Wall clock time and date at job start Sun Mar 29 2020 21:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 5 5 C 1.36939 * 120.00137 * 85.00012 * 4 2 1 6 6 H 1.08007 * 119.99859 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00280 * 180.02562 * 5 4 2 8 8 N 1.31615 * 119.99825 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00060 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46953 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47254 * 119.99689 * 9 7 5 12 12 H 1.48500 * 109.46786 * 239.99620 * 9 7 5 13 13 C 1.50699 * 109.46866 * 119.99952 * 2 1 3 14 14 N 1.31866 * 119.63879 * 74.99746 * 13 2 1 15 15 C 1.31847 * 121.75529 * 179.97438 * 14 13 2 16 16 C 1.38238 * 120.81540 * 0.02562 * 15 14 13 17 17 C 1.38586 * 119.19286 * 0.02562 * 16 15 14 18 18 C 1.38426 * 119.63659 * 254.72935 * 13 2 1 19 19 F 1.35103 * 120.44283 * 359.97438 * 18 13 2 20 20 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 22 22 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 23 23 H 0.96998 * 120.00176 * 265.00572 * 4 2 1 24 24 H 0.97001 * 120.00287 * 179.97438 * 8 7 5 25 25 H 1.08001 * 119.59432 * 179.97438 * 15 14 13 26 26 H 1.08004 * 120.40121 * 180.02562 * 16 15 14 27 27 H 1.08001 * 120.80165 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1493 -0.0075 -2.3757 6 1 1.8928 1.0406 -2.4241 7 6 2.6115 -0.6620 -3.5092 8 7 2.9246 -1.9390 -3.4501 9 14 2.7906 0.2700 -5.1181 10 1 2.3767 1.6824 -4.9207 11 1 4.2075 0.2263 -5.5605 12 1 1.9295 -0.3578 -6.1523 13 6 2.0323 -0.7104 1.2305 14 7 1.9699 -2.0260 1.2951 15 6 2.3977 -2.6900 2.3508 16 6 2.9313 -2.0236 3.4381 17 6 3.0134 -0.6405 3.4095 18 6 2.5592 0.0249 2.2783 19 9 2.6259 1.3722 2.2036 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 2.2491 -1.6317 -1.1525 24 1 3.2472 -2.3965 -4.2422 25 1 2.3295 -3.7677 2.3667 26 1 3.2801 -2.5743 4.2993 27 1 3.4253 -0.0936 4.2448 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528825208.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:34 Heat of formation + Delta-G solvation = 0.548390 kcal Electronic energy + Delta-G solvation = -13479.536472 eV Core-core repulsion = 10959.265405 eV Total energy + Delta-G solvation = -2520.271067 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.70437 -39.83833 -35.49579 -32.49271 -31.76833 -29.97106 -28.15312 -24.48025 -23.63189 -22.84573 -20.22267 -17.74931 -17.13369 -16.76314 -16.00014 -15.53827 -14.57806 -13.98691 -13.70640 -13.42623 -13.30646 -12.87460 -12.59180 -12.20967 -11.99653 -11.39179 -10.83677 -10.77083 -10.48439 -10.02712 -9.74265 -9.64777 -9.19632 -8.91209 -8.55347 -6.93897 -5.72714 -3.01446 1.15811 1.30755 3.46045 3.51306 3.53905 3.88670 4.24203 4.58859 4.67590 4.79795 4.94678 5.08293 5.56646 5.62709 5.81081 5.87537 5.98782 6.08747 6.18794 6.33282 6.60025 6.74139 6.83647 7.09412 7.72819 8.20603 8.45489 9.57445 10.13695 10.52649 11.49543 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.043020 B = 0.008645 C = 0.008054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.710458 B = 3238.262894 C = 3475.703601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.217 3.783 3 H 0.065 0.935 4 N -0.713 5.713 5 C -0.241 4.241 6 H 0.073 0.927 7 C -0.012 4.012 8 N -0.928 5.928 9 Si 0.908 3.092 10 H -0.279 1.279 11 H -0.292 1.292 12 H -0.291 1.291 13 C 0.123 3.877 14 N -0.440 5.440 15 C 0.091 3.909 16 C -0.163 4.163 17 C -0.113 4.113 18 C 0.045 3.955 19 F -0.130 7.130 20 H 0.055 0.945 21 H 0.035 0.965 22 H 0.062 0.938 23 H 0.394 0.606 24 H 0.255 0.745 25 H 0.160 0.840 26 H 0.139 0.861 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.030 1.172 14.088 14.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.106 3.894 3 H 0.083 0.917 4 N -0.355 5.355 5 C -0.372 4.372 6 H 0.091 0.909 7 C -0.208 4.208 8 N -0.576 5.576 9 Si 0.739 3.261 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.218 1.218 13 C -0.018 4.018 14 N -0.148 5.148 15 C -0.067 4.067 16 C -0.183 4.183 17 C -0.139 4.139 18 C 0.023 3.977 19 F -0.109 7.109 20 H 0.074 0.926 21 H 0.054 0.946 22 H 0.081 0.919 23 H 0.229 0.771 24 H 0.065 0.935 25 H 0.177 0.823 26 H 0.157 0.843 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.355 0.879 13.210 13.308 hybrid contribution 0.658 0.767 -0.081 1.014 sum -0.697 1.646 13.129 13.250 Atomic orbital electron populations 1.22406 0.97626 1.01681 1.00186 1.19189 0.92877 0.94340 0.83013 0.91726 1.42404 1.77782 1.11098 1.04179 1.19330 1.36752 0.94063 0.87054 0.90945 1.24761 1.01989 0.95987 0.98091 1.69705 1.50511 1.08658 1.28737 0.86103 0.77287 0.78826 0.83903 1.20462 1.21885 1.21825 1.22217 0.94268 0.89974 0.95293 1.67600 1.14570 1.07626 1.24969 1.22904 0.94330 1.00786 0.88681 1.21971 1.01846 0.93770 1.00754 1.21551 0.99720 0.95330 0.97344 1.18624 1.03965 0.78192 0.96966 1.91488 1.94350 1.28570 1.96479 0.92602 0.94636 0.91889 0.77073 0.93534 0.82314 0.84348 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 9.47 37.16 0.35 -2.76 15 2 C 0.22 4.75 3.13 -69.08 -0.22 4.53 15 3 H 0.06 1.42 7.19 -51.93 -0.37 1.05 15 4 N -0.71 -19.02 5.10 -54.55 -0.28 -19.29 15 5 C -0.24 -6.90 9.93 -15.06 -0.15 -7.05 15 6 H 0.07 1.99 7.83 -52.48 -0.41 1.58 15 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 15 8 N -0.93 -28.83 13.06 55.49 0.72 -28.11 15 9 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 15 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 11 H -0.29 -7.34 7.11 56.52 0.40 -6.93 15 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 15 13 C 0.12 2.40 5.72 -82.51 -0.47 1.93 15 14 N -0.44 -8.36 9.57 -9.42 -0.09 -8.45 15 15 C 0.09 1.31 11.18 -17.54 -0.20 1.11 15 16 C -0.16 -1.95 10.11 -39.45 -0.40 -2.35 15 17 C -0.11 -1.48 10.16 -39.21 -0.40 -1.88 15 18 C 0.04 0.75 7.28 -39.27 -0.29 0.47 15 19 F -0.13 -2.21 16.28 2.25 0.04 -2.17 15 20 H 0.05 1.13 8.14 -51.93 -0.42 0.71 15 21 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.06 1.26 8.14 -51.93 -0.42 0.84 15 23 H 0.39 11.28 7.24 -40.82 -0.30 10.99 15 24 H 0.25 7.59 8.31 -40.82 -0.34 7.25 15 25 H 0.16 1.79 8.06 -52.49 -0.42 1.37 15 26 H 0.14 1.12 8.06 -52.48 -0.42 0.69 15 27 H 0.14 1.41 8.06 -52.49 -0.42 0.98 15 LS Contribution 246.53 15.07 3.72 3.72 Total: -1.00 -32.07 246.53 -5.53 -37.60 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -2.75 Total: 5.44 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -1.86 Total: -6.45 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.36 Total: -55.86 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.07 -5.53 -37.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528825208.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.148 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds