Wall clock time and date at job start Sun Mar 29 2020 21:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.47133 * 2 1 4 4 O 1.34244 * 126.53305 * 269.97599 * 3 2 1 5 5 C 1.34057 * 108.24557 * 180.02562 * 4 3 2 6 6 N 1.29929 * 109.27003 * 359.97438 * 5 4 3 7 7 C 1.36103 * 108.47816 * 0.02562 * 6 5 4 8 8 C 1.47227 * 126.46094 * 180.02562 * 7 6 5 9 9 O 1.21572 * 119.99760 * 179.97438 * 8 7 6 10 10 O 1.34801 * 120.00305 * 359.95944 * 8 7 6 11 11 C 1.34869 * 116.99978 * 179.97438 * 10 8 7 12 12 H 1.08000 * 120.00626 * 0.02562 * 11 10 8 13 13 C 1.38779 * 120.00107 * 180.02562 * 11 10 8 14 14 N 1.31446 * 119.99562 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00538 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47454 * 89.99458 * 15 13 11 17 17 H 1.48500 * 109.47096 * 209.99974 * 15 13 11 18 18 H 1.48505 * 109.46659 * 329.99582 * 15 13 11 19 19 H 1.09000 * 109.47293 * 60.00040 * 1 2 3 20 20 H 1.08998 * 109.47071 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47021 * 300.00283 * 1 2 3 22 22 H 1.08997 * 109.47306 * 239.99911 * 2 1 3 23 23 H 1.09000 * 109.47293 * 119.99960 * 2 1 3 24 24 H 1.07994 * 125.36742 * 179.97438 * 5 4 3 25 25 H 0.96995 * 119.99569 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2992 2.1741 -1.0787 5 6 2.7238 3.3741 -0.6580 6 7 2.7306 3.3953 0.6411 7 6 2.3025 2.1855 1.0945 8 6 2.1577 1.7802 2.5025 9 8 1.7623 0.6635 2.7759 10 8 2.4639 2.6469 3.4884 11 6 2.3085 2.2126 4.7557 12 1 1.9532 1.2101 4.9433 13 6 2.6050 3.0538 5.8189 14 7 3.0378 4.2738 5.5906 15 14 2.3903 2.4521 7.5742 16 1 3.6532 1.8257 8.0407 17 1 2.0531 3.6004 8.4534 18 1 1.2938 1.4518 7.6239 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 3.0146 4.1939 -1.2980 25 1 3.2447 4.8619 6.3337 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394318234.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:06 Heat of formation + Delta-G solvation = -61.299022 kcal Electronic energy + Delta-G solvation = -13641.821473 eV Core-core repulsion = 11008.777050 eV Total energy + Delta-G solvation = -2633.044423 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.068 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.01321 -38.77219 -35.36911 -34.39394 -33.68571 -32.14578 -28.99105 -25.83473 -24.04685 -23.15547 -21.36377 -19.87531 -17.77367 -17.47963 -16.46573 -15.88775 -14.93897 -14.64017 -14.32359 -14.27830 -14.02420 -13.16426 -12.45506 -12.38705 -11.65653 -11.51735 -11.35493 -10.98626 -10.92535 -10.43536 -10.37635 -10.18527 -9.84577 -9.16562 -8.61553 -8.51277 -6.42429 -4.07182 1.50376 2.56228 2.89362 3.17610 3.18659 3.25461 3.88714 4.05954 4.32412 4.66840 4.95141 5.16121 5.25860 5.40338 5.56107 5.80269 5.99538 6.05808 6.22426 6.36786 6.39486 6.87676 7.36841 7.89159 7.95813 8.65863 9.03894 9.85489 10.74496 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.046451 B = 0.008726 C = 0.007519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.637072 B = 3207.963508 C = 3722.780049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.039 4.039 3 C 0.016 3.984 4 O -0.206 6.206 5 C 0.154 3.846 6 N -0.441 5.441 7 C -0.017 4.017 8 C 0.469 3.531 9 O -0.549 6.549 10 O -0.186 6.186 11 C -0.380 4.380 12 H 0.099 0.901 13 C 0.042 3.958 14 N -0.851 5.851 15 Si 0.947 3.053 16 H -0.272 1.272 17 H -0.277 1.277 18 H -0.265 1.265 19 H 0.051 0.949 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.117 0.883 24 H 0.251 0.749 25 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.080 -4.149 -10.620 11.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.039 4.039 4 O -0.093 6.093 5 C -0.075 4.075 6 N -0.170 5.170 7 C -0.136 4.136 8 C 0.317 3.683 9 O -0.448 6.448 10 O -0.091 6.091 11 C -0.456 4.456 12 H 0.117 0.883 13 C -0.164 4.164 14 N -0.487 5.487 15 Si 0.771 3.229 16 H -0.198 1.198 17 H -0.202 1.202 18 H -0.189 1.189 19 H 0.070 0.930 20 H 0.086 0.914 21 H 0.085 0.915 22 H 0.096 0.904 23 H 0.135 0.865 24 H 0.267 0.733 25 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.927 -3.693 -10.038 10.868 hybrid contribution -0.119 -0.402 0.303 0.517 sum -2.046 -4.095 -9.735 10.758 Atomic orbital electron populations 1.21702 0.93544 1.02415 1.02423 1.20278 0.96812 0.85598 1.04955 1.23595 1.01391 0.95666 0.83256 1.84299 1.64416 1.24356 1.36261 1.28035 1.00695 0.87121 0.91616 1.70967 1.15420 1.21416 1.09185 1.20787 1.08121 0.90742 0.93934 1.19107 0.80976 0.84049 0.84200 1.90625 1.49030 1.21690 1.83478 1.84014 1.69472 1.40493 1.15079 1.21368 1.45455 1.00789 0.77983 0.88315 1.25437 0.95933 0.95012 0.99987 1.70042 1.39839 1.06063 1.32757 0.85623 0.79155 0.78370 0.79734 1.19771 1.20246 1.18948 0.92956 0.91439 0.91535 0.90353 0.86491 0.73296 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.89 37.16 0.37 -1.58 15 2 C -0.04 -0.59 5.93 -27.88 -0.17 -0.75 15 3 C 0.02 0.29 6.70 -35.03 -0.23 0.06 15 4 O -0.21 -3.23 10.72 6.53 0.07 -3.16 15 5 C 0.15 2.34 13.19 51.96 0.69 3.02 15 6 N -0.44 -9.39 11.36 -11.50 -0.13 -9.52 15 7 C -0.02 -0.39 7.04 -83.04 -0.58 -0.98 15 8 C 0.47 12.61 7.89 34.38 0.27 12.88 15 9 O -0.55 -14.68 14.06 -19.32 -0.27 -14.96 15 10 O -0.19 -5.71 9.75 -21.87 -0.21 -5.92 15 11 C -0.38 -11.53 9.65 30.93 0.30 -11.23 15 12 H 0.10 2.94 6.86 -52.49 -0.36 2.58 15 13 C 0.04 1.21 5.49 -17.52 -0.10 1.11 15 14 N -0.85 -25.67 13.67 55.49 0.76 -24.91 15 15 Si 0.95 21.41 29.55 -169.99 -5.02 16.39 15 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 19 H 0.05 0.63 8.14 -51.93 -0.42 0.21 15 20 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 22 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.12 1.97 6.49 -51.93 -0.34 1.64 15 24 H 0.25 2.22 8.06 -52.49 -0.42 1.80 15 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 LS Contribution 238.51 15.07 3.59 3.59 Total: -1.00 -35.18 238.51 -2.62 -37.80 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -1.95 Total: -1.83 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 0.54 Total: 2.53 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.63 Total: -34.43 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.41 Total: -24.04 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -35.18 -2.62 -37.80 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394318234.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.503 kcal (2) G-P(sol) polarization free energy of solvation -35.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds