Wall clock time and date at job start Sun Mar 29 2020 21:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30833 * 125.96285 * 2 1 4 4 C 1.33242 * 109.82985 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.52972 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.46908 * 90.00213 * 5 4 3 7 7 C 1.46906 * 111.00172 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.46389 * 324.99645 * 7 6 5 9 9 C 1.52997 * 109.47302 * 84.99810 * 7 6 5 10 10 C 1.50697 * 109.47180 * 205.00376 * 7 6 5 11 11 H 1.07998 * 120.00039 * 359.97438 * 10 7 6 12 12 C 1.37880 * 119.99815 * 179.97438 * 10 7 6 13 13 N 1.31508 * 119.99915 * 359.97438 * 12 10 7 14 14 Si 1.86805 * 119.99777 * 179.97438 * 12 10 7 15 15 H 1.48497 * 109.47155 * 89.99872 * 14 12 10 16 16 H 1.48499 * 109.47102 * 210.00327 * 14 12 10 17 17 H 1.48499 * 109.46909 * 330.00049 * 14 12 10 18 18 N 1.30720 * 108.94689 * 0.26656 * 4 3 2 19 19 N 1.34436 * 125.96065 * 180.02562 * 2 1 3 20 20 H 0.97003 * 126.81994 * 359.97438 * 19 2 1 21 21 H 1.09000 * 109.47101 * 89.97492 * 1 2 3 22 22 H 1.08998 * 109.47292 * 209.97787 * 1 2 3 23 23 H 1.09002 * 109.46758 * 329.97432 * 1 2 3 24 24 H 1.09005 * 109.46789 * 330.00617 * 5 4 3 25 25 H 1.09001 * 109.47726 * 210.00407 * 5 4 3 26 26 H 1.00899 * 111.00259 * 303.95552 * 6 5 4 27 27 H 1.09002 * 109.47153 * 180.02562 * 9 7 6 28 28 H 1.09001 * 109.46832 * 60.00356 * 9 7 6 29 29 H 1.09004 * 109.47261 * 300.00337 * 9 7 6 30 30 H 0.97001 * 119.99839 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7373 1.6235 -0.0013 6 7 5.1220 1.9274 1.3834 7 6 6.2735 2.8388 1.4220 8 1 6.9412 2.6158 0.5899 9 6 5.7841 4.2840 1.3102 10 6 7.0137 2.6582 2.7222 11 1 6.6636 1.9387 3.4475 12 6 8.1381 3.4116 2.9857 13 7 8.5647 4.2873 2.1023 14 14 9.0552 3.1882 4.5977 15 1 10.0974 2.1432 4.4336 16 1 9.6966 4.4706 4.9841 17 1 8.1007 2.7733 5.6569 18 7 3.6194 -0.6169 -0.0067 19 7 2.2964 -1.0882 -0.0005 20 1 2.0092 -2.0147 -0.0006 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3634 -0.8902 0.5135 23 1 -0.3633 0.8898 0.5142 24 1 4.4699 2.5469 -0.5151 25 1 5.5741 1.1508 -0.5155 26 1 4.3431 2.3074 1.9001 27 1 6.6385 4.9602 1.3384 28 1 5.1163 4.5069 2.1424 29 1 5.2486 4.4146 0.3698 30 1 9.3559 4.8170 2.2875 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388756816.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:38 Heat of formation + Delta-G solvation = 80.019012 kcal Electronic energy + Delta-G solvation = -13402.459266 eV Core-core repulsion = 11041.387360 eV Total energy + Delta-G solvation = -2361.071906 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.92949 -36.10069 -33.35855 -32.27042 -31.93957 -29.07587 -27.75986 -25.21180 -24.66172 -21.29543 -20.19656 -20.07497 -17.72082 -16.28803 -15.65453 -14.81599 -14.58576 -13.98581 -13.70457 -13.07324 -13.03337 -12.86987 -12.28526 -11.73621 -11.61961 -11.41579 -10.87934 -10.74277 -10.50769 -10.07763 -10.02388 -9.83148 -9.78606 -9.28287 -8.96271 -8.30451 -7.21833 -5.92965 -3.95693 1.74350 2.76164 3.06754 3.37833 3.43417 3.48339 4.09466 4.50055 4.73726 4.89841 5.19228 5.33072 5.38796 5.58414 5.62393 6.11968 6.14145 6.48037 6.64322 6.77177 6.92626 7.14088 7.15580 7.38998 7.80129 7.93306 8.28880 8.32554 8.56806 8.64374 9.11084 9.69101 11.14242 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.058386 B = 0.006152 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.453281 B = 4550.560315 C = 4719.934618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.271 3.729 3 N -0.538 5.538 4 C 0.247 3.753 5 C 0.149 3.851 6 N -0.676 5.676 7 C 0.212 3.788 8 H 0.036 0.964 9 C -0.169 4.169 10 C -0.493 4.493 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.898 3.102 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.275 1.275 18 N -0.301 5.301 19 N -0.491 5.491 20 H 0.436 0.564 21 H 0.088 0.912 22 H 0.080 0.920 23 H 0.096 0.904 24 H 0.050 0.950 25 H 0.088 0.912 26 H 0.330 0.670 27 H 0.090 0.910 28 H 0.029 0.971 29 H 0.007 0.993 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.460 -7.548 -4.844 17.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.008 4.008 3 N -0.268 5.268 4 C -0.036 4.036 5 C 0.017 3.983 6 N -0.307 5.307 7 C 0.105 3.895 8 H 0.054 0.946 9 C -0.229 4.229 10 C -0.532 4.532 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.727 3.273 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.200 1.200 18 N -0.129 5.129 19 N -0.209 5.209 20 H 0.280 0.720 21 H 0.107 0.893 22 H 0.098 0.902 23 H 0.115 0.885 24 H 0.068 0.932 25 H 0.106 0.894 26 H 0.147 0.853 27 H 0.108 0.892 28 H 0.048 0.952 29 H 0.027 0.973 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.316 -7.990 -4.809 16.257 hybrid contribution -0.261 0.098 0.588 0.651 sum -13.577 -7.892 -4.221 16.261 Atomic orbital electron populations 1.20333 0.84040 1.04781 1.04175 1.24349 0.96461 0.83209 0.96747 1.70378 1.01819 1.29479 1.25107 1.24505 0.93004 0.90166 0.95934 1.20194 0.90088 0.93777 0.94249 1.60840 1.10107 1.51286 1.08486 1.19213 0.86622 0.85706 0.97978 0.94563 1.22434 1.01238 1.03004 0.96203 1.21136 1.09444 1.20372 1.02239 0.91962 1.24937 0.97269 0.95280 0.97028 1.69884 1.24454 1.24609 1.34820 0.86491 0.79837 0.77209 0.83791 1.20782 1.21431 1.19991 1.78112 0.95615 1.12840 1.26369 1.48046 1.04793 1.09704 1.58362 0.71977 0.89325 0.90152 0.88490 0.93226 0.89370 0.85331 0.89185 0.95223 0.97350 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.51 36.00 0.38 -0.14 16 2 C 0.27 3.49 8.24 -155.69 -1.28 2.20 16 3 N -0.54 -9.21 11.19 -8.16 -0.09 -9.30 16 4 C 0.25 4.65 7.65 -156.85 -1.20 3.45 16 5 C 0.15 2.98 6.11 -4.98 -0.03 2.95 16 6 N -0.68 -15.47 6.22 -109.22 -0.68 -16.15 16 7 C 0.21 5.50 2.57 -68.86 -0.18 5.32 16 8 H 0.04 1.01 7.80 -51.93 -0.40 0.61 16 9 C -0.17 -4.18 8.94 37.16 0.33 -3.84 16 10 C -0.49 -14.04 8.84 -34.44 -0.30 -14.34 16 11 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 12 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 13 N -0.90 -26.03 11.32 55.43 0.63 -25.40 16 14 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 18 N -0.30 -5.39 12.80 32.42 0.41 -4.98 16 19 N -0.49 -6.34 7.45 32.62 0.24 -6.09 16 20 H 0.44 3.71 8.96 -182.33 -1.63 2.08 16 21 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.97 7.44 -51.93 -0.39 0.58 16 25 H 0.09 1.76 8.06 -51.93 -0.42 1.34 16 26 H 0.33 7.42 8.46 -39.29 -0.33 7.09 16 27 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 28 H 0.03 0.70 8.13 -51.93 -0.42 0.28 16 29 H 0.01 0.17 7.45 -51.93 -0.39 -0.22 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 260.91 15.07 3.93 3.93 Total: -1.00 -32.85 260.91 -8.07 -40.91 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.11 Total: 3.09 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -2.38 Total: -2.93 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: 0.51 Total: -61.93 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.85 -8.07 -40.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388756816.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.931 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds