Wall clock time and date at job start Sun Mar 29 2020 21:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00392 * 2 1 4 4 H 1.48502 * 109.47231 * 270.00223 * 3 2 1 5 5 H 1.48507 * 109.46754 * 29.99765 * 3 2 1 6 6 H 1.48499 * 109.47476 * 150.00044 * 3 2 1 7 7 C 1.37878 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99880 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00230 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47094 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99993 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47529 * 180.02562 * 11 10 9 13 13 C 1.38232 * 119.59260 * 94.99287 * 12 11 10 14 14 C 1.38596 * 119.18886 * 180.02562 * 13 12 11 15 15 C 1.38879 * 118.39652 * 0.25621 * 14 13 12 16 16 F 1.35106 * 120.44068 * 179.74732 * 15 14 13 17 17 C 1.38422 * 119.11596 * 359.51901 * 15 14 13 18 18 N 1.31848 * 119.58665 * 275.02118 * 12 11 10 19 19 H 0.97002 * 119.99702 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47646 * 59.99359 * 9 7 2 21 21 H 1.08998 * 109.47058 * 299.99541 * 9 7 2 22 22 H 1.00898 * 110.99761 * 303.94776 * 10 9 7 23 23 H 1.09002 * 109.47585 * 59.99410 * 11 10 9 24 24 H 1.09004 * 109.46730 * 299.99486 * 11 10 9 25 25 H 1.08002 * 120.40687 * 0.02599 * 13 12 11 26 26 H 1.08002 * 120.79700 * 179.97438 * 14 13 12 27 27 H 1.07999 * 119.63454 * 180.20814 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5053 -4.9070 0.0012 12 6 2.5147 -6.0260 0.0031 13 6 2.8924 -6.6025 1.2014 14 6 3.8218 -7.6307 1.1935 15 6 4.3439 -8.0397 -0.0267 16 9 5.2562 -9.0347 -0.0819 17 6 3.9136 -7.4175 -1.1860 18 7 3.0270 -6.4426 -1.1381 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6241 -2.5567 0.8903 22 1 2.8410 -3.5490 -0.7792 23 1 0.8813 -4.9816 -0.8894 24 1 0.8795 -4.9813 0.8906 25 1 2.4686 -6.2560 2.1323 26 1 4.1358 -8.0993 2.1144 27 1 4.3116 -7.7312 -2.1397 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591754129.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:37 Heat of formation + Delta-G solvation = -15.330273 kcal Electronic energy + Delta-G solvation = -12761.839020 eV Core-core repulsion = 10240.879403 eV Total energy + Delta-G solvation = -2520.959617 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.02449 -40.08281 -35.40922 -32.69965 -32.47962 -30.86513 -27.22965 -24.72697 -23.84603 -21.93297 -21.28150 -17.68219 -17.26665 -16.75012 -15.86081 -15.77037 -14.70064 -14.52126 -14.08021 -13.94396 -13.72441 -13.00807 -12.73604 -12.53879 -11.86963 -11.44857 -11.21276 -10.74994 -10.68935 -10.01492 -9.94787 -9.56780 -9.22427 -8.82164 -8.49769 -7.38447 -6.04989 -4.06952 0.91138 1.09462 3.31764 3.37622 3.42280 3.61498 3.98548 4.34601 4.43396 4.63357 4.71395 4.89005 5.31193 5.42381 5.50909 5.66794 5.78211 5.85089 6.11669 6.19355 6.62079 7.17033 7.37835 7.74343 7.89403 8.07943 8.31680 8.53860 9.01637 9.57913 11.06137 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.066116 B = 0.005376 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.397613 B = 5207.525359 C = 5335.253818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.683 5.683 11 C 0.104 3.896 12 C 0.138 3.862 13 C -0.124 4.124 14 C -0.110 4.110 15 C 0.032 3.968 16 F -0.136 7.136 17 C 0.076 3.924 18 N -0.455 5.455 19 H 0.262 0.738 20 H -0.010 1.010 21 H 0.030 0.970 22 H 0.334 0.666 23 H 0.043 0.957 24 H 0.084 0.916 25 H 0.148 0.852 26 H 0.145 0.855 27 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.725 -14.722 1.108 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.314 5.314 11 C -0.026 4.026 12 C 0.000 4.000 13 C -0.144 4.144 14 C -0.137 4.137 15 C 0.010 3.990 16 F -0.115 7.115 17 C -0.083 4.083 18 N -0.164 5.164 19 H 0.071 0.929 20 H 0.008 0.992 21 H 0.048 0.952 22 H 0.151 0.849 23 H 0.061 0.939 24 H 0.102 0.898 25 H 0.165 0.835 26 H 0.163 0.837 27 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.391 -14.206 1.027 15.229 hybrid contribution 0.571 0.256 -0.110 0.636 sum 5.962 -13.950 0.917 15.198 Atomic orbital electron populations 1.69961 1.06074 1.26856 1.50818 1.24983 0.94894 0.99381 0.95281 0.86466 0.79773 0.82910 0.78072 1.20686 1.21217 1.19769 1.21161 0.93551 0.90130 1.50493 0.91939 1.19600 0.90556 0.87058 0.96059 1.60807 1.21049 1.00199 1.49363 1.20832 0.92436 0.87738 1.01613 1.21596 0.95385 0.95186 0.87832 1.21965 0.97072 0.95202 1.00212 1.21652 0.97078 0.97659 0.97303 1.18810 0.93193 0.90888 0.96076 1.91496 1.64206 1.58568 1.97239 1.22864 0.94984 0.93041 0.97411 1.67601 1.08274 1.10729 1.29761 0.92864 0.99217 0.95166 0.84897 0.93917 0.89813 0.83465 0.83749 0.81906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.29 55.43 0.74 -25.96 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 15 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 15 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.51 -14.59 9.32 -34.44 -0.32 -14.92 15 8 H 0.06 1.75 7.81 -52.48 -0.41 1.34 15 9 C 0.19 5.03 5.44 -4.98 -0.03 5.00 15 10 N -0.68 -14.69 6.48 -116.34 -0.75 -15.44 15 11 C 0.10 1.83 5.99 -4.98 -0.03 1.80 15 12 C 0.14 2.14 6.29 -82.59 -0.52 1.63 15 13 C -0.12 -1.60 9.72 -39.45 -0.38 -1.99 15 14 C -0.11 -1.27 10.16 -39.21 -0.40 -1.67 15 15 C 0.03 0.39 7.35 -39.28 -0.29 0.10 15 16 F -0.14 -1.63 17.28 2.25 0.04 -1.59 15 17 C 0.08 0.98 11.17 -17.47 -0.20 0.79 15 18 N -0.45 -7.10 10.27 -9.42 -0.10 -7.20 15 19 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 20 H -0.01 -0.27 8.14 -51.93 -0.42 -0.70 15 21 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.33 7.21 8.71 -39.29 -0.34 6.87 15 23 H 0.04 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.08 1.36 8.04 -51.93 -0.42 0.95 15 25 H 0.15 1.64 8.06 -52.49 -0.42 1.22 15 26 H 0.14 1.25 8.06 -52.49 -0.42 0.83 15 27 H 0.16 1.67 8.06 -52.49 -0.42 1.25 15 LS Contribution 250.56 15.07 3.78 3.78 Total: -1.00 -30.31 250.56 -6.42 -36.74 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -2.84 Total: 0.75 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -2.26 Total: -7.74 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.11 Total: -48.60 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.31 -6.42 -36.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591754129.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.407 kcal (2) G-P(sol) polarization free energy of solvation -30.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds