Wall clock time and date at job start Sun Mar 29 2020 21:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46509 * 109.47097 * 2 1 4 4 C 1.36930 * 119.99757 * 266.15353 * 3 2 1 5 5 H 1.07999 * 120.00125 * 146.04445 * 4 3 2 6 6 C 1.38812 * 120.00309 * 326.04087 * 4 3 2 7 7 N 1.31615 * 120.00173 * 337.75652 * 6 4 3 8 8 Si 1.86803 * 120.00046 * 157.75036 * 6 4 3 9 9 H 1.48499 * 109.46709 * 90.00281 * 8 6 4 10 10 H 1.48497 * 109.47112 * 210.00134 * 8 6 4 11 11 H 1.48497 * 109.47342 * 330.00401 * 8 6 4 12 12 C 1.46497 * 119.99755 * 86.15156 * 3 2 1 13 13 C 1.50701 * 109.47141 * 90.00194 * 12 3 2 14 14 C 1.35348 * 126.91198 * 95.01747 * 13 12 3 15 15 N 1.33778 * 106.49560 * 179.97438 * 14 13 12 16 16 N 1.28636 * 108.88710 * 359.97438 * 15 14 13 17 17 N 1.28713 * 110.17542 * 359.76460 * 16 15 14 18 18 C 1.46501 * 125.86837 * 180.23863 * 17 16 15 19 19 H 1.09001 * 109.46644 * 299.99813 * 1 2 3 20 20 H 1.08994 * 109.46831 * 59.99708 * 1 2 3 21 21 H 1.09000 * 109.46930 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.46999 * 240.00316 * 2 1 3 23 23 H 1.08998 * 109.46989 * 119.99800 * 2 1 3 24 24 H 0.96998 * 120.00278 * 179.97438 * 7 6 4 25 25 H 1.09001 * 109.47210 * 209.99849 * 12 3 2 26 26 H 1.09002 * 109.47303 * 330.00191 * 12 3 2 27 27 H 1.07997 * 126.75786 * 359.97438 * 14 13 12 28 28 H 1.09005 * 109.46989 * 270.16854 * 18 17 16 29 29 H 1.08997 * 109.47123 * 30.16932 * 18 17 16 30 30 H 1.09003 * 109.47263 * 150.16858 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3216 2.0002 -1.1832 5 1 2.1492 3.0602 -1.2979 6 6 2.8507 1.2654 -2.2353 7 7 3.4625 0.1243 -1.9990 8 14 2.6941 1.8959 -3.9868 9 1 3.8687 2.7433 -4.3145 10 1 2.6369 0.7453 -4.9238 11 1 1.4524 2.7003 -4.1142 12 6 2.1823 2.1002 1.2659 13 6 3.5750 1.8743 1.7953 14 6 4.6518 2.6748 1.6181 15 7 5.6700 2.0893 2.2585 16 7 5.2512 0.9988 2.7971 17 7 3.9991 0.8334 2.5488 18 6 3.1755 -0.2906 3.0010 19 1 -0.3632 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.8319 -0.3894 -2.7342 25 1 2.0246 3.1662 1.1014 26 1 1.4545 1.7327 1.9893 27 1 4.6831 3.6036 1.0679 28 1 3.2117 -1.0889 2.2597 29 1 3.5570 -0.6609 3.9526 30 1 2.1450 0.0416 3.1273 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393715690.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:15 Heat of formation + Delta-G solvation = 117.151036 kcal Electronic energy + Delta-G solvation = -14353.289616 eV Core-core repulsion = 11993.827875 eV Total energy + Delta-G solvation = -2359.461740 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.36814 -36.21235 -33.87926 -31.97666 -31.03224 -28.94742 -27.35014 -25.77731 -23.53501 -21.80338 -20.96601 -19.60463 -16.90161 -16.39786 -15.95825 -14.89518 -14.12434 -13.98330 -13.62644 -13.46179 -12.87034 -12.56445 -12.30067 -11.92500 -11.45942 -11.42430 -10.91415 -10.76978 -10.70856 -10.29607 -10.13244 -9.97049 -9.75922 -9.29024 -8.61174 -8.28823 -6.81716 -5.92333 -3.46164 2.41669 3.11629 3.30898 3.38763 3.39604 3.44329 4.40140 4.96702 5.18971 5.32572 5.34420 5.45399 5.60516 5.69682 5.88347 6.12485 6.30523 6.37961 6.40696 6.53191 6.66313 6.68933 7.02140 7.10331 7.37371 7.58890 7.69711 8.35076 9.02711 9.30942 9.64607 10.18973 11.09071 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.031492 B = 0.012172 C = 0.010165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.895911 B = 2299.748421 C = 2753.782098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.132 3.868 3 N -0.569 5.569 4 C -0.263 4.263 5 H 0.068 0.932 6 C 0.014 3.986 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.284 1.284 10 H -0.289 1.289 11 H -0.276 1.276 12 C 0.205 3.795 13 C 0.003 3.997 14 C -0.057 4.057 15 N -0.281 5.281 16 N -0.119 5.119 17 N -0.293 5.293 18 C 0.089 3.911 19 H 0.033 0.967 20 H 0.052 0.948 21 H 0.036 0.964 22 H 0.100 0.900 23 H 0.019 0.981 24 H 0.256 0.744 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.178 0.822 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.409 -0.135 6.560 8.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.289 5.289 4 C -0.393 4.393 5 H 0.086 0.914 6 C -0.187 4.187 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.211 1.211 10 H -0.215 1.215 11 H -0.202 1.202 12 C 0.075 3.925 13 C -0.133 4.133 14 C -0.215 4.215 15 N -0.147 5.147 16 N -0.099 5.099 17 N -0.087 5.087 18 C -0.053 4.053 19 H 0.052 0.948 20 H 0.071 0.929 21 H 0.055 0.945 22 H 0.118 0.882 23 H 0.038 0.962 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.067 0.933 27 H 0.195 0.805 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.101 -0.875 7.143 8.283 hybrid contribution -0.872 0.425 -1.570 1.846 sum -4.973 -0.450 5.573 7.483 Atomic orbital electron populations 1.22296 1.00367 0.98915 1.00685 1.21102 0.90130 0.86132 1.01979 1.44141 1.72551 1.12047 1.00144 1.19103 1.37068 0.94375 0.88734 0.91449 1.25162 0.96366 0.97737 0.99478 1.69981 1.35603 1.15845 1.31033 0.86339 0.78267 0.78056 0.84394 1.21100 1.21486 1.20156 1.19729 0.85702 0.98394 0.88632 1.23979 1.03050 0.89189 0.97077 1.23101 0.89159 1.03467 1.05737 1.74862 1.26490 1.02178 1.11187 1.78059 0.93538 1.15225 1.23035 1.46923 1.08315 1.18163 1.35293 1.22096 0.94389 0.87342 1.01478 0.94791 0.92918 0.94519 0.88233 0.96240 0.93388 0.90561 0.93281 0.80480 0.89369 0.89200 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 10.24 37.16 0.38 -2.57 16 2 C 0.13 2.83 5.98 -4.03 -0.02 2.81 16 3 N -0.57 -12.93 2.44 -174.61 -0.43 -13.36 16 4 C -0.26 -6.72 9.49 -15.06 -0.14 -6.87 16 5 H 0.07 1.69 7.92 -52.49 -0.42 1.28 16 6 C 0.01 0.36 4.93 -17.43 -0.09 0.27 16 7 N -0.88 -24.78 11.32 55.49 0.63 -24.16 16 8 Si 0.90 20.93 29.61 -169.99 -5.03 15.90 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.20 3.91 5.91 -5.19 -0.03 3.88 16 13 C 0.00 0.05 6.58 -82.09 -0.54 -0.49 16 14 C -0.06 -1.21 11.99 -17.73 -0.21 -1.42 16 15 N -0.28 -6.40 12.41 30.23 0.38 -6.02 16 16 N -0.12 -2.61 13.17 60.35 0.79 -1.81 16 17 N -0.29 -5.71 3.74 -63.78 -0.24 -5.95 16 18 C 0.09 1.27 9.98 59.85 0.60 1.86 16 19 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 20 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.10 2.51 5.32 -51.93 -0.28 2.24 16 23 H 0.02 0.38 5.61 -51.93 -0.29 0.09 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 26 H 0.05 0.80 7.24 -51.93 -0.38 0.43 16 27 H 0.18 3.40 8.06 -52.49 -0.42 2.98 16 28 H 0.09 1.30 7.15 -51.93 -0.37 0.93 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.09 1.10 7.19 -51.93 -0.37 0.72 16 LS Contribution 256.50 15.07 3.87 3.87 Total: -1.00 -30.95 256.50 -3.86 -34.81 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -3.77 Total: -0.75 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -0.06 Total: -2.52 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 1.13 Total: -51.30 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.95 -3.86 -34.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393715690.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.963 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds