Wall clock time and date at job start Sun Mar 29 2020 21:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30174 * 126.79902 * 2 1 4 4 O 1.20925 * 111.60250 * 179.97438 * 3 2 1 5 5 C 1.34034 * 111.56886 * 359.97438 * 4 3 2 6 6 C 1.35450 * 106.44531 * 359.97438 * 5 4 3 7 7 C 1.50706 * 128.00667 * 179.97438 * 6 5 4 8 8 N 1.46904 * 109.46808 * 260.02704 * 7 6 5 9 9 C 1.46898 * 110.99697 * 180.02562 * 8 7 6 10 10 H 1.09008 * 109.47390 * 34.99548 * 9 8 7 11 11 C 1.53002 * 109.47064 * 275.00124 * 9 8 7 12 12 C 1.50698 * 109.47298 * 154.99965 * 9 8 7 13 13 H 1.07995 * 120.00071 * 359.97438 * 12 9 8 14 14 C 1.37877 * 120.00088 * 179.97438 * 12 9 8 15 15 N 1.31515 * 119.99910 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 120.00074 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.46838 * 60.00040 * 16 14 12 18 18 H 1.48500 * 109.46907 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46904 * 299.99828 * 16 14 12 20 20 H 1.09005 * 109.46758 * 89.97833 * 1 2 3 21 21 H 1.09001 * 109.46799 * 209.97694 * 1 2 3 22 22 H 1.09000 * 109.47005 * 329.97981 * 1 2 3 23 23 H 1.08000 * 126.77781 * 180.02562 * 5 4 3 24 24 H 1.08994 * 109.47206 * 20.02911 * 7 6 5 25 25 H 1.09000 * 109.46990 * 140.03257 * 7 6 5 26 26 H 1.00899 * 111.00198 * 56.05100 * 8 7 6 27 27 H 1.08997 * 109.47223 * 299.99740 * 11 9 8 28 28 H 1.08999 * 109.47393 * 60.00025 * 11 9 8 29 29 H 1.09001 * 109.47401 * 180.02562 * 11 9 8 30 30 H 0.97009 * 120.00066 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6025 -0.6067 0.0015 6 6 2.3540 -1.1320 0.0021 7 6 1.9592 -2.5864 0.0028 8 7 1.5989 -2.9965 -1.3611 9 6 1.2070 -4.4117 -1.3990 10 1 0.6849 -4.6690 -0.4773 11 6 2.4567 -5.2834 -1.5374 12 6 0.2959 -4.6494 -2.5756 13 1 0.0338 -3.8309 -3.2296 14 6 -0.2031 -5.9118 -2.8172 15 7 0.1157 -6.9084 -2.0205 16 14 -1.3319 -6.2066 -4.2761 17 1 -0.6201 -5.8558 -5.5314 18 1 -1.7281 -7.6372 -4.3143 19 1 -2.5451 -5.3609 -4.1420 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3633 -0.8902 0.5135 22 1 -0.3633 0.8898 0.5141 23 1 4.5340 -1.1533 0.0025 24 1 2.7958 -3.1898 0.3546 25 1 1.1041 -2.7304 0.6633 26 1 2.3534 -2.8126 -2.0052 27 1 2.9789 -5.0263 -2.4589 28 1 3.1157 -5.1116 -0.6863 29 1 2.1660 -6.3336 -1.5659 30 1 -0.2357 -7.7966 -2.1902 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397906982.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:36 Heat of formation + Delta-G solvation = 53.752064 kcal Electronic energy + Delta-G solvation = -13646.369400 eV Core-core repulsion = 11251.865723 eV Total energy + Delta-G solvation = -2394.503677 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.66581 -36.52701 -34.51386 -32.70102 -31.43111 -28.70416 -28.24174 -25.29112 -24.73904 -21.13319 -20.98931 -20.23831 -17.32804 -17.27804 -16.27442 -14.93567 -14.73543 -13.98040 -13.67512 -13.41676 -12.98591 -12.64393 -12.33762 -12.16330 -11.76202 -11.47683 -11.02541 -10.93069 -10.73131 -10.53315 -10.18247 -10.00597 -9.55560 -9.22823 -9.04201 -8.38893 -7.31487 -6.01482 -4.04945 1.71261 2.48305 3.33000 3.36985 3.40489 3.48325 4.41007 4.45583 4.82252 5.17849 5.29010 5.30406 5.60841 5.70699 5.79983 5.93320 5.99341 6.16116 6.21233 6.46809 6.63469 6.78544 7.03150 7.28943 7.69448 7.84251 8.21868 8.46097 8.50102 8.55510 9.01982 9.60594 11.05500 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.048163 B = 0.007107 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.223551 B = 3938.879920 C = 4267.118423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.037 3.963 3 N -0.379 5.379 4 O 0.089 5.911 5 C -0.071 4.071 6 C -0.179 4.179 7 C 0.132 3.868 8 N -0.678 5.678 9 C 0.212 3.788 10 H 0.035 0.965 11 C -0.170 4.170 12 C -0.496 4.496 13 H 0.062 0.938 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.898 3.102 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.277 1.277 20 H 0.084 0.916 21 H 0.083 0.917 22 H 0.066 0.934 23 H 0.212 0.788 24 H 0.033 0.967 25 H 0.078 0.922 26 H 0.326 0.674 27 H 0.028 0.972 28 H 0.005 0.995 29 H 0.090 0.910 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.788 8.515 4.421 10.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.122 4.122 3 N -0.086 5.086 4 O 0.025 5.975 5 C -0.153 4.153 6 C -0.184 4.184 7 C 0.002 3.998 8 N -0.308 5.308 9 C 0.104 3.896 10 H 0.053 0.947 11 C -0.229 4.229 12 C -0.535 4.535 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.203 1.203 20 H 0.103 0.897 21 H 0.102 0.898 22 H 0.085 0.915 23 H 0.228 0.772 24 H 0.051 0.949 25 H 0.097 0.903 26 H 0.143 0.857 27 H 0.047 0.953 28 H 0.024 0.976 29 H 0.108 0.892 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.875 9.853 4.500 11.504 hybrid contribution 0.369 -1.667 -0.700 1.845 sum 4.244 8.186 3.800 9.973 Atomic orbital electron populations 1.20120 0.85889 1.02969 1.03833 1.23521 0.99129 0.88211 1.01384 1.73789 0.89521 1.24422 1.20916 1.84756 1.21637 1.23059 1.68023 1.25752 1.00780 0.83631 1.05120 1.21517 0.91818 0.98348 1.06670 1.20156 0.99175 0.86227 0.94225 1.60836 1.42164 1.24220 1.03543 1.19196 0.92358 0.80125 0.97886 0.94729 1.22447 0.97884 1.06137 0.96472 1.21105 1.27269 0.94123 1.10995 0.91971 1.24943 0.96715 0.96074 0.96738 1.69870 1.45170 1.00790 1.37943 0.86562 0.81113 0.76876 0.82841 1.20376 1.21434 1.20270 0.89733 0.89814 0.91470 0.77184 0.94946 0.90333 0.85718 0.95288 0.97610 0.89161 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.39 36.01 0.37 -0.62 16 2 C 0.04 0.59 7.33 -82.10 -0.60 -0.02 16 3 N -0.38 -6.18 12.07 33.42 0.40 -5.78 16 4 O 0.09 1.30 11.20 17.19 0.19 1.49 16 5 C -0.07 -0.92 12.26 29.74 0.36 -0.56 16 6 C -0.18 -2.77 5.84 -104.42 -0.61 -3.38 16 7 C 0.13 2.25 5.97 -4.97 -0.03 2.22 16 8 N -0.68 -13.81 6.22 -109.21 -0.68 -14.49 16 9 C 0.21 5.13 2.57 -68.87 -0.18 4.95 16 10 H 0.03 0.91 7.80 -51.92 -0.40 0.51 16 11 C -0.17 -3.94 8.94 37.16 0.33 -3.61 16 12 C -0.50 -13.45 8.84 -34.44 -0.30 -13.76 16 13 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 14 C 0.06 1.52 5.30 -17.82 -0.09 1.43 16 15 N -0.90 -25.24 11.32 55.43 0.63 -24.62 16 16 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 21 H 0.08 1.15 7.99 -51.93 -0.41 0.73 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.21 1.89 8.06 -52.49 -0.42 1.47 16 24 H 0.03 0.53 7.44 -51.93 -0.39 0.14 16 25 H 0.08 1.36 7.90 -51.93 -0.41 0.95 16 26 H 0.33 6.43 8.47 -39.29 -0.33 6.10 16 27 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 28 H 0.00 0.10 7.45 -51.93 -0.39 -0.28 16 29 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 260.81 15.07 3.93 3.93 Total: -1.00 -28.98 260.81 -5.18 -34.16 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -3.89 Total: 2.41 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -0.75 Total: -13.33 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.35 Total: -44.88 kcal Atomic # 8 Polarization: 1.30 SS G_CDS: 0.19 Total: 1.49 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.98 -5.18 -34.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397906982.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.910 kcal (2) G-P(sol) polarization free energy of solvation -28.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds