Wall clock time and date at job start Sun Mar 29 2020 21:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30833 * 125.96285 * 2 1 4 4 C 1.33242 * 109.82985 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.52972 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.46908 * 90.00213 * 5 4 3 7 7 C 1.46906 * 111.00172 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.46389 * 324.99645 * 7 6 5 9 9 C 1.52997 * 109.47302 * 84.99810 * 7 6 5 10 10 C 1.50697 * 109.47180 * 205.00376 * 7 6 5 11 11 H 1.07998 * 120.00039 * 359.97438 * 10 7 6 12 12 C 1.37880 * 119.99815 * 179.97438 * 10 7 6 13 13 N 1.31508 * 119.99915 * 359.97438 * 12 10 7 14 14 Si 1.86805 * 119.99777 * 179.97438 * 12 10 7 15 15 H 1.48497 * 109.47155 * 89.99872 * 14 12 10 16 16 H 1.48499 * 109.47102 * 210.00327 * 14 12 10 17 17 H 1.48499 * 109.46909 * 330.00049 * 14 12 10 18 18 N 1.30720 * 108.94689 * 0.26656 * 4 3 2 19 19 N 1.34436 * 125.96065 * 180.02562 * 2 1 3 20 20 H 0.97003 * 126.81994 * 359.97438 * 19 2 1 21 21 H 1.09000 * 109.47101 * 89.97492 * 1 2 3 22 22 H 1.08998 * 109.47292 * 209.97787 * 1 2 3 23 23 H 1.09002 * 109.46758 * 329.97432 * 1 2 3 24 24 H 1.09005 * 109.46789 * 330.00617 * 5 4 3 25 25 H 1.09001 * 109.47726 * 210.00407 * 5 4 3 26 26 H 1.00899 * 111.00259 * 303.95552 * 6 5 4 27 27 H 1.09002 * 109.47153 * 180.02562 * 9 7 6 28 28 H 1.09001 * 109.46832 * 60.00356 * 9 7 6 29 29 H 1.09004 * 109.47261 * 300.00337 * 9 7 6 30 30 H 0.97001 * 119.99839 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7373 1.6235 -0.0013 6 7 5.1220 1.9274 1.3834 7 6 6.2735 2.8388 1.4220 8 1 6.9412 2.6158 0.5899 9 6 5.7841 4.2840 1.3102 10 6 7.0137 2.6582 2.7222 11 1 6.6636 1.9387 3.4475 12 6 8.1381 3.4116 2.9857 13 7 8.5647 4.2873 2.1023 14 14 9.0552 3.1882 4.5977 15 1 10.0974 2.1432 4.4336 16 1 9.6966 4.4706 4.9841 17 1 8.1007 2.7733 5.6569 18 7 3.6194 -0.6169 -0.0067 19 7 2.2964 -1.0882 -0.0005 20 1 2.0092 -2.0147 -0.0006 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3634 -0.8902 0.5135 23 1 -0.3633 0.8898 0.5142 24 1 4.4699 2.5469 -0.5151 25 1 5.5741 1.1508 -0.5155 26 1 4.3431 2.3074 1.9001 27 1 6.6385 4.9602 1.3384 28 1 5.1163 4.5069 2.1424 29 1 5.2486 4.4146 0.3698 30 1 9.3559 4.8170 2.2875 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388756816.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:37 Heat of formation + Delta-G solvation = 55.654251 kcal Electronic energy + Delta-G solvation = -13403.515801 eV Core-core repulsion = 11041.387360 eV Total energy + Delta-G solvation = -2362.128441 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.11451 -37.95781 -35.00283 -33.62626 -33.32981 -30.75527 -28.84517 -27.26393 -26.42018 -22.41095 -22.18870 -21.42641 -18.87488 -18.34151 -16.95397 -16.71292 -16.16599 -15.38361 -15.22621 -14.68699 -14.21295 -13.75782 -13.67650 -13.49399 -13.21890 -12.84965 -12.71705 -12.71010 -12.38153 -12.14729 -11.92899 -11.15087 -11.08148 -11.04288 -10.48869 -10.47128 -9.06545 -8.08501 -6.19529 0.60384 1.44685 1.45196 1.56222 1.75416 1.80817 2.46229 3.03168 3.19871 3.60032 3.77201 4.00223 4.46877 4.53764 4.73712 4.74737 4.78075 4.92913 5.07256 5.08967 5.30004 5.33360 5.39666 5.69928 5.80569 6.24487 6.27338 6.58757 6.69659 6.92035 7.12038 7.49620 8.97372 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.058386 B = 0.006152 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.453281 B = 4550.560315 C = 4719.934618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.285 3.715 3 N -0.573 5.573 4 C 0.231 3.769 5 C 0.155 3.845 6 N -0.679 5.679 7 C 0.217 3.783 8 H 0.010 0.990 9 C -0.156 4.156 10 C -0.517 4.517 11 H 0.051 0.949 12 C 0.011 3.989 13 N -0.920 5.920 14 Si 0.963 3.037 15 H -0.278 1.278 16 H -0.281 1.281 17 H -0.271 1.271 18 N -0.333 5.333 19 N -0.475 5.475 20 H 0.455 0.545 21 H 0.112 0.888 22 H 0.114 0.886 23 H 0.098 0.902 24 H 0.053 0.947 25 H 0.080 0.920 26 H 0.332 0.668 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.028 0.972 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.124 -8.420 -4.450 18.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.007 3.993 3 N -0.304 5.304 4 C -0.053 4.053 5 C 0.023 3.977 6 N -0.310 5.310 7 C 0.109 3.891 8 H 0.028 0.972 9 C -0.215 4.215 10 C -0.556 4.556 11 H 0.069 0.931 12 C -0.188 4.188 13 N -0.561 5.561 14 Si 0.788 3.212 15 H -0.203 1.203 16 H -0.206 1.206 17 H -0.196 1.196 18 N -0.163 5.163 19 N -0.196 5.196 20 H 0.304 0.696 21 H 0.130 0.870 22 H 0.133 0.867 23 H 0.117 0.883 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.149 0.851 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.012 -8.900 -4.424 18.004 hybrid contribution 0.145 0.294 0.408 0.523 sum -14.868 -8.606 -4.016 17.642 Atomic orbital electron populations 1.20653 0.79575 1.06563 1.06194 1.25365 0.98395 0.81912 0.93623 1.70337 1.01412 1.31614 1.27024 1.24113 0.93346 0.90278 0.97537 1.20022 0.90849 0.94400 0.92408 1.60685 1.09492 1.50304 1.10531 1.18993 0.87233 0.86928 0.95976 0.97236 1.22233 1.00360 1.01544 0.97365 1.21385 1.10484 1.20595 1.03090 0.93070 1.25696 0.97924 0.94855 1.00277 1.70000 1.24745 1.24965 1.36344 0.85488 0.78500 0.77385 0.79789 1.20342 1.20596 1.19597 1.77966 0.98641 1.12606 1.27128 1.47918 1.03187 1.11006 1.57494 0.69578 0.86962 0.86738 0.88290 0.92879 0.90125 0.85126 0.91573 0.94960 0.95324 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.51 71.23 0.75 0.03 16 2 C 0.28 6.64 8.24 138.22 1.14 7.78 16 3 N -0.57 -19.01 11.19 -179.72 -2.01 -21.02 16 4 C 0.23 8.65 7.65 138.63 1.06 9.71 16 5 C 0.15 6.32 6.11 85.56 0.52 6.84 16 6 N -0.68 -31.60 6.22 -499.47 -3.11 -34.70 16 7 C 0.22 11.48 2.57 44.17 0.11 11.59 16 8 H 0.01 0.56 7.80 -2.39 -0.02 0.54 16 9 C -0.16 -7.74 8.94 71.98 0.64 -7.10 16 10 C -0.52 -29.85 8.84 25.60 0.23 -29.62 16 11 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 12 C 0.01 0.61 5.30 84.66 0.45 1.06 16 13 N -0.92 -53.84 11.32 21.45 0.24 -53.59 16 14 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 17 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 18 N -0.33 -11.77 12.80 -51.33 -0.66 -12.43 16 19 N -0.48 -11.30 7.45 -50.71 -0.38 -11.68 16 20 H 0.46 6.53 8.96 -213.09 -1.91 4.62 16 21 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 22 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 23 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.05 2.09 7.44 -2.38 -0.02 2.08 16 25 H 0.08 3.33 8.06 -2.39 -0.02 3.32 16 26 H 0.33 15.07 8.46 -89.69 -0.76 14.31 16 27 H 0.07 3.62 6.07 -2.39 -0.01 3.60 16 28 H 0.03 1.53 8.13 -2.39 -0.02 1.51 16 29 H 0.03 1.26 7.45 -2.38 -0.02 1.24 16 30 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -71.22 260.91 -0.49 -71.71 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -1.51 Total: 14.35 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 4.90 Total: 0.30 kcal Atomic # 7 Polarization: -127.51 SS G_CDS: -5.91 Total: -133.42 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -71.22 -0.49 -71.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388756816.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.362 kcal (2) G-P(sol) polarization free energy of solvation -71.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds