Wall clock time and date at job start Sun Mar 29 2020 21:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30174 * 126.80621 * 2 1 4 4 O 1.20929 * 111.60331 * 179.75438 * 3 2 1 5 5 C 1.34038 * 111.56690 * 0.45735 * 4 3 2 6 6 C 1.35451 * 106.44815 * 359.55546 * 5 4 3 7 7 C 1.50697 * 128.00789 * 180.24329 * 6 5 4 8 8 N 1.46904 * 109.46973 * 260.02711 * 7 6 5 9 9 C 1.46901 * 110.99830 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47117 * 324.99754 * 9 8 7 11 11 C 1.53005 * 109.47337 * 85.00391 * 9 8 7 12 12 C 1.50707 * 109.47288 * 205.00194 * 9 8 7 13 13 H 1.07999 * 119.99444 * 359.97438 * 12 9 8 14 14 C 1.37868 * 120.00213 * 179.97438 * 12 9 8 15 15 N 1.31521 * 120.00137 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 120.00100 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.47157 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47216 * 120.00194 * 16 14 12 19 19 H 1.48502 * 109.47248 * 240.00131 * 16 14 12 20 20 H 1.09000 * 109.47256 * 269.96235 * 1 2 3 21 21 H 1.09004 * 109.46740 * 29.95653 * 1 2 3 22 22 H 1.09000 * 109.47685 * 149.95755 * 1 2 3 23 23 H 1.08002 * 126.77872 * 179.82977 * 5 4 3 24 24 H 1.08997 * 109.47612 * 20.02945 * 7 6 5 25 25 H 1.09008 * 109.47074 * 140.03235 * 7 6 5 26 26 H 1.00900 * 110.99937 * 56.04893 * 8 7 6 27 27 H 1.09006 * 109.46515 * 299.99713 * 11 9 8 28 28 H 1.08994 * 109.47226 * 59.99812 * 11 9 8 29 29 H 1.08995 * 109.46778 * 180.02562 * 11 9 8 30 30 H 0.97000 * 120.00230 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7251 0.0048 5 6 3.6025 -0.6070 -0.0012 6 6 2.3539 -1.1322 -0.0007 7 6 1.9590 -2.5865 -0.0010 8 7 1.5984 -2.9956 -1.3651 9 6 1.2064 -4.4108 -1.4039 10 1 1.8047 -4.9734 -0.6871 11 6 -0.2752 -4.5398 -1.0441 12 6 1.4364 -4.9581 -2.7891 13 1 1.8336 -4.3183 -3.5633 14 6 1.1397 -6.2752 -3.0680 15 7 0.6555 -7.0541 -2.1254 16 14 1.4241 -6.9533 -4.7852 17 1 1.9710 -5.8820 -5.6562 18 1 2.3908 -8.0787 -4.7192 19 1 0.1371 -7.4385 -5.3453 20 1 -0.3634 -0.0007 1.0277 21 1 -0.3633 0.8904 -0.5132 22 1 -0.3634 -0.8896 -0.5145 23 1 4.5339 -1.1537 -0.0014 24 1 2.7956 -3.1903 0.3503 25 1 1.1039 -2.7309 0.6596 26 1 2.3529 -2.8113 -2.0092 27 1 -0.4414 -4.1440 -0.0422 28 1 -0.8734 -3.9773 -1.7609 29 1 -0.5658 -5.5899 -1.0725 30 1 0.4464 -7.9808 -2.3217 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397906984.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:37 Heat of formation + Delta-G solvation = 33.400481 kcal Electronic energy + Delta-G solvation = -13653.292198 eV Core-core repulsion = 11257.906010 eV Total energy + Delta-G solvation = -2395.386188 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.83865 -38.06370 -35.91955 -34.39296 -32.86787 -30.36522 -29.45902 -27.45512 -26.29220 -22.46945 -22.12518 -21.67545 -18.80115 -18.50413 -18.07480 -16.90103 -16.12901 -15.48671 -15.19720 -15.05280 -14.23303 -14.11131 -13.87208 -13.47446 -13.30982 -13.03784 -12.74764 -12.62955 -12.36799 -12.18734 -11.93202 -11.90827 -10.92159 -10.72346 -10.57532 -10.36887 -9.05523 -8.12989 -6.26549 0.60949 1.27164 1.41740 1.44556 1.55395 2.41327 2.43950 3.16280 3.27366 3.68153 3.83795 4.02541 4.30215 4.63016 4.68759 4.70647 4.76827 4.83420 4.98012 5.04481 5.11871 5.24001 5.31544 5.49471 5.67996 5.87793 6.24539 6.46278 6.76415 6.99241 7.36611 7.44103 8.92703 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.050561 B = 0.006893 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.658208 B = 4061.101014 C = 4276.788400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.025 3.975 3 N -0.400 5.400 4 O 0.089 5.911 5 C -0.041 4.041 6 C -0.206 4.206 7 C 0.140 3.860 8 N -0.681 5.681 9 C 0.216 3.784 10 H -0.024 1.024 11 C -0.114 4.114 12 C -0.536 4.536 13 H 0.058 0.942 14 C 0.015 3.985 15 N -0.917 5.917 16 Si 0.959 3.041 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.281 1.281 20 H 0.091 0.909 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.253 0.747 24 H 0.041 0.959 25 H 0.074 0.926 26 H 0.333 0.667 27 H 0.025 0.975 28 H 0.027 0.973 29 H 0.056 0.944 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.707 9.409 4.433 11.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.134 4.134 3 N -0.108 5.108 4 O 0.027 5.973 5 C -0.123 4.123 6 C -0.211 4.211 7 C 0.011 3.989 8 N -0.312 5.312 9 C 0.108 3.892 10 H -0.006 1.006 11 C -0.173 4.173 12 C -0.575 4.575 13 H 0.076 0.924 14 C -0.184 4.184 15 N -0.556 5.556 16 Si 0.785 3.215 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.207 1.207 20 H 0.109 0.891 21 H 0.097 0.903 22 H 0.100 0.900 23 H 0.269 0.731 24 H 0.059 0.941 25 H 0.092 0.908 26 H 0.150 0.850 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.788 10.774 4.518 12.011 hybrid contribution 0.801 -1.938 -0.683 2.206 sum 3.589 8.835 3.835 10.279 Atomic orbital electron populations 1.20209 0.85100 1.04033 1.03855 1.23856 1.00014 0.88331 1.01193 1.73791 0.90059 1.24897 1.22071 1.84744 1.21095 1.23788 1.67696 1.26449 1.01553 0.82863 1.01391 1.21366 0.92985 0.97250 1.09480 1.20037 0.99263 0.87488 0.92116 1.60638 1.43167 1.21607 1.05833 1.18928 0.92755 0.82831 0.94658 1.00597 1.21553 0.97923 1.00985 0.96825 1.21612 1.43066 0.95873 0.96922 0.92399 1.25680 0.94749 0.97260 1.00749 1.70020 1.44629 1.06824 1.34156 0.85485 0.77734 0.78213 0.80040 1.19230 1.20580 1.20734 0.89078 0.90326 0.89981 0.73141 0.94135 0.90780 0.84997 0.95577 0.95398 0.92535 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.96 10.39 71.24 0.74 -1.22 16 2 C 0.02 0.75 7.33 43.58 0.32 1.07 16 3 N -0.40 -12.39 12.07 -49.54 -0.60 -12.99 16 4 O 0.09 2.41 11.20 71.64 0.80 3.21 16 5 C -0.04 -0.96 12.26 67.18 0.82 -0.13 16 6 C -0.21 -6.03 5.84 -19.73 -0.12 -6.15 16 7 C 0.14 4.65 5.97 85.56 0.51 5.16 16 8 N -0.68 -27.43 6.29 -499.43 -3.14 -30.57 16 9 C 0.22 10.58 2.60 44.17 0.11 10.69 16 10 H -0.02 -1.25 7.80 -2.39 -0.02 -1.27 16 11 C -0.11 -5.51 9.19 71.98 0.66 -4.84 16 12 C -0.54 -28.69 8.59 25.60 0.22 -28.47 16 13 H 0.06 3.06 7.62 -2.91 -0.02 3.03 16 14 C 0.01 0.81 5.30 84.65 0.45 1.26 16 15 N -0.92 -51.65 11.32 21.45 0.24 -51.40 16 16 Si 0.96 42.66 29.54 68.60 2.03 44.69 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 20 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 21 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 22 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 23 H 0.25 3.59 8.06 -2.91 -0.02 3.57 16 24 H 0.04 1.29 8.06 -2.39 -0.02 1.27 16 25 H 0.07 2.50 7.44 -2.38 -0.02 2.48 16 26 H 0.33 13.25 8.22 -89.69 -0.74 12.51 16 27 H 0.03 1.09 7.45 -2.38 -0.02 1.08 16 28 H 0.03 1.31 8.14 -2.39 -0.02 1.30 16 29 H 0.06 3.00 6.07 -2.39 -0.01 2.99 16 30 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -60.71 260.80 3.46 -57.25 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.40 Total: 12.44 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 3.72 Total: -22.63 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -3.50 Total: -94.96 kcal Atomic # 8 Polarization: 2.41 SS G_CDS: 0.80 Total: 3.21 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -60.71 3.46 -57.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397906984.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.651 kcal (2) G-P(sol) polarization free energy of solvation -60.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds