Wall clock time and date at job start Sun Mar 29 2020 21:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47016 * 2 1 4 4 N 1.46491 * 109.47093 * 119.99823 * 2 1 3 5 5 C 1.35317 * 125.87029 * 275.29461 * 4 2 1 6 6 C 1.35352 * 106.17693 * 180.18381 * 5 4 2 7 7 C 1.50700 * 126.75361 * 179.84844 * 6 5 4 8 8 N 1.46498 * 109.46769 * 94.71485 * 7 6 5 9 9 C 1.36943 * 119.99752 * 179.72432 * 8 7 6 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47213 * 60.00246 * 13 11 9 15 15 H 1.48502 * 109.47317 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47081 * 299.99875 * 13 11 9 17 17 N 1.33772 * 106.49634 * 359.59642 * 6 5 4 18 18 N 1.28636 * 108.88627 * 0.25926 * 17 6 5 19 19 H 1.08999 * 109.47458 * 300.00353 * 1 2 3 20 20 H 1.09007 * 109.47365 * 60.00278 * 1 2 3 21 21 H 1.09004 * 109.47616 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46868 * 240.00089 * 2 1 3 23 23 H 1.09002 * 109.47230 * 299.99843 * 3 2 1 24 24 H 1.09001 * 109.47561 * 60.00011 * 3 2 1 25 25 H 1.09002 * 109.47121 * 180.02562 * 3 2 1 26 26 H 1.08002 * 126.91295 * 0.03783 * 5 4 2 27 27 H 1.09004 * 109.47210 * 334.71843 * 7 6 5 28 28 H 1.08994 * 109.47121 * 214.71813 * 7 6 5 29 29 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 30 30 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 2.1872 -0.1356 2.4186 6 6 2.6555 -1.1215 3.2189 7 6 3.0063 -1.0069 4.6800 8 7 1.8585 -1.4194 5.4915 9 6 1.9452 -1.4038 6.8581 10 1 2.8582 -1.0831 7.3376 11 6 0.8596 -1.8001 7.6270 12 7 -0.2530 -2.1914 7.0425 13 14 0.9776 -1.7782 9.4911 14 1 1.2585 -0.3951 9.9531 15 1 -0.3064 -2.2441 10.0740 16 1 2.0746 -2.6785 9.9283 17 7 2.7406 -2.2193 2.4591 18 7 2.3559 -1.9307 1.2661 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.6766 1.9563 -0.8900 24 1 1.6766 1.9564 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.9903 0.8887 2.6988 27 1 3.2626 0.0269 4.9122 28 1 3.8576 -1.6506 4.9009 29 1 1.0385 -1.7077 5.0609 30 1 -1.0117 -2.4680 7.5798 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594645894.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:08 Heat of formation + Delta-G solvation = 80.016560 kcal Electronic energy + Delta-G solvation = -13516.397814 eV Core-core repulsion = 11155.325802 eV Total energy + Delta-G solvation = -2361.072012 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.22958 -37.58515 -36.55142 -33.82236 -32.24207 -31.61562 -28.35112 -27.58971 -24.91231 -24.65671 -22.26564 -21.44903 -19.35130 -18.04352 -17.33875 -16.58572 -15.95287 -15.57971 -15.44539 -15.07691 -14.38202 -14.17738 -13.83901 -13.30850 -13.16767 -13.04456 -12.70754 -12.56688 -12.48074 -12.15924 -12.12059 -11.87141 -11.74444 -10.98746 -10.93881 -10.19368 -9.02281 -7.92896 -5.23816 0.65925 1.44789 1.49906 1.52736 1.54828 1.60994 2.60353 3.34548 3.40401 3.60444 3.81197 3.97925 4.02959 4.19748 4.24151 4.44104 4.62473 4.72264 4.77358 4.79183 4.89117 5.10531 5.15740 5.17265 5.28532 5.50694 5.77018 6.26535 7.33067 7.54640 8.04223 8.30767 9.31094 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.053587 B = 0.006422 C = 0.006253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.393256 B = 4359.149769 C = 4476.939235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.126 3.874 3 C -0.159 4.159 4 N -0.278 5.278 5 C -0.020 4.020 6 C -0.041 4.041 7 C 0.236 3.764 8 N -0.740 5.740 9 C -0.246 4.246 10 H 0.085 0.915 11 C -0.078 4.078 12 N -0.975 5.975 13 Si 0.982 3.018 14 H -0.271 1.271 15 H -0.297 1.297 16 H -0.279 1.279 17 N -0.304 5.304 18 N -0.118 5.118 19 H 0.061 0.939 20 H 0.119 0.881 21 H 0.046 0.954 22 H 0.123 0.877 23 H 0.116 0.884 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.222 0.778 27 H 0.063 0.937 28 H 0.028 0.972 29 H 0.370 0.630 30 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.108 11.143 -15.670 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 C -0.217 4.217 4 N -0.073 5.073 5 C -0.172 4.172 6 C -0.180 4.180 7 C 0.108 3.892 8 N -0.382 5.382 9 C -0.378 4.378 10 H 0.103 0.897 11 C -0.270 4.270 12 N -0.625 5.625 13 Si 0.810 3.190 14 H -0.196 1.196 15 H -0.223 1.223 16 H -0.205 1.205 17 N -0.170 5.170 18 N -0.097 5.097 19 H 0.080 0.920 20 H 0.137 0.863 21 H 0.065 0.935 22 H 0.141 0.859 23 H 0.135 0.865 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.238 0.762 27 H 0.081 0.919 28 H 0.046 0.954 29 H 0.201 0.799 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.350 9.850 -16.346 19.376 hybrid contribution -0.609 0.366 1.377 1.550 sum 2.741 10.216 -14.969 18.329 Atomic orbital electron populations 1.22251 0.91780 1.02898 1.05140 1.22201 0.96452 0.95058 0.83600 1.22234 1.02244 0.91329 1.05863 1.48001 1.41009 1.07447 1.10868 1.23670 1.05848 1.02915 0.84751 1.22324 1.06659 0.90454 0.98527 1.18961 0.90010 0.98683 0.81507 1.42525 1.12878 1.80051 1.02776 1.19692 0.98678 1.36021 0.83369 0.89709 1.25678 0.95911 1.02423 1.02999 1.69863 1.04315 1.52423 1.35925 0.85092 0.76269 0.78255 0.79395 1.19632 1.22341 1.20471 1.74999 1.18081 1.26248 0.97685 1.78111 1.17745 0.98021 1.15789 0.91999 0.86285 0.93510 0.85949 0.86509 0.90666 0.91589 0.76152 0.91911 0.95422 0.79909 0.94046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.52 71.98 0.69 -1.81 16 2 C 0.13 2.10 3.85 44.99 0.17 2.28 16 3 C -0.16 -1.59 8.84 71.98 0.64 -0.95 16 4 N -0.28 -7.89 3.25 -327.19 -1.06 -8.96 16 5 C -0.02 -0.59 10.62 83.49 0.89 0.29 16 6 C -0.04 -1.62 6.61 41.60 0.28 -1.35 16 7 C 0.24 10.29 6.82 85.63 0.58 10.87 16 8 N -0.74 -40.21 5.59 -347.18 -1.94 -42.15 16 9 C -0.25 -14.16 9.99 84.03 0.84 -13.32 16 10 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 11 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 12 N -0.97 -62.06 13.06 21.65 0.28 -61.78 16 13 Si 0.98 46.90 29.55 68.60 2.03 48.93 16 14 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 15 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 N -0.30 -13.30 12.41 -48.60 -0.60 -13.90 16 18 N -0.12 -4.43 13.17 37.02 0.49 -3.94 16 19 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 20 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 21 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.07 0.74 7.18 -2.39 -0.02 0.73 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.22 4.85 7.31 -2.91 -0.02 4.83 16 27 H 0.06 2.40 8.14 -2.38 -0.02 2.39 16 28 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.37 22.01 7.66 -92.71 -0.71 21.30 16 30 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -75.87 263.52 4.16 -71.71 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.42 Total: 18.23 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 4.55 Total: -8.15 kcal Atomic # 7 Polarization: -127.88 SS G_CDS: -2.84 Total: -130.72 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -75.87 4.16 -71.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594645894.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.729 kcal (2) G-P(sol) polarization free energy of solvation -75.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds