Wall clock time and date at job start Sun Mar 29 2020 21:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30174 * 126.79902 * 2 1 4 4 O 1.20925 * 111.60250 * 179.97438 * 3 2 1 5 5 C 1.34034 * 111.56886 * 359.97438 * 4 3 2 6 6 C 1.35450 * 106.44531 * 359.97438 * 5 4 3 7 7 C 1.50706 * 128.00667 * 179.97438 * 6 5 4 8 8 N 1.46904 * 109.46808 * 260.02704 * 7 6 5 9 9 C 1.46898 * 110.99697 * 180.02562 * 8 7 6 10 10 H 1.09008 * 109.47390 * 34.99548 * 9 8 7 11 11 C 1.53002 * 109.47064 * 275.00124 * 9 8 7 12 12 C 1.50698 * 109.47298 * 154.99965 * 9 8 7 13 13 H 1.07995 * 120.00071 * 359.97438 * 12 9 8 14 14 C 1.37877 * 120.00088 * 179.97438 * 12 9 8 15 15 N 1.31515 * 119.99910 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 120.00074 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.46838 * 60.00040 * 16 14 12 18 18 H 1.48500 * 109.46907 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46904 * 299.99828 * 16 14 12 20 20 H 1.09005 * 109.46758 * 89.97833 * 1 2 3 21 21 H 1.09001 * 109.46799 * 209.97694 * 1 2 3 22 22 H 1.09000 * 109.47005 * 329.97981 * 1 2 3 23 23 H 1.08000 * 126.77781 * 180.02562 * 5 4 3 24 24 H 1.08994 * 109.47206 * 20.02911 * 7 6 5 25 25 H 1.09000 * 109.46990 * 140.03257 * 7 6 5 26 26 H 1.00899 * 111.00198 * 56.05100 * 8 7 6 27 27 H 1.08997 * 109.47223 * 299.99740 * 11 9 8 28 28 H 1.08999 * 109.47393 * 60.00025 * 11 9 8 29 29 H 1.09001 * 109.47401 * 180.02562 * 11 9 8 30 30 H 0.97009 * 120.00066 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6025 -0.6067 0.0015 6 6 2.3540 -1.1320 0.0021 7 6 1.9592 -2.5864 0.0028 8 7 1.5989 -2.9965 -1.3611 9 6 1.2070 -4.4117 -1.3990 10 1 0.6849 -4.6690 -0.4773 11 6 2.4567 -5.2834 -1.5374 12 6 0.2959 -4.6494 -2.5756 13 1 0.0338 -3.8309 -3.2296 14 6 -0.2031 -5.9118 -2.8172 15 7 0.1157 -6.9084 -2.0205 16 14 -1.3319 -6.2066 -4.2761 17 1 -0.6201 -5.8558 -5.5314 18 1 -1.7281 -7.6372 -4.3143 19 1 -2.5451 -5.3609 -4.1420 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3633 -0.8902 0.5135 22 1 -0.3633 0.8898 0.5141 23 1 4.5340 -1.1533 0.0025 24 1 2.7958 -3.1898 0.3546 25 1 1.1041 -2.7304 0.6633 26 1 2.3534 -2.8126 -2.0052 27 1 2.9789 -5.0263 -2.4589 28 1 3.1157 -5.1116 -0.6863 29 1 2.1660 -6.3336 -1.5659 30 1 -0.2357 -7.7966 -2.1902 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397906982.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:36 Heat of formation + Delta-G solvation = 34.563367 kcal Electronic energy + Delta-G solvation = -13647.201485 eV Core-core repulsion = 11251.865723 eV Total energy + Delta-G solvation = -2395.335762 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.84170 -38.12599 -35.92745 -34.39143 -32.87821 -30.28881 -29.47345 -27.23288 -26.30057 -22.43002 -22.19797 -22.00337 -18.67210 -18.50920 -18.03597 -16.76724 -16.24251 -15.48198 -15.17020 -14.91887 -14.19308 -14.14358 -13.74598 -13.54596 -13.30172 -13.11967 -12.79757 -12.75685 -12.35594 -12.14738 -11.97760 -11.87512 -11.06310 -10.74168 -10.46212 -10.38013 -8.95306 -8.08017 -6.18574 0.61743 1.27555 1.45051 1.45764 1.53637 2.43528 2.46348 3.20665 3.27693 3.69652 3.83944 4.02014 4.31320 4.63020 4.63914 4.72807 4.75354 4.79271 4.91788 4.97554 5.03555 5.12913 5.30583 5.44622 5.72271 5.84755 6.29564 6.65407 6.81792 6.95973 7.37496 7.51385 8.96985 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.048163 B = 0.007107 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.223551 B = 3938.879920 C = 4267.118423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.023 3.977 3 N -0.400 5.400 4 O 0.090 5.910 5 C -0.039 4.039 6 C -0.207 4.207 7 C 0.141 3.859 8 N -0.682 5.682 9 C 0.217 3.783 10 H 0.007 0.993 11 C -0.158 4.158 12 C -0.515 4.515 13 H 0.053 0.947 14 C 0.011 3.989 15 N -0.921 5.921 16 Si 0.956 3.044 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.275 1.275 20 H 0.078 0.922 21 H 0.081 0.919 22 H 0.082 0.918 23 H 0.255 0.745 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.332 0.668 27 H 0.031 0.969 28 H 0.031 0.969 29 H 0.061 0.939 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.673 9.023 4.246 11.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.136 4.136 3 N -0.108 5.108 4 O 0.028 5.972 5 C -0.121 4.121 6 C -0.211 4.211 7 C 0.011 3.989 8 N -0.312 5.312 9 C 0.109 3.891 10 H 0.025 0.975 11 C -0.217 4.217 12 C -0.554 4.554 13 H 0.071 0.929 14 C -0.187 4.187 15 N -0.562 5.562 16 Si 0.782 3.218 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.200 1.200 20 H 0.096 0.904 21 H 0.100 0.900 22 H 0.101 0.899 23 H 0.271 0.729 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.149 0.851 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.768 10.384 4.329 12.219 hybrid contribution 0.148 -1.785 -0.603 1.890 sum 4.916 8.598 3.726 10.582 Atomic orbital electron populations 1.20136 0.85299 1.03688 1.03606 1.23836 0.99932 0.88511 1.01326 1.73794 0.90078 1.24850 1.22069 1.84739 1.21023 1.23873 1.67590 1.26461 1.01484 0.82814 1.01372 1.21374 0.92974 0.97277 1.09462 1.20012 0.99318 0.87509 0.92016 1.60652 1.43063 1.21732 1.05789 1.18934 0.92255 0.82473 0.95432 0.97513 1.22252 0.97824 1.03912 0.97747 1.21426 1.28125 0.94023 1.11839 0.92915 1.25654 0.98026 0.95945 0.99093 1.69990 1.45951 1.00998 1.39227 0.85643 0.79346 0.76788 0.80004 1.19834 1.21007 1.20027 0.90355 0.89981 0.89904 0.72907 0.93523 0.91330 0.85122 0.94952 0.94999 0.92059 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.92 10.39 71.24 0.74 -1.18 16 2 C 0.02 0.69 7.33 43.58 0.32 1.01 16 3 N -0.40 -12.41 12.07 -49.56 -0.60 -13.01 16 4 O 0.09 2.41 11.20 71.69 0.80 3.21 16 5 C -0.04 -0.89 12.26 67.18 0.82 -0.07 16 6 C -0.21 -5.97 5.84 -19.73 -0.12 -6.09 16 7 C 0.14 4.60 5.97 85.56 0.51 5.11 16 8 N -0.68 -27.18 6.22 -499.44 -3.11 -30.29 16 9 C 0.22 10.50 2.57 44.17 0.11 10.61 16 10 H 0.01 0.37 7.80 -2.38 -0.02 0.35 16 11 C -0.16 -7.17 8.94 71.98 0.64 -6.53 16 12 C -0.52 -28.01 8.84 25.60 0.23 -27.79 16 13 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 14 C 0.01 0.60 5.30 84.65 0.45 1.05 16 15 N -0.92 -52.06 11.32 21.45 0.24 -51.82 16 16 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 21 H 0.08 2.24 7.99 -2.39 -0.02 2.22 16 22 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.26 3.27 8.06 -2.91 -0.02 3.25 16 24 H 0.05 1.40 7.44 -2.39 -0.02 1.38 16 25 H 0.07 2.36 7.90 -2.39 -0.02 2.34 16 26 H 0.33 12.56 8.47 -89.69 -0.76 11.80 16 27 H 0.03 1.40 8.13 -2.39 -0.02 1.38 16 28 H 0.03 1.23 7.45 -2.39 -0.02 1.22 16 29 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 30 H 0.26 14.11 8.31 -92.70 -0.77 13.33 16 Total: -1.00 -61.27 260.81 3.46 -57.81 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.38 Total: 12.51 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 3.71 Total: -23.87 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -3.46 Total: -95.12 kcal Atomic # 8 Polarization: 2.41 SS G_CDS: 0.80 Total: 3.21 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -61.27 3.46 -57.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397906982.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.371 kcal (2) G-P(sol) polarization free energy of solvation -61.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds