Wall clock time and date at job start Sun Mar 29 2020 21:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00392 * 2 1 4 4 H 1.48502 * 109.47231 * 270.00223 * 3 2 1 5 5 H 1.48507 * 109.46754 * 29.99765 * 3 2 1 6 6 H 1.48499 * 109.47476 * 150.00044 * 3 2 1 7 7 C 1.37878 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99880 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00230 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47094 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99993 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47529 * 180.02562 * 11 10 9 13 13 C 1.38232 * 119.59260 * 94.99287 * 12 11 10 14 14 C 1.38596 * 119.18886 * 180.02562 * 13 12 11 15 15 C 1.38879 * 118.39652 * 0.25621 * 14 13 12 16 16 F 1.35106 * 120.44068 * 179.74732 * 15 14 13 17 17 C 1.38422 * 119.11596 * 359.51901 * 15 14 13 18 18 N 1.31848 * 119.58665 * 275.02118 * 12 11 10 19 19 H 0.97002 * 119.99702 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47646 * 59.99359 * 9 7 2 21 21 H 1.08998 * 109.47058 * 299.99541 * 9 7 2 22 22 H 1.00898 * 110.99761 * 303.94776 * 10 9 7 23 23 H 1.09002 * 109.47585 * 59.99410 * 11 10 9 24 24 H 1.09004 * 109.46730 * 299.99486 * 11 10 9 25 25 H 1.08002 * 120.40687 * 0.02599 * 13 12 11 26 26 H 1.08002 * 120.79700 * 179.97438 * 14 13 12 27 27 H 1.07999 * 119.63454 * 180.20814 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5053 -4.9070 0.0012 12 6 2.5147 -6.0260 0.0031 13 6 2.8924 -6.6025 1.2014 14 6 3.8218 -7.6307 1.1935 15 6 4.3439 -8.0397 -0.0267 16 9 5.2562 -9.0347 -0.0819 17 6 3.9136 -7.4175 -1.1860 18 7 3.0270 -6.4426 -1.1381 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6241 -2.5567 0.8903 22 1 2.8410 -3.5490 -0.7792 23 1 0.8813 -4.9816 -0.8894 24 1 0.8795 -4.9813 0.8906 25 1 2.4686 -6.2560 2.1323 26 1 4.1358 -8.0993 2.1144 27 1 4.3116 -7.7312 -2.1397 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591754129.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:37 Heat of formation + Delta-G solvation = -36.425764 kcal Electronic energy + Delta-G solvation = -12762.753789 eV Core-core repulsion = 10240.879403 eV Total energy + Delta-G solvation = -2521.874386 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.98444 -41.15331 -37.12753 -34.68670 -33.49720 -32.27301 -29.01294 -26.32750 -24.87665 -23.62336 -22.77866 -18.77703 -18.59427 -18.28878 -17.22167 -16.83488 -16.57403 -16.09354 -15.37984 -15.17971 -14.88678 -14.43447 -14.11895 -13.96125 -13.46036 -13.16564 -12.90877 -12.64168 -12.48965 -12.02563 -11.34669 -10.94186 -10.67695 -10.59891 -9.90495 -9.18916 -8.22564 -6.33480 -0.13839 0.12392 1.42345 1.43630 1.55528 2.39689 2.54936 2.98608 3.11067 3.25922 3.62606 3.79260 3.82507 3.89577 4.36942 4.51403 4.70111 4.77964 4.87868 5.02034 5.09324 5.25989 5.58757 5.62419 5.99641 6.36634 6.62016 6.83037 6.86019 7.37034 8.88972 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.066116 B = 0.005376 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.397613 B = 5207.525359 C = 5335.253818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.207 3.793 10 N -0.679 5.679 11 C 0.107 3.893 12 C 0.115 3.885 13 C -0.122 4.122 14 C -0.100 4.100 15 C 0.037 3.963 16 F -0.132 7.132 17 C 0.070 3.930 18 N -0.483 5.483 19 H 0.266 0.734 20 H -0.037 1.037 21 H 0.011 0.989 22 H 0.333 0.667 23 H 0.032 0.968 24 H 0.094 0.906 25 H 0.165 0.835 26 H 0.179 0.821 27 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.184 -15.256 1.784 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.080 0.920 9 C 0.080 3.920 10 N -0.309 5.309 11 C -0.023 4.023 12 C -0.022 4.022 13 C -0.142 4.142 14 C -0.126 4.126 15 C 0.015 3.985 16 F -0.110 7.110 17 C -0.089 4.089 18 N -0.192 5.192 19 H 0.075 0.925 20 H -0.019 1.019 21 H 0.029 0.971 22 H 0.149 0.851 23 H 0.050 0.950 24 H 0.112 0.888 25 H 0.183 0.817 26 H 0.196 0.804 27 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.857 -14.765 1.705 16.368 hybrid contribution 0.141 0.290 -0.331 0.462 sum 6.998 -14.475 1.374 16.136 Atomic orbital electron populations 1.70080 1.07711 1.28065 1.51375 1.25925 0.95806 1.03291 0.94535 0.85332 0.78513 0.78012 0.78431 1.19836 1.20534 1.18936 1.21515 0.93756 0.91447 1.50832 0.91957 1.19259 0.90563 0.88388 0.93793 1.60673 1.20254 1.00812 1.49189 1.20805 0.93097 0.86756 1.01601 1.21276 0.96213 0.95590 0.89136 1.22107 0.97101 0.95228 0.99787 1.21978 0.95704 0.96603 0.98342 1.18871 0.92823 0.90549 0.96246 1.91515 1.63979 1.58300 1.97235 1.23205 0.94390 0.92412 0.98897 1.67506 1.09406 1.12023 1.30256 0.92534 1.01911 0.97088 0.85055 0.95021 0.88750 0.81748 0.80402 0.79732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.10 13.29 21.45 0.28 -55.82 15 2 C 0.00 0.16 5.46 84.65 0.46 0.63 15 3 Si 0.97 44.31 29.54 68.60 2.03 46.34 15 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 15 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 7 C -0.54 -30.82 9.32 25.60 0.24 -30.58 15 8 H 0.06 3.50 7.81 -2.90 -0.02 3.47 15 9 C 0.21 11.11 5.44 85.55 0.47 11.58 15 10 N -0.68 -29.66 6.48 -521.99 -3.38 -33.05 15 11 C 0.11 3.82 5.99 85.56 0.51 4.33 15 12 C 0.12 3.50 6.29 42.55 0.27 3.76 15 13 C -0.12 -2.90 9.72 22.35 0.22 -2.68 15 14 C -0.10 -1.98 10.16 22.51 0.23 -1.76 15 15 C 0.04 0.81 7.35 22.47 0.17 0.97 15 16 F -0.13 -2.76 17.28 44.97 0.78 -1.98 15 17 C 0.07 1.70 11.17 84.73 0.95 2.64 15 18 N -0.48 -14.75 10.27 -183.71 -1.89 -16.64 15 19 H 0.27 14.97 8.31 -92.71 -0.77 14.20 15 20 H -0.04 -2.13 8.14 -2.39 -0.02 -2.15 15 21 H 0.01 0.63 8.14 -2.39 -0.02 0.61 15 22 H 0.33 14.62 8.71 -89.70 -0.78 13.84 15 23 H 0.03 1.19 8.14 -2.39 -0.02 1.17 15 24 H 0.09 3.09 8.04 -2.38 -0.02 3.08 15 25 H 0.16 3.26 8.06 -2.91 -0.02 3.24 15 26 H 0.18 2.30 8.06 -2.91 -0.02 2.28 15 27 H 0.19 3.44 8.06 -2.91 -0.02 3.42 15 Total: -1.00 -64.75 250.56 1.72 -63.03 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.40 Total: 9.23 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 3.50 Total: -11.11 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -4.98 Total: -105.50 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -64.75 1.72 -63.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591754129.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.604 kcal (2) G-P(sol) polarization free energy of solvation -64.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds