Wall clock time and date at job start Sun Mar 29 2020 21:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30826 * 125.96200 * 2 1 4 4 C 1.33238 * 109.83173 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.52818 * 179.97438 * 4 3 2 6 6 N 1.46894 * 109.47244 * 90.00300 * 5 4 3 7 7 C 1.46899 * 111.00327 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47017 * 34.99659 * 7 6 5 9 9 C 1.53000 * 109.46760 * 274.99850 * 7 6 5 10 10 C 1.50696 * 109.47315 * 155.00022 * 7 6 5 11 11 H 1.08003 * 120.00080 * 0.02562 * 10 7 6 12 12 C 1.37878 * 120.00075 * 179.97438 * 10 7 6 13 13 N 1.31512 * 120.00039 * 0.02562 * 12 10 7 14 14 Si 1.86802 * 120.00055 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.46692 * 60.00133 * 14 12 10 16 16 H 1.48497 * 109.47211 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47210 * 300.00411 * 14 12 10 18 18 N 1.30712 * 108.94325 * 359.75797 * 4 3 2 19 19 N 1.34430 * 125.95959 * 180.02562 * 2 1 3 20 20 H 0.97001 * 126.82220 * 359.92287 * 19 2 1 21 21 H 1.08996 * 109.47096 * 269.95921 * 1 2 3 22 22 H 1.08994 * 109.47164 * 29.96092 * 1 2 3 23 23 H 1.09005 * 109.46768 * 149.95951 * 1 2 3 24 24 H 1.08994 * 109.47091 * 210.00258 * 5 4 3 25 25 H 1.09004 * 109.47132 * 329.99911 * 5 4 3 26 26 H 1.00907 * 110.99642 * 303.95610 * 6 5 4 27 27 H 1.09007 * 109.46992 * 179.97438 * 9 7 6 28 28 H 1.08996 * 109.47200 * 299.99698 * 9 7 6 29 29 H 1.09003 * 109.47421 * 60.00097 * 9 7 6 30 30 H 0.96992 * 119.99858 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7373 1.6236 -0.0013 6 7 5.1220 1.9276 1.3834 7 6 6.2734 2.8390 1.4219 8 1 6.2095 3.5405 0.5901 9 6 7.5676 2.0307 1.3091 10 6 6.2683 3.6002 2.7225 11 1 5.4880 3.4241 3.4482 12 6 7.2604 4.5205 2.9866 13 7 8.2109 4.7346 2.1032 14 14 7.2537 5.4646 4.5985 15 1 7.3398 4.5090 5.7320 16 1 8.4184 6.3849 4.6380 17 1 5.9978 6.2495 4.7072 18 7 3.6194 -0.6168 0.0043 19 7 2.2964 -1.0881 -0.0005 20 1 2.0093 -2.0147 0.0001 21 1 -0.3633 -0.0007 1.0276 22 1 -0.3633 0.8903 -0.5132 23 1 -0.3633 -0.8897 -0.5145 24 1 5.5740 1.1509 -0.5155 25 1 4.4699 2.5470 -0.5152 26 1 4.3430 2.3075 1.9000 27 1 8.4220 2.7071 1.3373 28 1 7.6315 1.3293 2.1409 29 1 7.5714 1.4802 0.3684 30 1 8.9089 5.3818 2.2891 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388756817.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:39 Heat of formation + Delta-G solvation = 54.838482 kcal Electronic energy + Delta-G solvation = -13402.701271 eV Core-core repulsion = 11040.537455 eV Total energy + Delta-G solvation = -2362.163816 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.12270 -37.88097 -35.02608 -33.60261 -33.33718 -30.79520 -28.90493 -27.46467 -26.39890 -22.45492 -21.84043 -21.38618 -18.89991 -18.49029 -17.02536 -16.70503 -16.10693 -15.41419 -15.15299 -14.99676 -14.23664 -13.73630 -13.65017 -13.53833 -13.08090 -12.81941 -12.70975 -12.63212 -12.30151 -12.18701 -11.98542 -11.13498 -11.09033 -10.91449 -10.57074 -10.47663 -9.16597 -8.12334 -6.26637 0.59503 1.44045 1.46404 1.54032 1.74755 1.80410 2.43563 3.02813 3.16221 3.59319 3.74958 3.99433 4.46929 4.53633 4.73319 4.77076 4.84077 5.06848 5.09112 5.18596 5.29210 5.32719 5.45286 5.65558 5.83431 6.20288 6.26713 6.39386 6.67342 6.92796 7.11936 7.42987 8.93506 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.052425 B = 0.006355 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.963568 B = 4405.115711 C = 4736.542293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.285 3.715 3 N -0.575 5.575 4 C 0.231 3.769 5 C 0.155 3.845 6 N -0.678 5.678 7 C 0.217 3.783 8 H -0.021 1.021 9 C -0.113 4.113 10 C -0.541 4.541 11 H 0.057 0.943 12 C 0.015 3.985 13 N -0.916 5.916 14 Si 0.965 3.035 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.271 1.271 18 N -0.330 5.330 19 N -0.475 5.475 20 H 0.456 0.544 21 H 0.107 0.893 22 H 0.100 0.900 23 H 0.117 0.883 24 H 0.085 0.915 25 H 0.047 0.953 26 H 0.333 0.667 27 H 0.061 0.939 28 H 0.026 0.974 29 H 0.024 0.976 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.904 -9.779 -4.252 18.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.007 3.993 3 N -0.306 5.306 4 C -0.053 4.053 5 C 0.023 3.977 6 N -0.310 5.310 7 C 0.109 3.891 8 H -0.004 1.004 9 C -0.172 4.172 10 C -0.579 4.579 11 H 0.075 0.925 12 C -0.184 4.184 13 N -0.555 5.555 14 Si 0.790 3.210 15 H -0.198 1.198 16 H -0.206 1.206 17 H -0.196 1.196 18 N -0.161 5.161 19 N -0.195 5.195 20 H 0.305 0.695 21 H 0.126 0.874 22 H 0.119 0.881 23 H 0.136 0.864 24 H 0.104 0.896 25 H 0.065 0.935 26 H 0.150 0.850 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.766 -10.272 -4.230 17.689 hybrid contribution -0.275 0.770 0.421 0.920 sum -14.041 -9.501 -3.809 17.376 Atomic orbital electron populations 1.20655 0.79597 1.06688 1.06061 1.25353 0.98394 0.81897 0.93633 1.70339 1.01555 1.31730 1.26989 1.24082 0.93288 0.90290 0.97614 1.20041 0.90961 0.94323 0.92379 1.60666 1.09770 1.50004 1.10580 1.18965 0.87324 0.87901 0.94921 1.00379 1.21556 1.00129 0.98297 0.97203 1.21493 1.11179 1.21877 1.03347 0.92519 1.25719 0.94812 0.97528 1.00349 1.70005 1.14001 1.35118 1.36351 0.85507 0.77676 0.78268 0.79521 1.19794 1.20633 1.19574 1.77941 0.98621 1.12427 1.27071 1.47909 1.03181 1.10982 1.57459 0.69529 0.87426 0.88144 0.86437 0.89649 0.93454 0.85004 0.91996 0.95506 0.95747 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.51 71.24 0.75 0.00 16 2 C 0.28 6.74 8.24 138.23 1.14 7.88 16 3 N -0.58 -19.51 11.19 -179.72 -2.01 -21.52 16 4 C 0.23 8.70 7.65 138.63 1.06 9.77 16 5 C 0.15 6.39 6.11 85.56 0.52 6.91 16 6 N -0.68 -31.88 6.29 -499.49 -3.14 -35.02 16 7 C 0.22 11.63 2.60 44.17 0.11 11.74 16 8 H -0.02 -1.23 7.80 -2.39 -0.02 -1.25 16 9 C -0.11 -5.92 9.19 71.98 0.66 -5.26 16 10 C -0.54 -30.82 8.59 25.60 0.22 -30.60 16 11 H 0.06 3.19 7.62 -2.91 -0.02 3.16 16 12 C 0.02 0.87 5.30 84.66 0.45 1.32 16 13 N -0.92 -53.50 11.32 21.45 0.24 -53.25 16 14 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 15 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 N -0.33 -11.54 12.80 -51.33 -0.66 -12.20 16 19 N -0.47 -11.21 7.45 -50.70 -0.38 -11.58 16 20 H 0.46 6.40 8.96 -213.10 -1.91 4.49 16 21 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 24 H 0.09 3.48 7.44 -2.39 -0.02 3.46 16 25 H 0.05 1.96 8.05 -2.39 -0.02 1.94 16 26 H 0.33 15.75 8.22 -89.69 -0.74 15.02 16 27 H 0.06 3.47 6.07 -2.38 -0.01 3.46 16 28 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.02 1.13 7.45 -2.39 -0.02 1.11 16 30 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -70.89 260.58 -0.49 -71.37 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -1.48 Total: 14.14 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 4.92 Total: 1.75 kcal Atomic # 7 Polarization: -127.63 SS G_CDS: -5.94 Total: -133.57 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -70.89 -0.49 -71.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388756817.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.211 kcal (2) G-P(sol) polarization free energy of solvation -70.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds