Wall clock time and date at job start Sun Mar 29 2020 21:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47025 * 2 1 4 4 C 1.41380 * 126.80347 * 124.99658 * 3 2 1 5 5 C 1.35451 * 103.98649 * 179.77327 * 4 3 2 6 6 C 1.50706 * 126.77668 * 180.22754 * 5 4 3 7 7 N 1.46895 * 109.47186 * 90.00426 * 6 5 4 8 8 C 1.46902 * 111.00059 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47062 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00036 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99925 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00095 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99762 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47043 * 90.00058 * 13 11 9 15 15 H 1.48505 * 109.46954 * 209.99712 * 13 11 9 16 16 H 1.48495 * 109.47424 * 329.99773 * 13 11 9 17 17 O 1.34041 * 106.44823 * 0.22995 * 5 4 3 18 18 N 1.20916 * 111.56681 * 359.97438 * 17 5 4 19 19 H 1.09007 * 109.47304 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.47521 * 299.99480 * 1 2 3 21 21 H 1.08995 * 109.47888 * 60.00117 * 1 2 3 22 22 H 1.09006 * 109.46889 * 240.00604 * 2 1 3 23 23 H 1.08997 * 109.47170 * 120.00069 * 2 1 3 24 24 H 1.08002 * 128.00820 * 0.04548 * 4 3 2 25 25 H 1.09003 * 109.46799 * 210.00794 * 6 5 4 26 26 H 1.09005 * 109.46817 * 330.00360 * 6 5 4 27 27 H 1.00906 * 110.99879 * 303.95320 * 7 6 5 28 28 H 1.08996 * 109.47219 * 300.00082 * 8 7 6 29 29 H 1.09003 * 109.47034 * 59.99737 * 8 7 6 30 30 H 0.96996 * 120.00261 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9267 2.0029 0.9273 5 6 3.0628 3.2790 0.4941 6 6 3.9140 4.3567 1.1148 7 7 5.2570 4.3229 0.5207 8 6 6.1168 5.3618 1.1035 9 6 7.4831 5.2959 0.4713 10 1 7.6919 4.5567 -0.2878 11 6 8.4665 6.1802 0.8613 12 7 9.6588 6.1231 0.3093 13 14 8.1052 7.4594 2.1738 14 1 8.4248 6.8998 3.5117 15 1 8.9358 8.6662 1.9308 16 1 6.6679 7.8291 2.1224 17 8 2.2910 3.3942 -0.5958 18 7 1.7265 2.3561 -0.8523 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5137 0.8900 21 1 -0.3635 0.5138 -0.8899 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5138 0.8899 24 1 3.3965 1.5367 1.7808 25 1 3.4594 5.3301 0.9304 26 1 3.9876 4.1877 2.1892 27 1 5.6744 3.4098 0.6220 28 1 5.6777 6.3423 0.9194 29 1 6.2056 5.1994 2.1777 30 1 10.3507 6.7450 0.5839 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591742663.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:24 Heat of formation + Delta-G solvation = 28.994417 kcal Electronic energy + Delta-G solvation = -13170.971423 eV Core-core repulsion = 10775.394174 eV Total energy + Delta-G solvation = -2395.577249 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.84544 -37.53333 -36.40338 -34.79714 -33.12950 -32.03173 -29.64121 -26.33003 -25.22340 -23.87312 -23.10074 -20.71060 -19.09004 -18.50155 -18.15478 -16.71117 -16.12693 -15.76462 -15.42547 -15.27210 -14.84736 -14.50431 -14.35162 -13.70996 -13.46428 -13.08107 -12.65518 -12.59557 -12.43178 -12.32371 -11.79222 -11.77961 -11.51271 -10.95162 -10.80620 -10.43171 -9.25184 -8.28599 -6.34477 0.47013 1.29366 1.38676 1.41824 1.52541 2.15694 2.36683 3.05898 3.26856 3.39883 3.64757 4.09280 4.17973 4.27595 4.30965 4.42742 4.53227 4.71122 4.79629 4.83945 4.98002 5.05512 5.11051 5.15617 5.34147 5.51643 5.86731 6.48048 6.56606 6.74187 7.30262 7.30837 8.88347 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.076563 B = 0.005343 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.625006 B = 5238.893493 C = 5337.230346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.046 4.046 3 C 0.017 3.983 4 C -0.229 4.229 5 C -0.017 4.017 6 C 0.134 3.866 7 N -0.691 5.691 8 C 0.175 3.825 9 C -0.533 4.533 10 H 0.033 0.967 11 C 0.006 3.994 12 N -0.950 5.950 13 Si 0.955 3.045 14 H -0.263 1.263 15 H -0.285 1.285 16 H -0.244 1.244 17 O 0.076 5.924 18 N -0.396 5.396 19 H 0.086 0.914 20 H 0.053 0.947 21 H 0.042 0.958 22 H 0.086 0.914 23 H 0.110 0.890 24 H 0.197 0.803 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.341 0.659 28 H 0.033 0.967 29 H 0.001 0.999 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.825 -9.308 6.049 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 C -0.142 4.142 4 C -0.251 4.251 5 C -0.081 4.081 6 C 0.004 3.996 7 N -0.323 5.323 8 C 0.047 3.953 9 C -0.571 4.571 10 H 0.052 0.948 11 C -0.191 4.191 12 N -0.590 5.590 13 Si 0.778 3.222 14 H -0.188 1.188 15 H -0.211 1.211 16 H -0.167 1.167 17 O 0.015 5.985 18 N -0.105 5.105 19 H 0.105 0.895 20 H 0.073 0.927 21 H 0.061 0.939 22 H 0.104 0.896 23 H 0.129 0.871 24 H 0.214 0.786 25 H 0.114 0.886 26 H 0.105 0.895 27 H 0.159 0.841 28 H 0.051 0.949 29 H 0.019 0.981 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.630 -8.759 4.420 20.176 hybrid contribution 1.114 0.069 1.506 1.874 sum -16.516 -8.690 5.926 19.581 Atomic orbital electron populations 1.21701 0.93624 1.03227 1.01597 1.20145 0.96927 0.86245 1.05028 1.24195 0.98134 0.99261 0.92658 1.22827 1.04066 0.93198 1.05003 1.24668 0.96213 0.98325 0.88897 1.20454 0.87442 0.95546 0.96151 1.60370 1.02040 1.09079 1.60837 1.19805 0.90811 0.91950 0.92704 1.21332 0.95912 1.17577 1.22304 0.94848 1.25937 0.94337 0.99764 0.99074 1.70063 1.04623 1.39290 1.45022 0.85600 0.79738 0.78005 0.78869 1.18784 1.21081 1.16694 1.84793 1.45456 1.29965 1.38328 1.73794 1.18890 0.93998 1.23776 0.89532 0.92745 0.93876 0.89555 0.87116 0.78612 0.88645 0.89550 0.84101 0.94864 0.98089 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.88 71.98 0.71 -1.57 16 2 C -0.05 -0.79 6.53 29.85 0.19 -0.60 16 3 C 0.02 0.43 6.59 43.57 0.29 0.71 16 4 C -0.23 -5.62 11.05 22.40 0.25 -5.37 16 5 C -0.02 -0.50 7.00 25.04 0.18 -0.32 16 6 C 0.13 3.92 6.25 85.56 0.53 4.46 16 7 N -0.69 -26.98 6.48 -521.97 -3.38 -30.36 16 8 C 0.18 7.90 4.51 85.56 0.39 8.29 16 9 C -0.53 -30.41 9.87 25.60 0.25 -30.16 16 10 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 11 C 0.01 0.36 5.47 84.65 0.46 0.82 16 12 N -0.95 -59.05 13.96 21.45 0.30 -58.75 16 13 Si 0.96 42.47 27.47 68.60 1.88 44.35 16 14 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 17 O 0.08 2.55 11.20 71.63 0.80 3.35 16 18 N -0.40 -12.61 12.06 -49.54 -0.60 -13.21 16 19 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 20 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 21 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 23 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.20 3.52 8.06 -2.91 -0.02 3.49 16 25 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.34 13.04 8.71 -89.69 -0.78 12.26 16 28 H 0.03 1.49 7.20 -2.39 -0.02 1.48 16 29 H 0.00 0.06 7.57 -2.39 -0.02 0.04 16 30 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -68.21 263.96 2.55 -65.65 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.29 Total: 12.70 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 3.25 Total: -23.74 kcal Atomic # 7 Polarization: -98.64 SS G_CDS: -3.68 Total: -102.32 kcal Atomic # 8 Polarization: 2.55 SS G_CDS: 0.80 Total: 3.35 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.88 Total: 44.35 kcal Total: -68.21 2.55 -65.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591742663.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.649 kcal (2) G-P(sol) polarization free energy of solvation -68.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds