1.03 0.60 16 16 N -0.31 -8.90 12.05 -56.87 -0.69 -9.58 16 17 N -0.16 -4.44 4.35 -206.55 -0.90 -5.34 16 18 C 0.10 1.44 11.57 127.77 1.48 2.91 16 19 N -0.31 -10.30 12.05 -47.25 -0.57 -10.87 16 20 H 0.03 1.35 7.45 -2.38 -0.02 1.33 16 21 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 23 H 0.26 14.29 8.31 -92.71 -0.77 13.51 16 24 H 0.33 14.86 8.22 -89.69 -0.74 14.12 16 25 H 0.03 1.09 8.06 -2.38 -0.02 1.07 16 26 H 0.10 3.36 7.44 -2.39 -0.02 3.34 16 27 H 0.22 5.06 8.06 -2.91 -0.02 5.03 16 28 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -66.19 260.85 2.15 -64.04 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.40 Total: 13.51 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 4.77 Total: -12.32 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -5.05 Total: -111.08 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -66.19 2.15 -64.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388684790.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.534 kcal (2) G-P(sol) polarization free energy of solvation -66.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds