Wall clock time and date at job start Sun Mar 29 2020 21:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47016 * 2 1 4 4 N 1.46491 * 109.47093 * 119.99823 * 2 1 3 5 5 C 1.35317 * 125.87029 * 275.29461 * 4 2 1 6 6 C 1.35352 * 106.17693 * 180.18381 * 5 4 2 7 7 C 1.50700 * 126.75361 * 179.84844 * 6 5 4 8 8 N 1.46498 * 109.46769 * 94.71485 * 7 6 5 9 9 C 1.36943 * 119.99752 * 179.72432 * 8 7 6 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47213 * 60.00246 * 13 11 9 15 15 H 1.48502 * 109.47317 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47081 * 299.99875 * 13 11 9 17 17 N 1.33772 * 106.49634 * 359.59642 * 6 5 4 18 18 N 1.28636 * 108.88627 * 0.25926 * 17 6 5 19 19 H 1.08999 * 109.47458 * 300.00353 * 1 2 3 20 20 H 1.09007 * 109.47365 * 60.00278 * 1 2 3 21 21 H 1.09004 * 109.47616 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46868 * 240.00089 * 2 1 3 23 23 H 1.09002 * 109.47230 * 299.99843 * 3 2 1 24 24 H 1.09001 * 109.47561 * 60.00011 * 3 2 1 25 25 H 1.09002 * 109.47121 * 180.02562 * 3 2 1 26 26 H 1.08002 * 126.91295 * 0.03783 * 5 4 2 27 27 H 1.09004 * 109.47210 * 334.71843 * 7 6 5 28 28 H 1.08994 * 109.47121 * 214.71813 * 7 6 5 29 29 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 30 30 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 2.1872 -0.1356 2.4186 6 6 2.6555 -1.1215 3.2189 7 6 3.0063 -1.0069 4.6800 8 7 1.8585 -1.4194 5.4915 9 6 1.9452 -1.4038 6.8581 10 1 2.8582 -1.0831 7.3376 11 6 0.8596 -1.8001 7.6270 12 7 -0.2530 -2.1914 7.0425 13 14 0.9776 -1.7782 9.4911 14 1 1.2585 -0.3951 9.9531 15 1 -0.3064 -2.2441 10.0740 16 1 2.0746 -2.6785 9.9283 17 7 2.7406 -2.2193 2.4591 18 7 2.3559 -1.9307 1.2661 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.6766 1.9563 -0.8900 24 1 1.6766 1.9564 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.9903 0.8887 2.6988 27 1 3.2626 0.0269 4.9122 28 1 3.8576 -1.6506 4.9009 29 1 1.0385 -1.7077 5.0609 30 1 -1.0117 -2.4680 7.5798 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594645894.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:09 Heat of formation + Delta-G solvation = 105.349983 kcal Electronic energy + Delta-G solvation = -13515.299275 eV Core-core repulsion = 11155.325802 eV Total energy + Delta-G solvation = -2359.973472 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.88448 -36.54197 -34.69196 -31.99404 -31.01355 -29.85761 -27.67330 -25.79837 -23.68624 -22.75102 -20.82402 -20.32305 -17.41868 -16.74628 -16.04332 -14.90911 -14.52130 -14.50468 -13.73073 -13.45746 -13.04958 -12.98697 -12.62195 -12.49293 -11.89809 -11.77065 -11.46157 -11.14639 -10.84646 -10.75924 -10.34682 -10.08992 -9.80462 -9.63531 -8.83664 -8.74714 -6.87359 -5.69984 -2.99463 1.94834 2.53405 3.00523 3.48978 3.53042 3.54514 4.21629 4.51278 4.65780 4.68888 4.80163 5.14698 5.26182 5.30550 5.35880 5.46785 5.53305 5.65699 5.71591 5.85647 6.00982 6.23054 6.49009 6.73124 6.83644 6.92761 7.74184 8.47489 8.95110 9.58966 10.15472 10.51594 11.52864 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.053587 B = 0.006422 C = 0.006253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.393256 B = 4359.149769 C = 4476.939235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 C -0.165 4.165 4 N -0.294 5.294 5 C -0.043 4.043 6 C -0.008 4.008 7 C 0.233 3.767 8 N -0.726 5.726 9 C -0.240 4.240 10 H 0.073 0.927 11 C -0.014 4.014 12 N -0.933 5.933 13 Si 0.910 3.090 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.285 1.285 17 N -0.257 5.257 18 N -0.100 5.100 19 H 0.069 0.931 20 H 0.081 0.919 21 H 0.069 0.931 22 H 0.110 0.890 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.185 0.815 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.385 0.615 30 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.810 9.055 -15.014 17.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.038 3.962 3 C -0.223 4.223 4 N -0.089 5.089 5 C -0.194 4.194 6 C -0.146 4.146 7 C 0.104 3.896 8 N -0.371 5.371 9 C -0.371 4.371 10 H 0.091 0.909 11 C -0.210 4.210 12 N -0.582 5.582 13 Si 0.741 3.259 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.212 1.212 17 N -0.124 5.124 18 N -0.078 5.078 19 H 0.088 0.912 20 H 0.100 0.900 21 H 0.088 0.912 22 H 0.128 0.872 23 H 0.103 0.897 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.202 0.798 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.219 0.781 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.007 7.746 -15.647 17.716 hybrid contribution -0.531 0.952 1.334 1.723 sum 2.476 8.698 -14.313 16.931 Atomic orbital electron populations 1.22233 0.92608 1.03943 1.03663 1.21585 0.95825 0.93538 0.85258 1.22201 1.02433 0.93538 1.04101 1.47496 1.43233 1.08475 1.09704 1.23280 1.08546 1.02323 0.85209 1.22457 1.03947 0.89261 0.98938 1.18931 0.92105 0.97964 0.80598 1.42314 1.12089 1.79888 1.02775 1.19201 0.98412 1.37255 0.82198 0.90942 1.24760 0.96156 1.02031 0.98019 1.69679 1.03531 1.50660 1.34292 0.86226 0.76633 0.77653 0.85409 1.21256 1.21748 1.21189 1.75076 1.16237 1.24646 0.96475 1.78230 1.16835 0.96102 1.16655 0.91218 0.90039 0.91220 0.87239 0.89731 0.90950 0.91301 0.79764 0.94559 0.94405 0.78116 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 9.52 37.16 0.35 -1.12 16 2 C 0.14 1.35 3.85 -67.94 -0.26 1.09 16 3 C -0.16 -1.14 8.84 37.16 0.33 -0.81 16 4 N -0.29 -4.38 3.25 -54.77 -0.18 -4.56 16 5 C -0.04 -0.68 10.62 -17.04 -0.18 -0.86 16 6 C -0.01 -0.16 6.61 -82.78 -0.55 -0.71 16 7 C 0.23 5.09 6.82 -5.19 -0.04 5.05 16 8 N -0.73 -19.54 5.59 -61.09 -0.34 -19.88 16 9 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 10 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 11 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -29.21 13.06 55.49 0.72 -28.49 16 13 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 N -0.26 -5.52 12.41 33.29 0.41 -5.11 16 18 N -0.10 -1.87 13.17 60.35 0.79 -1.07 16 19 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 20 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.07 0.51 7.18 -51.93 -0.37 0.13 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.19 2.33 7.31 -52.49 -0.38 1.95 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.39 11.18 7.66 -40.82 -0.31 10.87 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 263.52 15.07 3.97 3.97 Total: -1.00 -34.42 263.52 -4.23 -38.64 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.00 Total: 3.64 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -0.59 Total: -4.91 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: 1.41 Total: -59.11 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -34.42 -4.23 -38.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594645894.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.992 kcal (2) G-P(sol) polarization free energy of solvation -34.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds