Wall clock time and date at job start Sun Mar 29 2020 21:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 5 5 C 1.36939 * 120.00137 * 85.00012 * 4 2 1 6 6 H 1.08007 * 119.99859 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00280 * 180.02562 * 5 4 2 8 8 N 1.31615 * 119.99825 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00060 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46953 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47254 * 119.99689 * 9 7 5 12 12 H 1.48500 * 109.46786 * 239.99620 * 9 7 5 13 13 C 1.50699 * 109.46866 * 119.99952 * 2 1 3 14 14 N 1.31866 * 119.63879 * 74.99746 * 13 2 1 15 15 C 1.31847 * 121.75529 * 179.97438 * 14 13 2 16 16 C 1.38238 * 120.81540 * 0.02562 * 15 14 13 17 17 C 1.38586 * 119.19286 * 0.02562 * 16 15 14 18 18 C 1.38426 * 119.63659 * 254.72935 * 13 2 1 19 19 F 1.35103 * 120.44283 * 359.97438 * 18 13 2 20 20 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 22 22 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 23 23 H 0.96998 * 120.00176 * 265.00572 * 4 2 1 24 24 H 0.97001 * 120.00287 * 179.97438 * 8 7 5 25 25 H 1.08001 * 119.59432 * 179.97438 * 15 14 13 26 26 H 1.08004 * 120.40121 * 180.02562 * 16 15 14 27 27 H 1.08001 * 120.80165 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1493 -0.0075 -2.3757 6 1 1.8928 1.0406 -2.4241 7 6 2.6115 -0.6620 -3.5092 8 7 2.9246 -1.9390 -3.4501 9 14 2.7906 0.2700 -5.1181 10 1 2.3767 1.6824 -4.9207 11 1 4.2075 0.2263 -5.5605 12 1 1.9295 -0.3578 -6.1523 13 6 2.0323 -0.7104 1.2305 14 7 1.9699 -2.0260 1.2951 15 6 2.3977 -2.6900 2.3508 16 6 2.9313 -2.0236 3.4381 17 6 3.0134 -0.6405 3.4095 18 6 2.5592 0.0249 2.2783 19 9 2.6259 1.3722 2.2036 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 2.2491 -1.6317 -1.1525 24 1 3.2472 -2.3965 -4.2422 25 1 2.3295 -3.7677 2.3667 26 1 3.2801 -2.5743 4.2993 27 1 3.4253 -0.0936 4.2448 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528825208.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:34 Heat of formation + Delta-G solvation = -21.556967 kcal Electronic energy + Delta-G solvation = -13480.495032 eV Core-core repulsion = 10959.265405 eV Total energy + Delta-G solvation = -2521.229627 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.97361 -41.06859 -37.25875 -34.31800 -33.08864 -31.53685 -29.89785 -26.24067 -25.14638 -24.18629 -21.79852 -19.54842 -18.49318 -18.14205 -17.39181 -16.81139 -16.45264 -15.58258 -15.28054 -14.84742 -14.72924 -14.33813 -13.98267 -13.78580 -13.37145 -13.17641 -12.82420 -12.64301 -12.23135 -11.91526 -11.78553 -11.07704 -10.80561 -10.40316 -9.80837 -9.05851 -7.94425 -5.24644 -0.03126 0.19944 1.46727 1.48428 1.58731 2.53952 2.71126 3.05129 3.32951 3.46728 3.62501 3.83866 4.04412 4.12093 4.38358 4.57611 4.61791 4.77246 4.87644 4.98270 5.01702 5.12083 5.40603 5.48543 5.72645 6.25954 7.00461 7.33140 8.06388 8.34493 9.29454 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.043020 B = 0.008645 C = 0.008054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.710458 B = 3238.262894 C = 3475.703601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.209 3.791 3 H 0.057 0.943 4 N -0.728 5.728 5 C -0.245 4.245 6 H 0.078 0.922 7 C -0.076 4.076 8 N -0.970 5.970 9 Si 0.978 3.022 10 H -0.264 1.264 11 H -0.293 1.293 12 H -0.292 1.292 13 C 0.089 3.911 14 N -0.482 5.482 15 C 0.079 3.921 16 C -0.135 4.135 17 C -0.102 4.102 18 C 0.029 3.971 19 F -0.137 7.137 20 H 0.044 0.956 21 H 0.064 0.936 22 H 0.051 0.949 23 H 0.380 0.620 24 H 0.251 0.749 25 H 0.188 0.812 26 H 0.191 0.809 27 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.619 1.409 16.208 16.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.100 3.900 3 H 0.075 0.925 4 N -0.369 5.369 5 C -0.376 4.376 6 H 0.096 0.904 7 C -0.268 4.268 8 N -0.620 5.620 9 Si 0.806 3.194 10 H -0.188 1.188 11 H -0.220 1.220 12 H -0.219 1.219 13 C -0.050 4.050 14 N -0.191 5.191 15 C -0.078 4.078 16 C -0.154 4.154 17 C -0.128 4.128 18 C 0.007 3.993 19 F -0.116 7.116 20 H 0.063 0.937 21 H 0.083 0.917 22 H 0.070 0.930 23 H 0.213 0.787 24 H 0.060 0.940 25 H 0.204 0.796 26 H 0.208 0.792 27 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -0.970 1.165 15.372 15.446 hybrid contribution 0.525 0.638 -0.534 0.984 sum -0.445 1.803 14.838 14.954 Atomic orbital electron populations 1.22198 0.96114 1.01158 1.01018 1.19295 0.93828 0.93905 0.83008 0.92532 1.42542 1.78288 1.10650 1.05391 1.19728 1.35443 0.94351 0.88121 0.90413 1.25621 1.02612 0.96925 1.01610 1.69872 1.52370 1.10379 1.29415 0.85013 0.76837 0.78185 0.79354 1.18841 1.21968 1.21868 1.21719 0.97180 0.90667 0.95458 1.67463 1.16362 1.07722 1.27570 1.23529 0.93785 1.02191 0.88337 1.22514 0.98538 0.93375 1.00964 1.22040 0.98034 0.96017 0.96759 1.18806 1.04688 0.77976 0.97849 1.91465 1.94501 1.29041 1.96604 0.93712 0.91707 0.92997 0.78704 0.93981 0.79560 0.79160 0.80174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.78 9.47 71.98 0.68 -5.10 15 2 C 0.21 9.38 3.13 44.25 0.14 9.51 15 3 H 0.06 2.57 7.19 -2.39 -0.02 2.55 15 4 N -0.73 -40.14 5.10 -326.50 -1.67 -41.81 15 5 C -0.24 -14.34 9.93 84.03 0.83 -13.51 15 6 H 0.08 4.34 7.83 -2.91 -0.02 4.32 15 7 C -0.08 -4.52 5.50 84.86 0.47 -4.05 15 8 N -0.97 -62.00 13.06 21.65 0.28 -61.71 15 9 Si 0.98 47.59 29.55 68.60 2.03 49.61 15 10 H -0.26 -12.02 7.11 99.48 0.71 -11.32 15 11 H -0.29 -14.16 7.11 99.48 0.71 -13.45 15 12 H -0.29 -14.10 7.11 99.48 0.71 -13.39 15 13 C 0.09 3.46 5.72 42.60 0.24 3.71 15 14 N -0.48 -18.24 9.57 -183.71 -1.76 -19.99 15 15 C 0.08 2.09 11.18 84.69 0.95 3.03 15 16 C -0.13 -2.58 10.11 22.35 0.23 -2.35 15 17 C -0.10 -2.29 10.16 22.51 0.23 -2.06 15 18 C 0.03 0.93 7.28 22.47 0.16 1.10 15 19 F -0.14 -4.55 16.28 44.97 0.73 -3.82 15 20 H 0.04 1.85 8.14 -2.39 -0.02 1.83 15 21 H 0.06 2.16 8.14 -2.39 -0.02 2.14 15 22 H 0.05 2.12 8.14 -2.39 -0.02 2.10 15 23 H 0.38 22.70 7.24 -92.71 -0.67 22.03 15 24 H 0.25 15.42 8.31 -92.71 -0.77 14.64 15 25 H 0.19 3.65 8.06 -2.91 -0.02 3.62 15 26 H 0.19 1.72 8.06 -2.91 -0.02 1.70 15 27 H 0.18 2.60 8.06 -2.91 -0.02 2.57 15 Total: -1.00 -72.14 246.53 4.06 -68.09 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.51 Total: 19.35 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 3.93 Total: -9.71 kcal Atomic # 7 Polarization: -120.38 SS G_CDS: -3.14 Total: -123.52 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.73 Total: -3.82 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.61 kcal Total: -72.14 4.06 -68.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528825208.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.529 kcal (2) G-P(sol) polarization free energy of solvation -72.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds