Wall clock time and date at job start Sun Mar 29 2020 21:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30174 * 126.80621 * 2 1 4 4 O 1.20929 * 111.60331 * 179.75438 * 3 2 1 5 5 C 1.34038 * 111.56690 * 0.45735 * 4 3 2 6 6 C 1.35451 * 106.44815 * 359.55546 * 5 4 3 7 7 C 1.50697 * 128.00789 * 180.24329 * 6 5 4 8 8 N 1.46904 * 109.46973 * 260.02711 * 7 6 5 9 9 C 1.46901 * 110.99830 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47117 * 324.99754 * 9 8 7 11 11 C 1.53005 * 109.47337 * 85.00391 * 9 8 7 12 12 C 1.50707 * 109.47288 * 205.00194 * 9 8 7 13 13 H 1.07999 * 119.99444 * 359.97438 * 12 9 8 14 14 C 1.37868 * 120.00213 * 179.97438 * 12 9 8 15 15 N 1.31521 * 120.00137 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 120.00100 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.47157 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47216 * 120.00194 * 16 14 12 19 19 H 1.48502 * 109.47248 * 240.00131 * 16 14 12 20 20 H 1.09000 * 109.47256 * 269.96235 * 1 2 3 21 21 H 1.09004 * 109.46740 * 29.95653 * 1 2 3 22 22 H 1.09000 * 109.47685 * 149.95755 * 1 2 3 23 23 H 1.08002 * 126.77872 * 179.82977 * 5 4 3 24 24 H 1.08997 * 109.47612 * 20.02945 * 7 6 5 25 25 H 1.09008 * 109.47074 * 140.03235 * 7 6 5 26 26 H 1.00900 * 110.99937 * 56.04893 * 8 7 6 27 27 H 1.09006 * 109.46515 * 299.99713 * 11 9 8 28 28 H 1.08994 * 109.47226 * 59.99812 * 11 9 8 29 29 H 1.08995 * 109.46778 * 180.02562 * 11 9 8 30 30 H 0.97000 * 120.00230 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7251 0.0048 5 6 3.6025 -0.6070 -0.0012 6 6 2.3539 -1.1322 -0.0007 7 6 1.9590 -2.5865 -0.0010 8 7 1.5984 -2.9956 -1.3651 9 6 1.2064 -4.4108 -1.4039 10 1 1.8047 -4.9734 -0.6871 11 6 -0.2752 -4.5398 -1.0441 12 6 1.4364 -4.9581 -2.7891 13 1 1.8336 -4.3183 -3.5633 14 6 1.1397 -6.2752 -3.0680 15 7 0.6555 -7.0541 -2.1254 16 14 1.4241 -6.9533 -4.7852 17 1 1.9710 -5.8820 -5.6562 18 1 2.3908 -8.0787 -4.7192 19 1 0.1371 -7.4385 -5.3453 20 1 -0.3634 -0.0007 1.0277 21 1 -0.3633 0.8904 -0.5132 22 1 -0.3634 -0.8896 -0.5145 23 1 4.5339 -1.1537 -0.0014 24 1 2.7956 -3.1903 0.3503 25 1 1.1039 -2.7309 0.6596 26 1 2.3529 -2.8113 -2.0092 27 1 -0.4414 -4.1440 -0.0422 28 1 -0.8734 -3.9773 -1.7609 29 1 -0.5658 -5.5899 -1.0725 30 1 0.4464 -7.9808 -2.3217 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397906984.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:37 Heat of formation + Delta-G solvation = 52.460278 kcal Electronic energy + Delta-G solvation = -13652.465703 eV Core-core repulsion = 11257.906010 eV Total energy + Delta-G solvation = -2394.559693 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.66134 -36.45502 -34.48250 -32.72618 -31.41445 -28.74880 -28.23476 -25.57824 -24.63602 -21.16408 -20.97488 -19.83117 -17.33861 -17.29704 -16.43504 -15.07524 -14.60433 -13.91486 -13.64820 -13.55208 -13.06758 -12.72723 -12.33711 -12.16957 -11.85925 -11.23196 -10.95748 -10.91559 -10.77177 -10.31653 -10.18442 -10.11312 -9.56916 -9.21679 -8.85559 -8.52852 -7.37040 -6.07855 -4.14497 1.71941 2.47496 3.25610 3.33865 3.38025 3.48971 4.36096 4.44377 4.82506 5.19907 5.23495 5.31438 5.59927 5.72171 5.74131 5.90961 5.98929 6.19669 6.23395 6.45819 6.81556 7.07143 7.15805 7.42643 7.73107 7.82625 8.21021 8.30460 8.49862 8.58336 8.95602 9.51968 10.98493 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.050561 B = 0.006893 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.658208 B = 4061.101014 C = 4276.788400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.036 3.964 3 N -0.379 5.379 4 O 0.089 5.911 5 C -0.069 4.069 6 C -0.179 4.179 7 C 0.132 3.868 8 N -0.683 5.683 9 C 0.211 3.789 10 H 0.002 0.998 11 C -0.125 4.125 12 C -0.519 4.519 13 H 0.060 0.940 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.283 1.283 20 H 0.073 0.927 21 H 0.070 0.930 22 H 0.095 0.905 23 H 0.212 0.788 24 H 0.033 0.967 25 H 0.078 0.922 26 H 0.332 0.668 27 H 0.004 0.996 28 H 0.032 0.968 29 H 0.081 0.919 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.907 8.871 4.681 10.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 N -0.086 5.086 4 O 0.025 5.975 5 C -0.151 4.151 6 C -0.184 4.184 7 C 0.002 3.998 8 N -0.314 5.314 9 C 0.104 3.896 10 H 0.020 0.980 11 C -0.183 4.183 12 C -0.557 4.557 13 H 0.079 0.921 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.724 3.276 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.209 1.209 20 H 0.092 0.908 21 H 0.089 0.911 22 H 0.114 0.886 23 H 0.229 0.771 24 H 0.051 0.949 25 H 0.096 0.904 26 H 0.149 0.851 27 H 0.023 0.977 28 H 0.051 0.949 29 H 0.100 0.900 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.980 10.212 4.759 11.440 hybrid contribution 1.009 -1.807 -0.808 2.222 sum 2.990 8.405 3.951 9.757 Atomic orbital electron populations 1.20185 0.86035 1.04354 1.02803 1.23506 0.99066 0.88230 1.01547 1.73787 0.89550 1.24462 1.20830 1.84759 1.21611 1.23095 1.68026 1.25772 1.00841 0.83573 1.04947 1.21521 0.91838 0.98319 1.06683 1.20170 0.99121 0.86245 0.94252 1.60754 1.42653 1.24311 1.03716 1.19142 0.93028 0.81064 0.96368 0.98005 1.21725 0.98187 1.02675 0.95750 1.21286 1.43075 0.95482 0.95889 0.92140 1.24914 0.94954 0.96883 0.97223 1.69904 1.43974 1.06568 1.32407 0.86466 0.77878 0.78880 0.84332 1.19748 1.21068 1.20922 0.90800 0.91132 0.88647 0.77100 0.94864 0.90382 0.85074 0.97656 0.94887 0.90036 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.39 36.01 0.37 -0.67 16 2 C 0.04 0.57 7.33 -82.10 -0.60 -0.03 16 3 N -0.38 -6.18 12.07 33.43 0.40 -5.78 16 4 O 0.09 1.30 11.20 17.18 0.19 1.50 16 5 C -0.07 -0.92 12.26 29.74 0.36 -0.55 16 6 C -0.18 -2.79 5.84 -104.42 -0.61 -3.40 16 7 C 0.13 2.27 5.97 -4.98 -0.03 2.24 16 8 N -0.68 -14.00 6.29 -109.21 -0.69 -14.69 16 9 C 0.21 5.16 2.60 -68.86 -0.18 4.98 16 10 H 0.00 0.06 7.80 -51.93 -0.41 -0.34 16 11 C -0.13 -3.01 9.19 37.16 0.34 -2.66 16 12 C -0.52 -13.91 8.59 -34.44 -0.30 -14.21 16 13 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 15 N -0.89 -24.94 11.32 55.43 0.63 -24.31 16 16 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 21 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 23 H 0.21 1.96 8.06 -52.49 -0.42 1.54 16 24 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 25 H 0.08 1.35 7.44 -51.92 -0.39 0.97 16 26 H 0.33 6.77 8.22 -39.29 -0.32 6.45 16 27 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 260.80 15.07 3.93 3.93 Total: -1.00 -28.90 260.80 -5.17 -34.07 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -3.88 Total: 2.08 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -0.73 Total: -12.71 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.34 Total: -44.78 kcal Atomic # 8 Polarization: 1.30 SS G_CDS: 0.19 Total: 1.50 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.90 -5.17 -34.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397906984.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.527 kcal (2) G-P(sol) polarization free energy of solvation -28.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds