Wall clock time and date at job start Sun Mar 29 2020 21:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47278 * 86.42211 * 3 2 1 5 5 S 1.81406 * 109.47291 * 179.97438 * 4 3 2 6 6 C 1.81397 * 103.00166 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47174 * 181.60710 * 6 5 4 8 8 C 1.50696 * 115.54860 * 305.21944 * 7 6 5 9 9 H 1.08002 * 120.00225 * 278.21059 * 8 7 6 10 10 C 1.37878 * 119.99672 * 97.94116 * 8 7 6 11 11 N 1.31521 * 120.00146 * 181.34555 * 10 8 7 12 12 Si 1.86796 * 120.00156 * 1.34746 * 10 8 7 13 13 H 1.48498 * 109.47513 * 92.60368 * 12 10 8 14 14 H 1.48507 * 109.47183 * 212.60603 * 12 10 8 15 15 H 1.48503 * 109.47191 * 332.60206 * 12 10 8 16 16 C 1.52998 * 117.51546 * 90.92566 * 7 6 5 17 17 C 1.52995 * 60.00079 * 107.48178 * 16 7 6 18 18 H 1.09003 * 109.47748 * 326.42208 * 3 2 1 19 19 H 1.09008 * 109.47318 * 206.42430 * 3 2 1 20 20 H 1.09004 * 109.46952 * 59.99872 * 4 3 2 21 21 H 1.08995 * 109.47126 * 300.00031 * 4 3 2 22 22 H 1.09005 * 109.46660 * 61.60654 * 6 5 4 23 23 H 1.09009 * 109.47147 * 301.61103 * 6 5 4 24 24 H 0.96990 * 120.00270 * 179.97438 * 11 10 8 25 25 H 1.09007 * 117.49366 * 214.96984 * 16 7 6 26 26 H 1.08992 * 117.50077 * 359.97438 * 16 7 6 27 27 H 1.09004 * 117.49474 * 252.50759 * 17 16 7 28 28 H 1.09001 * 117.52275 * 107.48578 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.0891 -1.4397 5 16 4.9321 -0.0876 -1.4397 6 6 5.3403 -0.1986 -3.2037 7 6 6.8600 -0.2485 -3.3734 8 6 7.6232 0.8807 -2.7304 9 1 7.7110 1.8305 -3.2370 10 6 8.2046 0.7030 -1.4929 11 7 8.8482 1.6967 -0.9199 12 14 8.0785 -0.9490 -0.6302 13 1 9.2643 -1.7762 -0.9690 14 1 8.0258 -0.7375 0.8388 15 1 6.8451 -1.6465 -1.0744 16 6 7.5237 -1.6268 -3.3966 17 6 7.4060 -0.8126 -4.6866 18 1 2.9718 -0.8553 0.5684 19 1 2.9710 0.9212 0.4574 20 1 2.7543 0.7669 -2.0080 21 1 2.7552 -1.0096 -1.8969 22 1 4.9450 0.6742 -3.7236 23 1 4.8979 -1.1024 -3.6228 24 1 9.2569 1.5718 -0.0493 25 1 8.5125 -1.7168 -2.9467 26 1 6.8778 -2.4983 -3.2906 27 1 6.6826 -1.1485 -5.4295 28 1 8.3171 -0.3668 -5.0857 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594903400.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:33 Heat of formation + Delta-G solvation = 45.319553 kcal Electronic energy + Delta-G solvation = -11517.293372 eV Core-core repulsion = 9467.458242 eV Total energy + Delta-G solvation = -2049.835129 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.07824 -36.88784 -32.92869 -32.05163 -28.12487 -25.56408 -24.44786 -21.82377 -19.09429 -17.63639 -16.45470 -15.51234 -15.44714 -14.87277 -14.08972 -13.72766 -13.44768 -13.32034 -12.79955 -12.64470 -12.36591 -11.94418 -11.66939 -11.20251 -11.09549 -10.78022 -10.35294 -10.19826 -9.85733 -9.07692 -8.96386 -8.56602 -8.41726 -6.83507 -6.07150 -4.12712 2.02102 2.72805 2.75213 3.23625 3.40697 3.49758 3.61174 4.08408 4.50046 4.88310 4.94178 4.94506 5.21230 5.42457 5.58411 5.70196 5.84161 5.86624 6.02299 6.07998 6.31590 6.40847 6.63240 6.95109 7.03994 7.48362 7.70908 8.48363 8.92140 9.54856 11.03677 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.035641 B = 0.009652 C = 0.008602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.414338 B = 2900.283887 C = 3254.229045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.218 3.782 3 C -0.009 4.009 4 C -0.122 4.122 5 S -0.196 6.196 6 C -0.039 4.039 7 C 0.014 3.986 8 C -0.492 4.492 9 H 0.078 0.922 10 C 0.092 3.908 11 N -0.895 5.895 12 Si 0.848 3.152 13 H -0.285 1.285 14 H -0.295 1.295 15 H -0.212 1.212 16 C -0.199 4.199 17 C -0.176 4.176 18 H 0.116 0.884 19 H 0.119 0.881 20 H 0.081 0.919 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.057 0.943 24 H 0.265 0.735 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.377 -5.637 -0.866 9.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.101 4.101 3 C -0.050 4.050 4 C -0.271 4.271 5 S 0.032 5.968 6 C -0.188 4.188 7 C 0.012 3.988 8 C -0.529 4.529 9 H 0.096 0.904 10 C -0.111 4.111 11 N -0.531 5.531 12 Si 0.677 3.323 13 H -0.212 1.212 14 H -0.223 1.223 15 H -0.136 1.136 16 C -0.236 4.236 17 C -0.216 4.216 18 H 0.134 0.866 19 H 0.137 0.863 20 H 0.100 0.900 21 H 0.096 0.904 22 H 0.094 0.906 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.327 -5.503 0.185 9.983 hybrid contribution -0.244 -0.853 -0.551 1.045 sum -8.571 -6.357 -0.366 10.677 Atomic orbital electron populations 1.81201 1.13061 1.09519 1.08684 1.29268 0.95215 0.92689 0.92956 1.18957 0.80933 1.06965 0.98117 1.23382 1.01055 1.04959 0.97703 1.87619 0.98319 1.97476 1.13374 1.23104 1.00914 1.02197 0.92563 1.19085 0.88731 0.93475 0.97477 1.20159 1.32290 0.97361 1.03083 0.90406 1.24875 0.93501 0.96467 0.96284 1.69870 1.35142 1.31662 1.16418 0.87221 0.80930 0.85578 0.78533 1.21230 1.22278 1.13575 1.22988 1.02311 0.95527 1.02798 1.22973 1.02687 1.05108 0.90782 0.86634 0.86276 0.89979 0.90361 0.90631 0.92409 0.92562 0.89453 0.90467 0.90994 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.59 18.54 42.15 0.78 -5.81 15 2 C 0.22 2.64 15.43 -20.76 -0.32 2.32 15 3 C -0.01 -0.09 5.71 -29.52 -0.17 -0.26 15 4 C -0.12 -1.53 5.90 37.16 0.22 -1.31 15 5 S -0.20 -3.54 17.22 -107.50 -1.85 -5.40 15 6 C -0.04 -0.72 5.87 37.16 0.22 -0.51 15 7 C 0.01 0.31 1.39 -155.67 -0.22 0.09 15 8 C -0.49 -13.06 8.91 -34.44 -0.31 -13.37 15 9 H 0.08 2.29 8.06 -52.49 -0.42 1.87 15 10 C 0.09 2.54 5.29 -17.82 -0.09 2.45 15 11 N -0.89 -26.56 13.96 55.43 0.77 -25.78 15 12 Si 0.85 20.35 22.54 -169.99 -3.83 16.52 15 13 H -0.29 -6.88 6.96 56.52 0.39 -6.49 15 14 H -0.30 -7.29 7.11 56.52 0.40 -6.88 15 15 H -0.21 -4.60 4.80 56.52 0.27 -4.33 15 16 C -0.20 -4.02 6.91 -26.73 -0.18 -4.21 15 17 C -0.18 -3.35 9.95 -26.73 -0.27 -3.62 15 18 H 0.12 1.05 8.14 -51.93 -0.42 0.63 15 19 H 0.12 1.15 8.14 -51.92 -0.42 0.72 15 20 H 0.08 1.00 8.14 -51.92 -0.42 0.58 15 21 H 0.08 0.91 8.14 -51.93 -0.42 0.48 15 22 H 0.08 1.35 8.14 -51.92 -0.42 0.92 15 23 H 0.06 0.93 8.09 -51.92 -0.42 0.51 15 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 25 H 0.09 1.91 5.74 -51.92 -0.30 1.61 15 26 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 28 H 0.09 1.75 8.14 -51.93 -0.42 1.33 15 LS Contribution 251.83 15.07 3.80 3.80 Total: -1.00 -30.06 251.83 -5.25 -35.31 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -3.80 Total: -0.22 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -1.12 Total: -18.41 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 1.55 Total: -31.59 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -3.83 Total: 16.52 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.85 Total: -5.40 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.06 -5.25 -35.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903400.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.627 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds