Wall clock time and date at job start Sun Mar 29 2020 21:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46510 * 109.47513 * 2 1 4 4 N 1.28602 * 124.61432 * 90.02297 * 3 2 1 5 5 C 1.31376 * 108.71495 * 179.97438 * 4 3 2 6 6 C 1.39675 * 105.90336 * 359.97438 * 5 4 3 7 7 C 1.50700 * 127.05499 * 179.74044 * 6 5 4 8 8 N 1.46901 * 109.47189 * 94.99906 * 7 6 5 9 9 C 1.46903 * 110.99773 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46641 * 180.02562 * 9 8 7 11 11 H 1.07990 * 120.00238 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99735 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99705 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00038 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47082 * 59.99864 * 14 12 10 16 16 H 1.48492 * 109.47178 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46786 * 299.99994 * 14 12 10 18 18 N 1.28593 * 124.62012 * 269.98849 * 3 2 1 19 19 H 1.08995 * 109.47411 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47437 * 300.00287 * 1 2 3 21 21 H 1.09005 * 109.47019 * 59.99934 * 1 2 3 22 22 H 1.09004 * 109.47082 * 240.00602 * 2 1 3 23 23 H 1.08994 * 109.47411 * 119.99897 * 2 1 3 24 24 H 1.07994 * 127.05191 * 180.02562 * 5 4 3 25 25 H 1.08998 * 109.47182 * 215.00208 * 7 6 5 26 26 H 1.09000 * 109.46771 * 335.00164 * 7 6 5 27 27 H 1.00900 * 110.99966 * 56.04560 * 8 7 6 28 28 H 1.08997 * 109.47240 * 299.99722 * 9 8 7 29 29 H 1.09001 * 109.47285 * 59.99962 * 9 8 7 30 30 H 0.97003 * 119.99880 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2623 2.0699 1.0584 5 6 2.6840 3.2609 0.6985 6 6 2.6844 3.2609 -0.6983 7 6 3.0807 4.3964 -1.6063 8 7 4.4884 4.2423 -1.9973 9 6 4.9109 5.3344 -2.8843 10 6 6.3567 5.1424 -3.2638 11 1 6.9066 4.2942 -2.8838 12 6 6.9772 6.0496 -4.0963 13 7 6.3075 7.0827 -4.5587 14 14 8.7690 5.8112 -4.5674 15 1 8.9276 4.5126 -5.2701 16 1 9.1962 6.9151 -5.4639 17 1 9.6079 5.8166 -3.3420 18 7 2.2622 2.0700 -1.0582 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5138 0.8899 24 1 2.9721 4.0733 1.3491 25 1 2.4529 4.3854 -2.4972 26 1 2.9509 5.3432 -1.0819 27 1 4.6477 3.3439 -2.4280 28 1 4.2958 5.3303 -3.7841 29 1 4.7938 6.2875 -2.3685 30 1 6.7440 7.7207 -5.1447 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530234771.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:10 Heat of formation + Delta-G solvation = 102.201761 kcal Electronic energy + Delta-G solvation = -13169.237795 eV Core-core repulsion = 10809.127805 eV Total energy + Delta-G solvation = -2360.109990 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.28527 -35.79583 -34.51605 -32.64603 -31.93344 -30.32546 -27.41903 -24.96668 -23.79168 -21.75365 -21.42579 -20.35019 -17.31879 -16.41992 -16.26202 -15.07163 -14.68598 -14.38517 -14.20272 -13.74215 -13.35225 -12.85089 -12.41859 -12.17949 -11.72180 -11.60935 -11.22472 -11.01149 -10.73611 -10.61020 -10.53423 -10.07802 -9.88261 -9.22176 -8.91503 -8.45233 -7.29572 -6.00952 -4.02685 2.02839 2.44169 2.72202 3.36177 3.39613 3.43231 4.23109 4.46052 4.64696 4.77306 4.90780 5.16409 5.24234 5.35051 5.44893 5.51723 5.64362 5.74588 5.97618 6.15253 6.40950 6.51816 6.92127 7.23976 7.43413 7.79575 8.13417 8.39001 8.58348 8.60668 9.05886 9.61917 11.10173 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.065439 B = 0.005252 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.775748 B = 5329.763712 C = 5436.571365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.139 3.861 3 N -0.165 5.165 4 N -0.300 5.300 5 C -0.012 4.012 6 C 0.022 3.978 7 C 0.144 3.856 8 N -0.684 5.684 9 C 0.194 3.806 10 C -0.514 4.514 11 H 0.061 0.939 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.900 3.100 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.276 1.276 18 N -0.290 5.290 19 H 0.082 0.918 20 H 0.065 0.935 21 H 0.066 0.934 22 H 0.105 0.895 23 H 0.104 0.896 24 H 0.196 0.804 25 H 0.037 0.963 26 H 0.087 0.913 27 H 0.332 0.668 28 H -0.011 1.011 29 H 0.031 0.969 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.502 -11.331 8.469 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.019 3.981 3 N -0.065 5.065 4 N -0.141 5.141 5 C -0.195 4.195 6 C -0.141 4.141 7 C 0.013 3.987 8 N -0.316 5.316 9 C 0.067 3.933 10 C -0.553 4.553 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.728 3.272 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.201 1.201 18 N -0.133 5.133 19 H 0.101 0.899 20 H 0.084 0.916 21 H 0.085 0.915 22 H 0.123 0.877 23 H 0.122 0.878 24 H 0.213 0.787 25 H 0.055 0.945 26 H 0.105 0.895 27 H 0.148 0.852 28 H 0.007 0.993 29 H 0.049 0.951 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.713 -12.185 8.928 18.519 hybrid contribution 0.845 0.593 -1.085 1.497 sum -9.868 -11.592 7.843 17.125 Atomic orbital electron populations 1.22171 0.93554 1.03494 1.03567 1.21847 0.95668 0.75133 1.05425 1.48014 1.45896 1.13141 0.99481 1.73963 1.18077 1.05741 1.16288 1.24611 1.04317 0.95530 0.95003 1.23367 1.02344 0.93905 0.94475 1.20135 0.91450 0.92195 0.94962 1.60724 1.14761 1.07389 1.48676 1.19589 0.95364 0.89209 0.89097 1.21135 0.96004 1.09939 1.28222 0.92031 1.24974 0.98387 0.95136 0.95993 1.69951 1.36742 1.13210 1.33858 0.86533 0.84787 0.77556 0.78361 1.20297 1.21329 1.20146 1.74005 1.18125 1.05576 1.15586 0.89917 0.91585 0.91466 0.87667 0.87777 0.78725 0.94528 0.89467 0.85169 0.99336 0.95072 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 10.24 37.15 0.38 -0.93 16 2 C 0.14 1.32 7.26 -4.04 -0.03 1.29 16 3 N -0.16 -2.41 3.95 -10.62 -0.04 -2.45 16 4 N -0.30 -4.64 12.05 30.67 0.37 -4.27 16 5 C -0.01 -0.18 12.16 -17.21 -0.21 -0.39 16 6 C 0.02 0.39 6.87 -82.25 -0.56 -0.18 16 7 C 0.14 2.67 6.27 -4.98 -0.03 2.64 16 8 N -0.68 -15.21 6.48 -116.34 -0.75 -15.96 16 9 C 0.19 5.12 5.44 -4.97 -0.03 5.09 16 10 C -0.51 -14.77 9.32 -34.44 -0.32 -15.09 16 11 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 14 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 N -0.29 -4.94 12.05 33.71 0.41 -4.54 16 19 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 20 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.20 2.48 8.06 -52.49 -0.42 2.05 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 27 H 0.33 7.39 8.72 -39.29 -0.34 7.04 16 28 H -0.01 -0.31 8.14 -51.93 -0.42 -0.73 16 29 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 LS Contribution 267.85 15.07 4.04 4.04 Total: -1.00 -32.53 267.85 -5.28 -37.82 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -4.12 Total: 0.74 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -0.90 Total: -6.05 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.72 Total: -53.41 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.53 -5.28 -37.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530234771.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.017 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds