Wall clock time and date at job start Sun Mar 29 2020 21:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30826 * 125.96200 * 2 1 4 4 C 1.33238 * 109.83173 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.52818 * 179.97438 * 4 3 2 6 6 N 1.46894 * 109.47244 * 90.00300 * 5 4 3 7 7 C 1.46899 * 111.00327 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47017 * 34.99659 * 7 6 5 9 9 C 1.53000 * 109.46760 * 274.99850 * 7 6 5 10 10 C 1.50696 * 109.47315 * 155.00022 * 7 6 5 11 11 H 1.08003 * 120.00080 * 0.02562 * 10 7 6 12 12 C 1.37878 * 120.00075 * 179.97438 * 10 7 6 13 13 N 1.31512 * 120.00039 * 0.02562 * 12 10 7 14 14 Si 1.86802 * 120.00055 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.46692 * 60.00133 * 14 12 10 16 16 H 1.48497 * 109.47211 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47210 * 300.00411 * 14 12 10 18 18 N 1.30712 * 108.94325 * 359.75797 * 4 3 2 19 19 N 1.34430 * 125.95959 * 180.02562 * 2 1 3 20 20 H 0.97001 * 126.82220 * 359.92287 * 19 2 1 21 21 H 1.08996 * 109.47096 * 269.95921 * 1 2 3 22 22 H 1.08994 * 109.47164 * 29.96092 * 1 2 3 23 23 H 1.09005 * 109.46768 * 149.95951 * 1 2 3 24 24 H 1.08994 * 109.47091 * 210.00258 * 5 4 3 25 25 H 1.09004 * 109.47132 * 329.99911 * 5 4 3 26 26 H 1.00907 * 110.99642 * 303.95610 * 6 5 4 27 27 H 1.09007 * 109.46992 * 179.97438 * 9 7 6 28 28 H 1.08996 * 109.47200 * 299.99698 * 9 7 6 29 29 H 1.09003 * 109.47421 * 60.00097 * 9 7 6 30 30 H 0.96992 * 119.99858 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7373 1.6236 -0.0013 6 7 5.1220 1.9276 1.3834 7 6 6.2734 2.8390 1.4219 8 1 6.2095 3.5405 0.5901 9 6 7.5676 2.0307 1.3091 10 6 6.2683 3.6002 2.7225 11 1 5.4880 3.4241 3.4482 12 6 7.2604 4.5205 2.9866 13 7 8.2109 4.7346 2.1032 14 14 7.2537 5.4646 4.5985 15 1 7.3398 4.5090 5.7320 16 1 8.4184 6.3849 4.6380 17 1 5.9978 6.2495 4.7072 18 7 3.6194 -0.6168 0.0043 19 7 2.2964 -1.0881 -0.0005 20 1 2.0093 -2.0147 0.0001 21 1 -0.3633 -0.0007 1.0276 22 1 -0.3633 0.8903 -0.5132 23 1 -0.3633 -0.8897 -0.5145 24 1 5.5740 1.1509 -0.5155 25 1 4.4699 2.5470 -0.5152 26 1 4.3430 2.3075 1.9000 27 1 8.4220 2.7071 1.3373 28 1 7.6315 1.3293 2.1409 29 1 7.5714 1.4802 0.3684 30 1 8.9089 5.3818 2.2891 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388756817.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:39 Heat of formation + Delta-G solvation = 79.084168 kcal Electronic energy + Delta-G solvation = -13401.649899 eV Core-core repulsion = 11040.537455 eV Total energy + Delta-G solvation = -2361.112444 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.92709 -36.00349 -33.36550 -32.26552 -31.93499 -29.05284 -27.80889 -25.46765 -24.57010 -21.30043 -20.17482 -19.69992 -17.72026 -16.48387 -15.62659 -14.94181 -14.48446 -13.87617 -13.59186 -13.45195 -13.02492 -12.86459 -12.25650 -11.82586 -11.65011 -11.13571 -10.84041 -10.75567 -10.29292 -10.14050 -10.06355 -9.82583 -9.80097 -9.28070 -8.79028 -8.42913 -7.26748 -5.98211 -4.04304 1.74614 2.76286 3.07654 3.35516 3.39258 3.42698 4.10172 4.45058 4.74039 4.90394 5.21627 5.32735 5.33647 5.59482 5.63907 6.14153 6.15703 6.48191 6.65530 6.92790 7.15539 7.19868 7.26297 7.52690 7.82042 7.93174 8.28716 8.33545 8.40872 8.67924 9.04758 9.61065 11.08256 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.052425 B = 0.006355 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.963568 B = 4405.115711 C = 4736.542293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.271 3.729 3 N -0.537 5.537 4 C 0.248 3.752 5 C 0.149 3.851 6 N -0.681 5.681 7 C 0.213 3.787 8 H 0.005 0.995 9 C -0.125 4.125 10 C -0.517 4.517 11 H 0.059 0.941 12 C 0.062 3.938 13 N -0.890 5.890 14 Si 0.898 3.102 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 N -0.302 5.302 19 N -0.491 5.491 20 H 0.435 0.565 21 H 0.090 0.910 22 H 0.096 0.904 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.051 0.949 26 H 0.335 0.665 27 H 0.081 0.919 28 H 0.032 0.968 29 H 0.005 0.995 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.111 -8.991 -4.750 16.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.007 4.007 3 N -0.267 5.267 4 C -0.035 4.035 5 C 0.017 3.983 6 N -0.313 5.313 7 C 0.106 3.894 8 H 0.023 0.977 9 C -0.184 4.184 10 C -0.556 4.556 11 H 0.077 0.923 12 C -0.139 4.139 13 N -0.529 5.529 14 Si 0.726 3.274 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 N -0.131 5.131 19 N -0.209 5.209 20 H 0.280 0.720 21 H 0.108 0.892 22 H 0.115 0.885 23 H 0.098 0.902 24 H 0.105 0.895 25 H 0.069 0.931 26 H 0.153 0.847 27 H 0.100 0.900 28 H 0.051 0.949 29 H 0.024 0.976 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.942 -9.438 -4.717 15.936 hybrid contribution -0.731 0.613 0.635 1.146 sum -12.672 -8.825 -4.082 15.973 Atomic orbital electron populations 1.20337 0.84026 1.04608 1.04366 1.24357 0.96477 0.83187 0.96709 1.70382 1.01823 1.29456 1.25003 1.24505 0.93037 0.90127 0.95875 1.20205 0.89938 0.93896 0.94240 1.60763 1.10549 1.51389 1.08636 1.19139 0.85913 0.87910 0.96462 0.97742 1.21729 1.01137 0.98940 0.96549 1.21199 1.10845 1.20955 1.02608 0.92255 1.24903 0.95323 0.96762 0.96946 1.69885 1.13596 1.34733 1.34677 0.86563 0.77380 0.79624 0.83833 1.20250 1.21302 1.20307 1.78089 0.95672 1.12850 1.26497 1.48038 1.04786 1.09690 1.58425 0.71998 0.89182 0.88531 0.90222 0.89473 0.93141 0.84726 0.89994 0.94904 0.97552 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.51 36.01 0.38 -0.15 16 2 C 0.27 3.53 8.24 -155.70 -1.28 2.24 16 3 N -0.54 -9.33 11.19 -8.16 -0.09 -9.42 16 4 C 0.25 4.69 7.65 -156.86 -1.20 3.49 16 5 C 0.15 3.02 6.11 -4.98 -0.03 2.99 16 6 N -0.68 -15.72 6.29 -109.23 -0.69 -16.41 16 7 C 0.21 5.58 2.60 -68.87 -0.18 5.40 16 8 H 0.00 0.14 7.80 -51.93 -0.40 -0.27 16 9 C -0.13 -3.22 9.19 37.16 0.34 -2.87 16 10 C -0.52 -14.58 8.59 -34.44 -0.30 -14.88 16 11 H 0.06 1.65 7.62 -52.48 -0.40 1.25 16 12 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 13 N -0.89 -25.75 11.32 55.43 0.63 -25.12 16 14 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 N -0.30 -5.40 12.80 32.42 0.41 -4.98 16 19 N -0.49 -6.34 7.45 32.62 0.24 -6.09 16 20 H 0.44 3.69 8.96 -182.34 -1.63 2.06 16 21 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.09 1.74 7.44 -51.93 -0.39 1.35 16 25 H 0.05 1.01 8.05 -51.93 -0.42 0.59 16 26 H 0.34 7.78 8.22 -39.29 -0.32 7.46 16 27 H 0.08 2.26 6.07 -51.92 -0.32 1.94 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.01 0.13 7.45 -51.93 -0.39 -0.26 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 260.58 15.07 3.93 3.93 Total: -1.00 -32.72 260.58 -8.04 -40.76 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.09 Total: 2.84 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -2.36 Total: -2.12 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: 0.51 Total: -62.02 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.72 -8.04 -40.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388756817.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.846 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds