Wall clock time and date at job start Sun Mar 29 2020 21:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.47133 * 2 1 4 4 O 1.34244 * 126.53305 * 269.97599 * 3 2 1 5 5 C 1.34057 * 108.24557 * 180.02562 * 4 3 2 6 6 N 1.29929 * 109.27003 * 359.97438 * 5 4 3 7 7 C 1.36103 * 108.47816 * 0.02562 * 6 5 4 8 8 C 1.47227 * 126.46094 * 180.02562 * 7 6 5 9 9 O 1.21572 * 119.99760 * 179.97438 * 8 7 6 10 10 O 1.34801 * 120.00305 * 359.95944 * 8 7 6 11 11 C 1.34869 * 116.99978 * 179.97438 * 10 8 7 12 12 H 1.08000 * 120.00626 * 0.02562 * 11 10 8 13 13 C 1.38779 * 120.00107 * 180.02562 * 11 10 8 14 14 N 1.31446 * 119.99562 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00538 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47454 * 89.99458 * 15 13 11 17 17 H 1.48500 * 109.47096 * 209.99974 * 15 13 11 18 18 H 1.48505 * 109.46659 * 329.99582 * 15 13 11 19 19 H 1.09000 * 109.47293 * 60.00040 * 1 2 3 20 20 H 1.08998 * 109.47071 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47021 * 300.00283 * 1 2 3 22 22 H 1.08997 * 109.47306 * 239.99911 * 2 1 3 23 23 H 1.09000 * 109.47293 * 119.99960 * 2 1 3 24 24 H 1.07994 * 125.36742 * 179.97438 * 5 4 3 25 25 H 0.96995 * 119.99569 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2992 2.1741 -1.0787 5 6 2.7238 3.3741 -0.6580 6 7 2.7306 3.3953 0.6411 7 6 2.3025 2.1855 1.0945 8 6 2.1577 1.7802 2.5025 9 8 1.7623 0.6635 2.7759 10 8 2.4639 2.6469 3.4884 11 6 2.3085 2.2126 4.7557 12 1 1.9532 1.2101 4.9433 13 6 2.6050 3.0538 5.8189 14 7 3.0378 4.2738 5.5906 15 14 2.3903 2.4521 7.5742 16 1 3.6532 1.8257 8.0407 17 1 2.0531 3.6004 8.4534 18 1 1.2938 1.4518 7.6239 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 3.0146 4.1939 -1.2980 25 1 3.2447 4.8619 6.3337 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394318234.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:05 Heat of formation + Delta-G solvation = -89.027843 kcal Electronic energy + Delta-G solvation = -13643.023885 eV Core-core repulsion = 11008.777050 eV Total energy + Delta-G solvation = -2634.246835 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.068 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.44308 -40.88973 -37.43744 -35.88466 -35.04312 -34.33327 -30.44594 -27.89208 -25.68002 -24.55919 -22.92183 -21.49204 -19.93565 -19.28785 -17.91706 -17.63372 -16.57116 -16.42469 -16.32926 -15.91895 -15.39089 -14.50045 -14.46559 -13.64655 -13.58448 -13.28806 -12.68440 -12.56307 -12.31004 -12.21662 -12.12439 -12.05374 -11.67487 -11.18615 -10.74440 -10.03143 -8.57998 -6.37737 -0.02174 1.04024 1.32266 1.43517 1.50611 1.55971 2.07718 2.15282 2.58600 2.97519 3.32688 3.55707 4.04710 4.18852 4.26724 4.52055 4.59514 4.78134 4.92842 5.06324 5.13751 5.26262 5.27893 5.75793 6.41477 6.61113 6.84461 7.70100 8.63065 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.046451 B = 0.008726 C = 0.007519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.637072 B = 3207.963508 C = 3722.780049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C 0.052 3.948 4 O -0.188 6.188 5 C 0.196 3.804 6 N -0.505 5.505 7 C -0.078 4.078 8 C 0.470 3.530 9 O -0.558 6.558 10 O -0.227 6.227 11 C -0.425 4.425 12 H 0.091 0.909 13 C -0.007 4.007 14 N -0.900 5.900 15 Si 1.028 2.972 16 H -0.257 1.257 17 H -0.259 1.259 18 H -0.258 1.258 19 H 0.072 0.928 20 H 0.095 0.905 21 H 0.029 0.971 22 H 0.124 0.876 23 H 0.094 0.906 24 H 0.314 0.686 25 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.328 -4.811 -12.224 13.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.080 4.080 3 C -0.004 4.004 4 O -0.075 6.075 5 C -0.033 4.033 6 N -0.233 5.233 7 C -0.194 4.194 8 C 0.318 3.682 9 O -0.456 6.456 10 O -0.134 6.134 11 C -0.500 4.500 12 H 0.109 0.891 13 C -0.208 4.208 14 N -0.536 5.536 15 Si 0.845 3.155 16 H -0.182 1.182 17 H -0.183 1.183 18 H -0.182 1.182 19 H 0.091 0.909 20 H 0.114 0.886 21 H 0.048 0.952 22 H 0.142 0.858 23 H 0.112 0.888 24 H 0.328 0.672 25 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.177 -4.364 -11.658 12.637 hybrid contribution -0.048 -0.221 0.502 0.551 sum -2.225 -4.585 -11.156 12.265 Atomic orbital electron populations 1.21688 0.92226 1.04075 1.01596 1.20487 0.97775 0.83742 1.06009 1.24037 0.97774 0.96213 0.82424 1.84381 1.63961 1.24409 1.34760 1.29326 0.96194 0.87368 0.90380 1.70855 1.18351 1.21726 1.12335 1.20491 1.13178 0.93153 0.92561 1.19948 0.78967 0.83604 0.85646 1.90575 1.48865 1.21879 1.84327 1.84036 1.71386 1.42092 1.15887 1.21667 1.48163 1.01305 0.78858 0.89134 1.26784 0.94386 0.94828 1.04786 1.70145 1.41023 1.07590 1.34882 0.84503 0.79767 0.78442 0.72790 1.18196 1.18340 1.18214 0.90889 0.88634 0.95155 0.85831 0.88821 0.67166 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.89 71.98 0.71 -2.76 15 2 C -0.04 -1.20 5.93 29.85 0.18 -1.02 15 3 C 0.05 1.81 6.70 25.22 0.17 1.98 15 4 O -0.19 -5.20 10.72 0.44 0.00 -5.20 15 5 C 0.20 5.31 13.19 130.52 1.72 7.03 15 6 N -0.50 -21.37 11.36 -305.21 -3.47 -24.84 15 7 C -0.08 -3.57 7.04 40.38 0.28 -3.29 15 8 C 0.47 26.55 7.89 70.18 0.55 27.11 15 9 O -0.56 -31.23 14.06 19.60 0.28 -30.95 15 10 O -0.23 -14.82 9.75 10.48 0.10 -14.72 15 11 C -0.42 -27.12 9.65 67.95 0.66 -26.47 15 12 H 0.09 5.69 6.86 -2.91 -0.02 5.67 15 13 C -0.01 -0.43 5.49 84.88 0.47 0.04 15 14 N -0.90 -56.13 13.67 21.63 0.30 -55.84 15 15 Si 1.03 44.51 29.55 68.60 2.03 46.53 15 16 H -0.26 -10.47 7.11 99.48 0.71 -9.76 15 17 H -0.26 -10.38 7.11 99.48 0.71 -9.67 15 18 H -0.26 -10.76 7.11 99.48 0.71 -10.05 15 19 H 0.07 1.53 8.14 -2.39 -0.02 1.51 15 20 H 0.09 1.86 8.14 -2.39 -0.02 1.84 15 21 H 0.03 0.96 8.14 -2.38 -0.02 0.94 15 22 H 0.12 2.37 8.14 -2.39 -0.02 2.35 15 23 H 0.09 3.11 6.49 -2.39 -0.02 3.10 15 24 H 0.31 3.81 8.06 -2.91 -0.02 3.79 15 25 H 0.28 15.70 8.31 -92.71 -0.77 14.93 15 Total: -1.00 -82.93 238.51 5.19 -77.74 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 1.21 Total: 4.64 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 4.74 Total: 2.63 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -3.17 Total: -80.68 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: 0.38 Total: -50.87 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -82.93 5.19 -77.74 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394318234.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.285 kcal (2) G-P(sol) polarization free energy of solvation -82.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds