Wall clock time and date at job start Sun Mar 29 2020 21:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47025 * 2 1 4 4 C 1.41380 * 126.80347 * 124.99658 * 3 2 1 5 5 C 1.35451 * 103.98649 * 179.77327 * 4 3 2 6 6 C 1.50706 * 126.77668 * 180.22754 * 5 4 3 7 7 N 1.46895 * 109.47186 * 90.00426 * 6 5 4 8 8 C 1.46902 * 111.00059 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47062 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00036 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99925 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00095 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99762 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47043 * 90.00058 * 13 11 9 15 15 H 1.48505 * 109.46954 * 209.99712 * 13 11 9 16 16 H 1.48495 * 109.47424 * 329.99773 * 13 11 9 17 17 O 1.34041 * 106.44823 * 0.22995 * 5 4 3 18 18 N 1.20916 * 111.56681 * 359.97438 * 17 5 4 19 19 H 1.09007 * 109.47304 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.47521 * 299.99480 * 1 2 3 21 21 H 1.08995 * 109.47888 * 60.00117 * 1 2 3 22 22 H 1.09006 * 109.46889 * 240.00604 * 2 1 3 23 23 H 1.08997 * 109.47170 * 120.00069 * 2 1 3 24 24 H 1.08002 * 128.00820 * 0.04548 * 4 3 2 25 25 H 1.09003 * 109.46799 * 210.00794 * 6 5 4 26 26 H 1.09005 * 109.46817 * 330.00360 * 6 5 4 27 27 H 1.00906 * 110.99879 * 303.95320 * 7 6 5 28 28 H 1.08996 * 109.47219 * 300.00082 * 8 7 6 29 29 H 1.09003 * 109.47034 * 59.99737 * 8 7 6 30 30 H 0.96996 * 120.00261 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9267 2.0029 0.9273 5 6 3.0628 3.2790 0.4941 6 6 3.9140 4.3567 1.1148 7 7 5.2570 4.3229 0.5207 8 6 6.1168 5.3618 1.1035 9 6 7.4831 5.2959 0.4713 10 1 7.6919 4.5567 -0.2878 11 6 8.4665 6.1802 0.8613 12 7 9.6588 6.1231 0.3093 13 14 8.1052 7.4594 2.1738 14 1 8.4248 6.8998 3.5117 15 1 8.9358 8.6662 1.9308 16 1 6.6679 7.8291 2.1224 17 8 2.2910 3.3942 -0.5958 18 7 1.7265 2.3561 -0.8523 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5137 0.8900 21 1 -0.3635 0.5138 -0.8899 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5138 0.8899 24 1 3.3965 1.5367 1.7808 25 1 3.4594 5.3301 0.9304 26 1 3.9876 4.1877 2.1892 27 1 5.6744 3.4098 0.6220 28 1 5.6777 6.3423 0.9194 29 1 6.2056 5.1994 2.1777 30 1 10.3507 6.7450 0.5839 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591742663.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:24 Heat of formation + Delta-G solvation = 50.976263 kcal Electronic energy + Delta-G solvation = -13170.018219 eV Core-core repulsion = 10775.394174 eV Total energy + Delta-G solvation = -2394.624045 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.71591 -36.00215 -35.44675 -32.89454 -31.73769 -30.96701 -27.90476 -24.91427 -24.23460 -22.75028 -21.24281 -19.62742 -17.41708 -17.28763 -16.61430 -15.20116 -14.69666 -14.48710 -14.29774 -13.78227 -13.70558 -13.33298 -12.63671 -12.43958 -12.00603 -11.81441 -11.61531 -11.53449 -10.89015 -10.75081 -10.59246 -9.92634 -9.89906 -9.38316 -9.23323 -8.65685 -7.70321 -6.10792 -4.10087 1.63529 2.34403 3.24627 3.28940 3.33098 3.34240 4.21359 4.36933 4.46664 4.96268 5.03732 5.11782 5.18392 5.22417 5.30087 5.39467 5.60244 5.62947 5.77913 5.80082 5.91230 6.05708 6.18759 6.61909 6.87366 7.46535 7.72225 8.11849 8.44258 8.55452 8.96888 9.49565 11.02362 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.076563 B = 0.005343 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.625006 B = 5238.893493 C = 5337.230346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.043 4.043 3 C 0.015 3.985 4 C -0.240 4.240 5 C 0.000 4.000 6 C 0.129 3.871 7 N -0.674 5.674 8 C 0.165 3.835 9 C -0.520 4.520 10 H 0.080 0.920 11 C 0.070 3.930 12 N -0.898 5.898 13 Si 0.879 3.121 14 H -0.277 1.277 15 H -0.285 1.285 16 H -0.266 1.266 17 O 0.105 5.895 18 N -0.370 5.370 19 H 0.061 0.939 20 H 0.055 0.945 21 H 0.060 0.940 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.168 0.832 25 H 0.091 0.909 26 H 0.058 0.942 27 H 0.340 0.660 28 H 0.031 0.969 29 H -0.016 1.016 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.344 -8.941 3.926 18.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 C -0.144 4.144 4 C -0.262 4.262 5 C -0.065 4.065 6 C -0.002 4.002 7 N -0.306 5.306 8 C 0.038 3.962 9 C -0.558 4.558 10 H 0.098 0.902 11 C -0.132 4.132 12 N -0.536 5.536 13 Si 0.706 3.294 14 H -0.203 1.203 15 H -0.211 1.211 16 H -0.191 1.191 17 O 0.039 5.961 18 N -0.074 5.074 19 H 0.080 0.920 20 H 0.074 0.926 21 H 0.079 0.921 22 H 0.100 0.900 23 H 0.102 0.898 24 H 0.185 0.815 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.158 0.842 28 H 0.049 0.951 29 H 0.002 0.998 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.128 -8.394 2.295 18.325 hybrid contribution 0.669 0.092 2.248 2.348 sum -15.458 -8.302 4.543 18.125 Atomic orbital electron populations 1.21724 0.94323 1.01905 1.02548 1.19911 0.96340 0.88369 1.03493 1.23509 0.99060 0.98142 0.93684 1.22409 1.05051 0.94073 1.04710 1.24622 0.95648 0.97552 0.88636 1.20442 0.89983 0.94863 0.94876 1.60551 1.00571 1.09737 1.59768 1.20064 0.93020 0.90838 0.92316 1.21008 0.93036 1.18655 1.23113 0.90199 1.24900 0.94844 0.97162 0.96330 1.69892 1.03185 1.37778 1.42782 0.86811 0.78811 0.81612 0.82185 1.20288 1.21053 1.19062 1.84829 1.44559 1.29290 1.37417 1.73787 1.17724 0.93471 1.22442 0.91987 0.92609 0.92107 0.90043 0.89767 0.81473 0.89073 0.92390 0.84194 0.95053 0.99820 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.88 37.16 0.37 -0.96 16 2 C -0.04 -0.43 6.53 -27.89 -0.18 -0.61 16 3 C 0.01 0.20 6.59 -82.10 -0.54 -0.34 16 4 C -0.24 -3.24 11.05 -39.38 -0.44 -3.67 16 5 C 0.00 0.00 7.00 -35.30 -0.25 -0.25 16 6 C 0.13 2.02 6.25 -4.98 -0.03 1.99 16 7 N -0.67 -13.48 6.48 -116.34 -0.75 -14.24 16 8 C 0.16 3.84 4.51 -4.98 -0.02 3.81 16 9 C -0.52 -14.62 9.87 -34.44 -0.34 -14.96 16 10 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 11 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 12 N -0.90 -27.29 13.96 55.43 0.77 -26.51 16 13 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 16 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 17 O 0.10 1.75 11.20 17.17 0.19 1.95 16 18 N -0.37 -5.97 12.06 33.43 0.40 -5.57 16 19 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 20 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 25 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.34 6.59 8.71 -39.29 -0.34 6.25 16 28 H 0.03 0.74 7.20 -51.93 -0.37 0.37 16 29 H -0.02 -0.35 7.57 -51.93 -0.39 -0.75 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 263.96 15.07 3.98 3.98 Total: -1.00 -30.91 263.96 -5.69 -36.59 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -4.08 Total: 0.57 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -1.53 Total: -13.09 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.42 Total: -46.32 kcal Atomic # 8 Polarization: 1.75 SS G_CDS: 0.19 Total: 1.95 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.91 -5.69 -36.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591742663.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.568 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds