Wall clock time and date at job start Sun Mar 29 2020 21:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40448 * 126.82050 * 2 1 4 4 C 1.30715 * 106.79261 * 179.97438 * 3 2 1 5 5 N 1.33244 * 108.94545 * 0.02562 * 4 3 2 6 6 C 1.30832 * 109.83031 * 359.97438 * 5 4 3 7 7 C 1.50699 * 125.96108 * 179.97438 * 6 5 4 8 8 N 1.46895 * 109.47061 * 90.02481 * 7 6 5 9 9 C 1.46904 * 110.99953 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47026 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47013 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00126 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00206 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00137 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99726 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47174 * 90.00534 * 15 13 11 17 17 H 1.48505 * 109.47001 * 210.00143 * 15 13 11 18 18 H 1.48495 * 109.47331 * 330.00450 * 15 13 11 19 19 H 1.09002 * 109.46976 * 269.99565 * 1 2 3 20 20 H 1.08997 * 109.47563 * 30.00045 * 1 2 3 21 21 H 1.09004 * 109.46586 * 149.99797 * 1 2 3 22 22 H 1.08005 * 125.52506 * 180.26044 * 4 3 2 23 23 H 1.09000 * 109.46726 * 210.02437 * 7 6 5 24 24 H 1.09002 * 109.46654 * 330.02426 * 7 6 5 25 25 H 1.00898 * 111.00465 * 56.04299 * 8 7 6 26 26 H 1.09004 * 109.46880 * 299.99693 * 9 8 7 27 27 H 1.09001 * 109.47206 * 59.99867 * 9 8 7 28 28 H 1.08995 * 109.47305 * 299.99760 * 10 9 8 29 29 H 1.09001 * 109.47182 * 59.99919 * 10 9 8 30 30 H 0.97007 * 120.00286 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 0.0006 5 7 3.5096 -0.6556 0.0003 6 6 2.2707 -1.0761 0.0002 7 6 1.8248 -2.5156 -0.0006 8 7 1.6794 -2.9839 1.3841 9 6 1.2454 -4.3868 1.4225 10 6 1.1060 -4.8379 2.8778 11 6 0.6602 -6.2769 2.9172 12 1 0.4926 -6.8157 1.9964 13 6 0.4653 -6.9053 4.1288 14 7 0.0767 -8.1612 4.1632 15 14 0.7545 -5.9731 5.7216 16 1 -0.5061 -5.3114 6.1438 17 1 1.1935 -6.9210 6.7771 18 1 1.8059 -4.9461 5.5102 19 1 -0.3633 -0.0001 1.0277 20 1 -0.3634 0.8899 -0.5138 21 1 -0.3632 -0.8900 -0.5139 22 1 4.4255 1.2876 0.0047 23 1 0.8673 -2.5989 -0.5148 24 1 2.5676 -3.1257 -0.5145 25 1 1.0441 -2.3942 1.9005 26 1 0.2840 -4.4836 0.9181 27 1 1.9845 -5.0097 0.9186 28 1 2.0676 -4.7411 3.3819 29 1 0.3672 -4.2150 3.3821 30 1 -0.0601 -8.6035 5.0157 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389320085.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:43 Heat of formation + Delta-G solvation = 63.388094 kcal Electronic energy + Delta-G solvation = -13254.084302 eV Core-core repulsion = 10892.291225 eV Total energy + Delta-G solvation = -2361.793077 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.09810 -37.77573 -35.25261 -34.83485 -33.12125 -31.35798 -28.50559 -27.32447 -24.98992 -23.00350 -22.36230 -21.34507 -18.95200 -17.96390 -17.18262 -16.91368 -16.31175 -15.81916 -15.32505 -15.11471 -14.69111 -14.33782 -14.08296 -14.01337 -13.70680 -13.18816 -12.88540 -12.55135 -11.93225 -11.80353 -11.76312 -11.40815 -11.04738 -10.76835 -10.75072 -10.59181 -9.42979 -8.28296 -6.32247 0.51916 1.36614 1.36621 1.40632 1.52594 1.90109 2.37668 3.01145 3.07896 3.40018 3.57220 3.87132 4.13763 4.30752 4.42169 4.51202 4.54927 4.64920 4.65794 4.97229 5.26755 5.29401 5.45443 5.48634 5.65172 5.76107 6.00315 6.24056 6.38497 6.76462 7.09680 7.32926 8.88119 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.052851 B = 0.005742 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.667455 B = 4875.291009 C = 4944.791606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.378 5.378 3 N -0.346 5.346 4 C 0.192 3.808 5 N -0.563 5.563 6 C 0.280 3.720 7 C 0.141 3.859 8 N -0.691 5.691 9 C 0.090 3.910 10 C -0.007 4.007 11 C -0.530 4.530 12 H 0.038 0.962 13 C 0.008 3.992 14 N -0.950 5.950 15 Si 0.948 3.052 16 H -0.265 1.265 17 H -0.286 1.286 18 H -0.252 1.252 19 H 0.091 0.909 20 H 0.105 0.895 21 H 0.113 0.887 22 H 0.246 0.754 23 H 0.082 0.918 24 H 0.106 0.894 25 H 0.342 0.658 26 H 0.037 0.963 27 H 0.064 0.936 28 H 0.018 0.982 29 H 0.020 0.980 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.441 17.583 -8.307 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.169 5.169 3 N -0.175 5.175 4 C -0.111 4.111 5 N -0.292 5.292 6 C 0.003 3.997 7 C 0.010 3.990 8 N -0.324 5.324 9 C -0.038 4.038 10 C -0.045 4.045 11 C -0.569 4.569 12 H 0.057 0.943 13 C -0.189 4.189 14 N -0.591 5.591 15 Si 0.772 3.228 16 H -0.190 1.190 17 H -0.212 1.212 18 H -0.175 1.175 19 H 0.110 0.890 20 H 0.124 0.876 21 H 0.131 0.869 22 H 0.262 0.738 23 H 0.099 0.901 24 H 0.124 0.876 25 H 0.160 0.840 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.049 17.858 -8.149 19.658 hybrid contribution -0.967 -0.158 0.548 1.123 sum 0.082 17.700 -7.601 19.263 Atomic orbital electron populations 1.22369 0.71621 1.06611 1.05324 1.50546 1.09226 1.03395 1.53762 1.77949 1.02720 1.09160 1.27659 1.26608 0.96623 0.90312 0.97526 1.70483 1.20889 1.12354 1.25453 1.24406 0.86317 0.92853 0.96139 1.20423 1.02128 0.84940 0.91532 1.60358 1.55868 1.04090 1.12080 1.21672 0.98105 0.86512 0.97521 1.19450 0.96439 0.94040 0.94550 1.21397 1.45121 0.97086 0.93272 0.94331 1.25927 0.94274 0.95563 1.03160 1.70054 1.48847 1.12945 1.27229 0.85683 0.79725 0.78878 0.78487 1.18981 1.21223 1.17539 0.89037 0.87613 0.86875 0.73801 0.90054 0.87587 0.83972 0.94527 0.91759 0.96367 0.96186 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 11.33 127.77 1.45 2.54 16 2 N -0.38 -8.69 4.04 -359.87 -1.45 -10.15 16 3 N -0.35 -8.96 12.70 -61.24 -0.78 -9.74 16 4 C 0.19 4.76 13.03 180.76 2.36 7.11 16 5 N -0.56 -16.59 11.19 -191.77 -2.15 -18.73 16 6 C 0.28 7.31 7.50 138.23 1.04 8.35 16 7 C 0.14 3.36 6.01 85.56 0.51 3.87 16 8 N -0.69 -20.59 6.49 -517.93 -3.36 -23.95 16 9 C 0.09 3.23 5.62 86.30 0.49 3.72 16 10 C -0.01 -0.31 4.30 29.85 0.13 -0.18 16 11 C -0.53 -29.74 9.66 25.60 0.25 -29.49 16 12 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 13 C 0.01 0.45 5.47 84.65 0.46 0.91 16 14 N -0.95 -58.88 13.96 21.45 0.30 -58.58 16 15 Si 0.95 44.08 27.47 68.60 1.88 45.96 16 16 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 18 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 19 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 20 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.11 1.04 7.11 -2.39 -0.02 1.02 16 22 H 0.25 3.97 8.06 -2.91 -0.02 3.95 16 23 H 0.08 1.44 7.13 -2.39 -0.02 1.43 16 24 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 25 H 0.34 9.37 8.72 -89.70 -0.78 8.59 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 28 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 29 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 30 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -71.68 262.30 1.42 -70.25 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.30 Total: 8.09 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 6.68 Total: -3.17 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -7.44 Total: -121.15 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.96 kcal Total: -71.68 1.42 -70.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389320085.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.643 kcal (2) G-P(sol) polarization free energy of solvation -71.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds