Wall clock time and date at job start Sun Mar 29 2020 21:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40496 * 127.07564 * 2 1 4 4 H 0.96998 * 126.51965 * 0.02562 * 3 2 1 5 5 C 1.35970 * 106.96921 * 179.97438 * 3 2 1 6 6 N 1.30302 * 109.61440 * 359.72155 * 5 3 2 7 7 C 1.35727 * 110.03367 * 0.45470 * 6 5 3 8 8 N 1.30754 * 126.24011 * 179.81365 * 7 6 5 9 9 C 1.46507 * 119.99563 * 359.69117 * 8 7 6 10 10 C 1.53004 * 109.46880 * 120.00302 * 9 8 7 11 11 C 1.53000 * 109.46647 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.46751 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00124 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99944 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99853 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99859 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47180 * 90.00242 * 16 14 12 18 18 H 1.48499 * 109.47280 * 209.99824 * 16 14 12 19 19 H 1.48496 * 109.47323 * 330.00142 * 16 14 12 20 20 H 1.09006 * 109.47007 * 270.02848 * 1 2 3 21 21 H 1.09001 * 109.46767 * 30.02476 * 1 2 3 22 22 H 1.08992 * 109.47527 * 150.02534 * 1 2 3 23 23 H 1.07998 * 125.19265 * 180.02562 * 5 3 2 24 24 H 1.08998 * 109.46926 * 239.99736 * 9 8 7 25 25 H 1.08990 * 109.47240 * 359.97438 * 9 8 7 26 26 H 1.08998 * 109.46879 * 299.99464 * 10 9 8 27 27 H 1.08990 * 109.47230 * 59.99936 * 10 9 8 28 28 H 1.08998 * 109.47049 * 299.99366 * 11 10 9 29 29 H 1.08998 * 109.47689 * 60.00012 * 11 10 9 30 30 H 0.97001 * 120.00097 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3120 1.1209 0.0000 4 1 2.0381 2.0514 0.0003 5 6 3.5889 0.6535 0.0006 6 7 3.5777 -0.6494 0.0069 7 6 2.2986 -1.1035 0.0006 8 7 1.9229 -2.3559 0.0009 9 6 2.9279 -3.4220 0.0015 10 6 2.7523 -4.2875 1.2510 11 6 3.8013 -5.4012 1.2513 12 6 3.6288 -6.2533 2.4823 13 1 2.8493 -6.0233 3.1934 14 6 4.4663 -7.3267 2.7006 15 7 4.3154 -8.0706 3.7745 16 14 5.8142 -7.7251 1.4703 17 1 7.0549 -6.9992 1.8430 18 1 6.0749 -9.1870 1.4776 19 1 5.3844 -7.3057 0.1121 20 1 -0.3633 0.0005 1.0277 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3634 -0.8901 -0.5134 23 1 4.4768 1.2683 0.0011 24 1 2.8034 -4.0391 -0.8883 25 1 3.9248 -2.9816 0.0013 26 1 2.8767 -3.6704 2.1408 27 1 1.7553 -4.7279 1.2507 28 1 3.6765 -6.0182 0.3615 29 1 4.7985 -4.9612 1.2514 30 1 4.9043 -8.8260 3.9280 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593932487.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:40 Heat of formation + Delta-G solvation = 112.677519 kcal Electronic energy + Delta-G solvation = -13203.639461 eV Core-core repulsion = 10843.983735 eV Total energy + Delta-G solvation = -2359.655727 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.46977 -35.55831 -33.90518 -33.39491 -31.75528 -30.11355 -27.41912 -26.06779 -22.78853 -22.45256 -20.07564 -19.58679 -18.37546 -16.49834 -15.87311 -15.70951 -15.11400 -14.52171 -14.00142 -13.74123 -13.33592 -12.80334 -12.55634 -12.15281 -11.59332 -11.13706 -10.74908 -10.61233 -10.47304 -10.07743 -9.83481 -9.49537 -9.46523 -8.99306 -8.68069 -8.37917 -7.12570 -5.89031 -3.85231 1.47702 1.55722 3.43550 3.49348 3.54309 3.56485 3.76395 4.39434 4.60349 4.78192 5.00471 5.18053 5.37282 5.45522 5.49071 6.11387 6.19568 6.38423 6.57418 6.59618 6.91348 7.02776 7.19953 7.44726 7.59465 7.69871 7.97171 8.01967 8.63926 8.74201 9.17445 9.74514 11.24851 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.057010 B = 0.005709 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.027439 B = 4903.180356 C = 5128.084452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.136 3.864 2 N -0.454 5.454 3 N -0.526 5.526 4 H 0.440 0.560 5 C 0.361 3.639 6 N -0.568 5.568 7 C 0.516 3.484 8 N -0.587 5.587 9 C 0.076 3.924 10 C -0.089 4.089 11 C -0.013 4.013 12 C -0.513 4.513 13 H 0.070 0.930 14 C 0.063 3.937 15 N -0.909 5.909 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.264 1.264 20 H 0.059 0.941 21 H 0.067 0.933 22 H 0.097 0.903 23 H 0.227 0.773 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.015 0.985 29 H 0.010 0.990 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.207 22.907 -9.742 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 N -0.269 5.269 3 N -0.256 5.256 4 H 0.286 0.714 5 C 0.062 3.938 6 N -0.302 5.302 7 C 0.150 3.850 8 N -0.324 5.324 9 C -0.054 4.054 10 C -0.128 4.128 11 C -0.051 4.051 12 C -0.552 4.552 13 H 0.088 0.912 14 C -0.137 4.137 15 N -0.549 5.549 16 Si 0.708 3.292 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.189 1.189 20 H 0.077 0.923 21 H 0.086 0.914 22 H 0.115 0.885 23 H 0.243 0.757 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.033 0.967 29 H 0.029 0.971 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.559 21.473 -9.653 23.980 hybrid contribution 0.734 0.981 -0.455 1.307 sum -3.825 22.454 -10.109 24.920 Atomic orbital electron populations 1.21599 0.72890 1.03664 1.02383 1.47098 1.02598 0.96719 1.80493 1.45087 1.02629 1.02805 1.75078 0.71416 1.25632 0.86695 0.92532 0.88911 1.71766 1.20922 1.08666 1.28848 1.20725 0.81230 0.88692 0.94356 1.72379 1.34491 0.94790 1.30714 1.21859 0.93111 0.91343 0.99093 1.21398 1.00223 0.96293 0.94868 1.19563 0.94219 0.93924 0.97403 1.21201 1.16798 1.11050 1.06102 0.91163 1.25037 0.97432 0.95953 0.95261 1.69929 1.39315 1.18579 1.27043 0.86753 0.82547 0.77098 0.82783 1.20353 1.21542 1.18902 0.92288 0.91432 0.88502 0.75721 0.91948 0.93198 0.93585 0.92657 0.96651 0.97133 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 1.20 11.53 59.85 0.69 1.89 16 2 N -0.45 -5.47 4.16 -68.74 -0.29 -5.76 16 3 N -0.53 -3.94 7.39 29.73 0.22 -3.72 16 4 H 0.44 1.25 8.96 -182.30 -1.63 -0.38 16 5 C 0.36 3.11 13.06 -89.69 -1.17 1.93 16 6 N -0.57 -8.70 10.12 -14.67 -0.15 -8.85 16 7 C 0.52 8.77 8.50 -320.87 -2.73 6.05 16 8 N -0.59 -11.77 10.57 -61.93 -0.65 -12.43 16 9 C 0.08 1.64 6.39 -4.04 -0.03 1.61 16 10 C -0.09 -2.16 5.48 -26.73 -0.15 -2.31 16 11 C -0.01 -0.35 4.04 -27.88 -0.11 -0.47 16 12 C -0.51 -16.00 9.66 -34.44 -0.33 -16.33 16 13 H 0.07 2.34 7.99 -52.49 -0.42 1.93 16 14 C 0.06 1.97 5.47 -17.82 -0.10 1.88 16 15 N -0.91 -29.64 13.96 55.43 0.77 -28.87 16 16 Si 0.88 23.22 27.47 -169.99 -4.67 18.55 16 17 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 19 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 20 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 21 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 22 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 23 H 0.23 0.58 8.06 -52.49 -0.42 0.16 16 24 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.05 1.08 7.02 -51.93 -0.36 0.72 16 26 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.05 1.36 8.14 -51.93 -0.42 0.93 16 28 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 29 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 30 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 LS Contribution 262.50 15.07 3.96 3.96 Total: -1.00 -40.00 262.50 -10.04 -50.04 By element: Atomic # 1 Polarization: -1.85 SS G_CDS: -5.31 Total: -7.16 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -3.92 Total: -5.75 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.10 Total: -59.63 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -4.67 Total: 18.55 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -40.00 -10.04 -50.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593932487.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.716 kcal (2) G-P(sol) polarization free energy of solvation -39.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds