Wall clock time and date at job start Sun Mar 29 2020 21:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46509 * 109.47097 * 2 1 4 4 C 1.36930 * 119.99757 * 266.15353 * 3 2 1 5 5 H 1.07999 * 120.00125 * 146.04445 * 4 3 2 6 6 C 1.38812 * 120.00309 * 326.04087 * 4 3 2 7 7 N 1.31615 * 120.00173 * 337.75652 * 6 4 3 8 8 Si 1.86803 * 120.00046 * 157.75036 * 6 4 3 9 9 H 1.48499 * 109.46709 * 90.00281 * 8 6 4 10 10 H 1.48497 * 109.47112 * 210.00134 * 8 6 4 11 11 H 1.48497 * 109.47342 * 330.00401 * 8 6 4 12 12 C 1.46497 * 119.99755 * 86.15156 * 3 2 1 13 13 C 1.50701 * 109.47141 * 90.00194 * 12 3 2 14 14 C 1.35348 * 126.91198 * 95.01747 * 13 12 3 15 15 N 1.33778 * 106.49560 * 179.97438 * 14 13 12 16 16 N 1.28636 * 108.88710 * 359.97438 * 15 14 13 17 17 N 1.28713 * 110.17542 * 359.76460 * 16 15 14 18 18 C 1.46501 * 125.86837 * 180.23863 * 17 16 15 19 19 H 1.09001 * 109.46644 * 299.99813 * 1 2 3 20 20 H 1.08994 * 109.46831 * 59.99708 * 1 2 3 21 21 H 1.09000 * 109.46930 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.46999 * 240.00316 * 2 1 3 23 23 H 1.08998 * 109.46989 * 119.99800 * 2 1 3 24 24 H 0.96998 * 120.00278 * 179.97438 * 7 6 4 25 25 H 1.09001 * 109.47210 * 209.99849 * 12 3 2 26 26 H 1.09002 * 109.47303 * 330.00191 * 12 3 2 27 27 H 1.07997 * 126.75786 * 359.97438 * 14 13 12 28 28 H 1.09005 * 109.46989 * 270.16854 * 18 17 16 29 29 H 1.08997 * 109.47123 * 30.16932 * 18 17 16 30 30 H 1.09003 * 109.47263 * 150.16858 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3216 2.0002 -1.1832 5 1 2.1492 3.0602 -1.2979 6 6 2.8507 1.2654 -2.2353 7 7 3.4625 0.1243 -1.9990 8 14 2.6941 1.8959 -3.9868 9 1 3.8687 2.7433 -4.3145 10 1 2.6369 0.7453 -4.9238 11 1 1.4524 2.7003 -4.1142 12 6 2.1823 2.1002 1.2659 13 6 3.5750 1.8743 1.7953 14 6 4.6518 2.6748 1.6181 15 7 5.6700 2.0893 2.2585 16 7 5.2512 0.9988 2.7971 17 7 3.9991 0.8334 2.5488 18 6 3.1755 -0.2906 3.0010 19 1 -0.3632 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.8319 -0.3894 -2.7342 25 1 2.0246 3.1662 1.1014 26 1 1.4545 1.7327 1.9893 27 1 4.6831 3.6036 1.0679 28 1 3.2117 -1.0889 2.2597 29 1 3.5570 -0.6609 3.9526 30 1 2.1450 0.0416 3.1273 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393715690.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:15 Heat of formation + Delta-G solvation = 96.757071 kcal Electronic energy + Delta-G solvation = -14354.173964 eV Core-core repulsion = 11993.827875 eV Total energy + Delta-G solvation = -2360.346089 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.95735 -37.91811 -35.38173 -33.78995 -32.67159 -30.60088 -28.70400 -27.50701 -25.22243 -23.41496 -22.60065 -21.21516 -18.65985 -17.99242 -17.48674 -16.73826 -15.75321 -15.62678 -15.27790 -15.04078 -14.20959 -13.98293 -13.70038 -13.47582 -13.23661 -12.93664 -12.72301 -12.43359 -12.34694 -12.01425 -11.94328 -11.59671 -11.43395 -10.82625 -10.52017 -9.92659 -8.67376 -7.86635 -5.42480 0.83356 1.45858 1.49781 1.57524 1.71466 1.80340 2.51918 3.25070 3.68896 3.75270 3.96002 4.17236 4.29003 4.34312 4.46754 4.66838 4.84486 4.86255 4.98526 5.03180 5.15311 5.19197 5.41686 5.57079 5.69086 5.86833 5.92597 6.44091 7.14375 7.68018 7.82223 8.30326 9.10847 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.031492 B = 0.012172 C = 0.010165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.895911 B = 2299.748421 C = 2753.782098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.128 3.872 3 N -0.582 5.582 4 C -0.260 4.260 5 H 0.069 0.931 6 C -0.037 4.037 7 N -0.917 5.917 8 Si 0.953 3.047 9 H -0.290 1.290 10 H -0.297 1.297 11 H -0.266 1.266 12 C 0.207 3.793 13 C -0.002 4.002 14 C -0.073 4.073 15 N -0.311 5.311 16 N -0.137 5.137 17 N -0.286 5.286 18 C 0.076 3.924 19 H 0.057 0.943 20 H 0.032 0.968 21 H 0.056 0.944 22 H 0.060 0.940 23 H 0.037 0.963 24 H 0.248 0.752 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.190 0.810 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.037 0.048 7.596 10.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.002 3.998 3 N -0.302 5.302 4 C -0.390 4.390 5 H 0.087 0.913 6 C -0.234 4.234 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.217 1.217 10 H -0.223 1.223 11 H -0.190 1.190 12 C 0.078 3.922 13 C -0.139 4.139 14 C -0.232 4.232 15 N -0.176 5.176 16 N -0.116 5.116 17 N -0.081 5.081 18 C -0.064 4.064 19 H 0.076 0.924 20 H 0.051 0.949 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.207 0.793 28 H 0.101 0.899 29 H 0.136 0.864 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.748 -0.693 8.206 10.043 hybrid contribution -0.402 0.360 -1.790 1.870 sum -6.150 -0.333 6.416 8.894 Atomic orbital electron populations 1.22119 0.97561 1.00383 1.00854 1.21084 0.92278 0.85447 1.00942 1.44293 1.72780 1.12492 1.00642 1.19383 1.35167 0.94472 0.90024 0.91298 1.25755 0.97058 0.98206 1.02374 1.70125 1.37618 1.17230 1.31150 0.85504 0.78183 0.77130 0.80980 1.21726 1.22311 1.19010 1.19906 0.85641 0.98869 0.87768 1.24169 1.03268 0.89294 0.97131 1.23509 0.89440 1.04361 1.05888 1.74821 1.27558 1.02965 1.12298 1.77969 0.94762 1.15190 1.23642 1.47321 1.07902 1.18700 1.34158 1.22544 0.95429 0.85849 1.02528 0.92387 0.94853 0.92458 0.92182 0.94515 0.94327 0.89471 0.89651 0.79324 0.89940 0.86366 0.86072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 10.24 71.98 0.74 -4.23 16 2 C 0.13 5.24 5.98 86.38 0.52 5.76 16 3 N -0.58 -25.30 2.44 -706.33 -1.72 -27.02 16 4 C -0.26 -13.01 9.49 84.03 0.80 -12.21 16 5 H 0.07 3.37 7.92 -2.91 -0.02 3.34 16 6 C -0.04 -1.94 4.93 84.86 0.42 -1.52 16 7 N -0.92 -52.19 11.32 21.65 0.25 -51.95 16 8 Si 0.95 43.25 29.61 68.60 2.03 45.28 16 9 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 10 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 12 C 0.21 7.26 5.91 85.63 0.51 7.77 16 13 C 0.00 -0.09 6.58 41.35 0.27 0.19 16 14 C -0.07 -3.08 11.99 83.73 1.00 -2.07 16 15 N -0.31 -14.05 12.41 -58.26 -0.72 -14.77 16 16 N -0.14 -5.83 13.17 37.02 0.49 -5.35 16 17 N -0.29 -10.57 3.74 -355.71 -1.33 -11.90 16 18 C 0.08 1.93 9.98 127.77 1.27 3.20 16 19 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 20 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.06 3.03 5.32 -2.39 -0.01 3.01 16 23 H 0.04 1.34 5.61 -2.39 -0.01 1.33 16 24 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 25 H 0.09 2.88 8.04 -2.39 -0.02 2.86 16 26 H 0.09 2.38 7.24 -2.39 -0.02 2.37 16 27 H 0.19 7.13 8.06 -2.91 -0.02 7.11 16 28 H 0.08 2.23 7.15 -2.38 -0.02 2.22 16 29 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.12 2.33 7.19 -2.39 -0.02 2.32 16 Total: -1.00 -66.32 256.50 5.65 -60.68 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 1.13 Total: 8.15 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 5.53 Total: -3.12 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -3.04 Total: -110.98 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -66.32 5.65 -60.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393715690.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.436 kcal (2) G-P(sol) polarization free energy of solvation -66.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds