Wall clock time and date at job start Sun Mar 29 2020 21:41:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 N 1.30826 * 125.96200 * 2 1
4 4 C 1.33238 * 109.83173 * 180.02562 * 3 2 1
5 5 C 1.50703 * 125.52818 * 179.97438 * 4 3 2
6 6 N 1.46894 * 109.47244 * 90.00300 * 5 4 3
7 7 C 1.46899 * 111.00327 * 180.02562 * 6 5 4
8 8 H 1.08996 * 109.47017 * 34.99659 * 7 6 5
9 9 C 1.53000 * 109.46760 * 274.99850 * 7 6 5
10 10 C 1.50696 * 109.47315 * 155.00022 * 7 6 5
11 11 H 1.08003 * 120.00080 * 0.02562 * 10 7 6
12 12 C 1.37878 * 120.00075 * 179.97438 * 10 7 6
13 13 N 1.31512 * 120.00039 * 0.02562 * 12 10 7
14 14 Si 1.86802 * 120.00055 * 179.97438 * 12 10 7
15 15 H 1.48502 * 109.46692 * 60.00133 * 14 12 10
16 16 H 1.48497 * 109.47211 * 179.97438 * 14 12 10
17 17 H 1.48496 * 109.47210 * 300.00411 * 14 12 10
18 18 N 1.30712 * 108.94325 * 359.75797 * 4 3 2
19 19 N 1.34430 * 125.95959 * 180.02562 * 2 1 3
20 20 H 0.97001 * 126.82220 * 359.92287 * 19 2 1
21 21 H 1.08996 * 109.47096 * 269.95921 * 1 2 3
22 22 H 1.08994 * 109.47164 * 29.96092 * 1 2 3
23 23 H 1.09005 * 109.46768 * 149.95951 * 1 2 3
24 24 H 1.08994 * 109.47091 * 210.00258 * 5 4 3
25 25 H 1.09004 * 109.47132 * 329.99911 * 5 4 3
26 26 H 1.00907 * 110.99642 * 303.95610 * 6 5 4
27 27 H 1.09007 * 109.46992 * 179.97438 * 9 7 6
28 28 H 1.08996 * 109.47200 * 299.99698 * 9 7 6
29 29 H 1.09003 * 109.47421 * 60.00097 * 9 7 6
30 30 H 0.96992 * 119.99858 * 180.02562 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2753 1.0589 0.0000
4 6 3.5552 0.6887 -0.0006
5 6 4.7373 1.6236 -0.0013
6 7 5.1220 1.9276 1.3834
7 6 6.2734 2.8390 1.4219
8 1 6.2095 3.5405 0.5901
9 6 7.5676 2.0307 1.3091
10 6 6.2683 3.6002 2.7225
11 1 5.4880 3.4241 3.4482
12 6 7.2604 4.5205 2.9866
13 7 8.2109 4.7346 2.1032
14 14 7.2537 5.4646 4.5985
15 1 7.3398 4.5090 5.7320
16 1 8.4184 6.3849 4.6380
17 1 5.9978 6.2495 4.7072
18 7 3.6194 -0.6168 0.0043
19 7 2.2964 -1.0881 -0.0005
20 1 2.0093 -2.0147 0.0001
21 1 -0.3633 -0.0007 1.0276
22 1 -0.3633 0.8903 -0.5132
23 1 -0.3633 -0.8897 -0.5145
24 1 5.5740 1.1509 -0.5155
25 1 4.4699 2.5470 -0.5152
26 1 4.3430 2.3075 1.9000
27 1 8.4220 2.7071 1.3373
28 1 7.6315 1.3293 2.1409
29 1 7.5714 1.4802 0.3684
30 1 8.9089 5.3818 2.2891
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000388756817.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:41:39
Heat of formation + Delta-G solvation = 79.084168 kcal
Electronic energy + Delta-G solvation = -13401.649899 eV
Core-core repulsion = 11040.537455 eV
Total energy + Delta-G solvation = -2361.112444 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 210.118 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-41.92709 -36.00349 -33.36550 -32.26552 -31.93499 -29.05284 -27.80889 -25.46765
-24.57010 -21.30043 -20.17482 -19.69992 -17.72026 -16.48387 -15.62659 -14.94181
-14.48446 -13.87617 -13.59186 -13.45195 -13.02492 -12.86459 -12.25650 -11.82586
-11.65011 -11.13571 -10.84041 -10.75567 -10.29292 -10.14050 -10.06355 -9.82583
-9.80097 -9.28070 -8.79028 -8.42913 -7.26748 -5.98211 -4.04304 1.74614
2.76286 3.07654 3.35516 3.39258 3.42698 4.10172 4.45058 4.74039
4.90394 5.21627 5.32735 5.33647 5.59482 5.63907 6.14153 6.15703
6.48191 6.65530 6.92790 7.15539 7.19868 7.26297 7.52690 7.82042
7.93174 8.28716 8.33545 8.40872 8.67924 9.04758 9.61065 11.08256
Molecular weight = 210.12amu
Principal moments of inertia in cm(-1)
A = 0.052425 B = 0.006355 C = 0.005910
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 533.963568 B = 4405.115711 C = 4736.542293
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C 0.271 3.729
3 N -0.537 5.537
4 C 0.248 3.752
5 C 0.149 3.851
6 N -0.681 5.681
7 C 0.213 3.787
8 H 0.005 0.995
9 C -0.125 4.125
10 C -0.517 4.517
11 H 0.059 0.941
12 C 0.062 3.938
13 N -0.890 5.890
14 Si 0.898 3.102
15 H -0.277 1.277
16 H -0.287 1.287
17 H -0.277 1.277
18 N -0.302 5.302
19 N -0.491 5.491
20 H 0.435 0.565
21 H 0.090 0.910
22 H 0.096 0.904
23 H 0.079 0.921
24 H 0.087 0.913
25 H 0.051 0.949
26 H 0.335 0.665
27 H 0.081 0.919
28 H 0.032 0.968
29 H 0.005 0.995
30 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.111 -8.991 -4.750 16.592
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.007 4.007
3 N -0.267 5.267
4 C -0.035 4.035
5 C 0.017 3.983
6 N -0.313 5.313
7 C 0.106 3.894
8 H 0.023 0.977
9 C -0.184 4.184
10 C -0.556 4.556
11 H 0.077 0.923
12 C -0.139 4.139
13 N -0.529 5.529
14 Si 0.726 3.274
15 H -0.203 1.203
16 H -0.213 1.213
17 H -0.203 1.203
18 N -0.131 5.131
19 N -0.209 5.209
20 H 0.280 0.720
21 H 0.108 0.892
22 H 0.115 0.885
23 H 0.098 0.902
24 H 0.105 0.895
25 H 0.069 0.931
26 H 0.153 0.847
27 H 0.100 0.900
28 H 0.051 0.949
29 H 0.024 0.976
30 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -11.942 -9.438 -4.717 15.936
hybrid contribution -0.731 0.613 0.635 1.146
sum -12.672 -8.825 -4.082 15.973
Atomic orbital electron populations
1.20337 0.84026 1.04608 1.04366 1.24357 0.96477 0.83187 0.96709
1.70382 1.01823 1.29456 1.25003 1.24505 0.93037 0.90127 0.95875
1.20205 0.89938 0.93896 0.94240 1.60763 1.10549 1.51389 1.08636
1.19139 0.85913 0.87910 0.96462 0.97742 1.21729 1.01137 0.98940
0.96549 1.21199 1.10845 1.20955 1.02608 0.92255 1.24903 0.95323
0.96762 0.96946 1.69885 1.13596 1.34733 1.34677 0.86563 0.77380
0.79624 0.83833 1.20250 1.21302 1.20307 1.78089 0.95672 1.12850
1.26497 1.48038 1.04786 1.09690 1.58425 0.71998 0.89182 0.88531
0.90222 0.89473 0.93141 0.84726 0.89994 0.94904 0.97552 0.92869
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.53 10.51 36.01 0.38 -0.15 16
2 C 0.27 3.53 8.24 -155.70 -1.28 2.24 16
3 N -0.54 -9.33 11.19 -8.16 -0.09 -9.42 16
4 C 0.25 4.69 7.65 -156.86 -1.20 3.49 16
5 C 0.15 3.02 6.11 -4.98 -0.03 2.99 16
6 N -0.68 -15.72 6.29 -109.23 -0.69 -16.41 16
7 C 0.21 5.58 2.60 -68.87 -0.18 5.40 16
8 H 0.00 0.14 7.80 -51.93 -0.40 -0.27 16
9 C -0.13 -3.22 9.19 37.16 0.34 -2.87 16
10 C -0.52 -14.58 8.59 -34.44 -0.30 -14.88 16
11 H 0.06 1.65 7.62 -52.48 -0.40 1.25 16
12 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16
13 N -0.89 -25.75 11.32 55.43 0.63 -25.12 16
14 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16
15 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16
16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
18 N -0.30 -5.40 12.80 32.42 0.41 -4.98 16
19 N -0.49 -6.34 7.45 32.62 0.24 -6.09 16
20 H 0.44 3.69 8.96 -182.34 -1.63 2.06 16
21 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16
22 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16
23 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16
24 H 0.09 1.74 7.44 -51.93 -0.39 1.35 16
25 H 0.05 1.01 8.05 -51.93 -0.42 0.59 16
26 H 0.34 7.78 8.22 -39.29 -0.32 7.46 16
27 H 0.08 2.26 6.07 -51.92 -0.32 1.94 16
28 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16
29 H 0.01 0.13 7.45 -51.93 -0.39 -0.26 16
30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16
LS Contribution 260.58 15.07 3.93 3.93
Total: -1.00 -32.72 260.58 -8.04 -40.76
By element:
Atomic # 1 Polarization: 7.94 SS G_CDS: -5.09 Total: 2.84 kcal
Atomic # 6 Polarization: 0.24 SS G_CDS: -2.36 Total: -2.12 kcal
Atomic # 7 Polarization: -62.53 SS G_CDS: 0.51 Total: -62.02 kcal
Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal
Total LS contribution 3.93 Total: 3.93 kcal
Total: -32.72 -8.04 -40.76 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000388756817.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.846 kcal
(2) G-P(sol) polarization free energy of solvation -32.717 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.129 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal
(6) G-S(sol) free energy of system = (1) + (5) 79.084 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds