Wall clock time and date at job start Sun Mar 29 2020 21:58:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13600 * 1
3 3 C 1.47198 * 179.97438 * 2 1
4 4 C 1.52999 * 109.47278 * 86.42211 * 3 2 1
5 5 S 1.81406 * 109.47291 * 179.97438 * 4 3 2
6 6 C 1.81397 * 103.00166 * 179.97438 * 5 4 3
7 7 C 1.52997 * 109.47174 * 181.60710 * 6 5 4
8 8 C 1.50696 * 115.54860 * 305.21944 * 7 6 5
9 9 H 1.08002 * 120.00225 * 278.21059 * 8 7 6
10 10 C 1.37878 * 119.99672 * 97.94116 * 8 7 6
11 11 N 1.31521 * 120.00146 * 181.34555 * 10 8 7
12 12 Si 1.86796 * 120.00156 * 1.34746 * 10 8 7
13 13 H 1.48498 * 109.47513 * 92.60368 * 12 10 8
14 14 H 1.48507 * 109.47183 * 212.60603 * 12 10 8
15 15 H 1.48503 * 109.47191 * 332.60206 * 12 10 8
16 16 C 1.52998 * 117.51546 * 90.92566 * 7 6 5
17 17 C 1.52995 * 60.00079 * 107.48178 * 16 7 6
18 18 H 1.09003 * 109.47748 * 326.42208 * 3 2 1
19 19 H 1.09008 * 109.47318 * 206.42430 * 3 2 1
20 20 H 1.09004 * 109.46952 * 59.99872 * 4 3 2
21 21 H 1.08995 * 109.47126 * 300.00031 * 4 3 2
22 22 H 1.09005 * 109.46660 * 61.60654 * 6 5 4
23 23 H 1.09009 * 109.47147 * 301.61103 * 6 5 4
24 24 H 0.96990 * 120.00270 * 179.97438 * 11 10 8
25 25 H 1.09007 * 117.49366 * 214.96984 * 16 7 6
26 26 H 1.08992 * 117.50077 * 359.97438 * 16 7 6
27 27 H 1.09004 * 117.49474 * 252.50759 * 17 16 7
28 28 H 1.09001 * 117.52275 * 107.48578 * 17 16 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 6 3.1181 -0.0891 -1.4397
5 16 4.9321 -0.0876 -1.4397
6 6 5.3403 -0.1986 -3.2037
7 6 6.8600 -0.2485 -3.3734
8 6 7.6232 0.8807 -2.7304
9 1 7.7110 1.8305 -3.2370
10 6 8.2046 0.7030 -1.4929
11 7 8.8482 1.6967 -0.9199
12 14 8.0785 -0.9490 -0.6302
13 1 9.2643 -1.7762 -0.9690
14 1 8.0258 -0.7375 0.8388
15 1 6.8451 -1.6465 -1.0744
16 6 7.5237 -1.6268 -3.3966
17 6 7.4060 -0.8126 -4.6866
18 1 2.9718 -0.8553 0.5684
19 1 2.9710 0.9212 0.4574
20 1 2.7543 0.7669 -2.0080
21 1 2.7552 -1.0096 -1.8969
22 1 4.9450 0.6742 -3.7236
23 1 4.8979 -1.1024 -3.6228
24 1 9.2569 1.5718 -0.0493
25 1 8.5125 -1.7168 -2.9467
26 1 6.8778 -2.4983 -3.2906
27 1 6.6826 -1.1485 -5.4295
28 1 8.3171 -0.3668 -5.0857
RHF calculation, no. of doubly occupied orbitals= 36
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000594903400.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:58:33
Heat of formation + Delta-G solvation = 45.319553 kcal
Electronic energy + Delta-G solvation = -11517.293372 eV
Core-core repulsion = 9467.458242 eV
Total energy + Delta-G solvation = -2049.835129 eV
No. of doubly occupied orbitals = 36
Molecular weight
(most abundant/longest-lived isotopes) = 211.073 amu
Computer time = 0.13 seconds
Orbital eigenvalues (eV)
-37.07824 -36.88784 -32.92869 -32.05163 -28.12487 -25.56408 -24.44786 -21.82377
-19.09429 -17.63639 -16.45470 -15.51234 -15.44714 -14.87277 -14.08972 -13.72766
-13.44768 -13.32034 -12.79955 -12.64470 -12.36591 -11.94418 -11.66939 -11.20251
-11.09549 -10.78022 -10.35294 -10.19826 -9.85733 -9.07692 -8.96386 -8.56602
-8.41726 -6.83507 -6.07150 -4.12712 2.02102 2.72805 2.75213 3.23625
3.40697 3.49758 3.61174 4.08408 4.50046 4.88310 4.94178 4.94506
5.21230 5.42457 5.58411 5.70196 5.84161 5.86624 6.02299 6.07998
6.31590 6.40847 6.63240 6.95109 7.03994 7.48362 7.70908 8.48363
8.92140 9.54856 11.03677
Molecular weight = 211.07amu
Principal moments of inertia in cm(-1)
A = 0.035641 B = 0.009652 C = 0.008602
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 785.414338 B = 2900.283887 C = 3254.229045
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.447 5.447
2 C 0.218 3.782
3 C -0.009 4.009
4 C -0.122 4.122
5 S -0.196 6.196
6 C -0.039 4.039
7 C 0.014 3.986
8 C -0.492 4.492
9 H 0.078 0.922
10 C 0.092 3.908
11 N -0.895 5.895
12 Si 0.848 3.152
13 H -0.285 1.285
14 H -0.295 1.295
15 H -0.212 1.212
16 C -0.199 4.199
17 C -0.176 4.176
18 H 0.116 0.884
19 H 0.119 0.881
20 H 0.081 0.919
21 H 0.078 0.922
22 H 0.075 0.925
23 H 0.057 0.943
24 H 0.265 0.735
25 H 0.087 0.913
26 H 0.077 0.923
27 H 0.072 0.928
28 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.377 -5.637 -0.866 9.325
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.125 5.125
2 C -0.101 4.101
3 C -0.050 4.050
4 C -0.271 4.271
5 S 0.032 5.968
6 C -0.188 4.188
7 C 0.012 3.988
8 C -0.529 4.529
9 H 0.096 0.904
10 C -0.111 4.111
11 N -0.531 5.531
12 Si 0.677 3.323
13 H -0.212 1.212
14 H -0.223 1.223
15 H -0.136 1.136
16 C -0.236 4.236
17 C -0.216 4.216
18 H 0.134 0.866
19 H 0.137 0.863
20 H 0.100 0.900
21 H 0.096 0.904
22 H 0.094 0.906
23 H 0.076 0.924
24 H 0.074 0.926
25 H 0.105 0.895
26 H 0.095 0.905
27 H 0.090 0.910
28 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -8.327 -5.503 0.185 9.983
hybrid contribution -0.244 -0.853 -0.551 1.045
sum -8.571 -6.357 -0.366 10.677
Atomic orbital electron populations
1.81201 1.13061 1.09519 1.08684 1.29268 0.95215 0.92689 0.92956
1.18957 0.80933 1.06965 0.98117 1.23382 1.01055 1.04959 0.97703
1.87619 0.98319 1.97476 1.13374 1.23104 1.00914 1.02197 0.92563
1.19085 0.88731 0.93475 0.97477 1.20159 1.32290 0.97361 1.03083
0.90406 1.24875 0.93501 0.96467 0.96284 1.69870 1.35142 1.31662
1.16418 0.87221 0.80930 0.85578 0.78533 1.21230 1.22278 1.13575
1.22988 1.02311 0.95527 1.02798 1.22973 1.02687 1.05108 0.90782
0.86634 0.86276 0.89979 0.90361 0.90631 0.92409 0.92562 0.89453
0.90467 0.90994 0.89203
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.45 -6.59 18.54 42.15 0.78 -5.81 15
2 C 0.22 2.64 15.43 -20.76 -0.32 2.32 15
3 C -0.01 -0.09 5.71 -29.52 -0.17 -0.26 15
4 C -0.12 -1.53 5.90 37.16 0.22 -1.31 15
5 S -0.20 -3.54 17.22 -107.50 -1.85 -5.40 15
6 C -0.04 -0.72 5.87 37.16 0.22 -0.51 15
7 C 0.01 0.31 1.39 -155.67 -0.22 0.09 15
8 C -0.49 -13.06 8.91 -34.44 -0.31 -13.37 15
9 H 0.08 2.29 8.06 -52.49 -0.42 1.87 15
10 C 0.09 2.54 5.29 -17.82 -0.09 2.45 15
11 N -0.89 -26.56 13.96 55.43 0.77 -25.78 15
12 Si 0.85 20.35 22.54 -169.99 -3.83 16.52 15
13 H -0.29 -6.88 6.96 56.52 0.39 -6.49 15
14 H -0.30 -7.29 7.11 56.52 0.40 -6.88 15
15 H -0.21 -4.60 4.80 56.52 0.27 -4.33 15
16 C -0.20 -4.02 6.91 -26.73 -0.18 -4.21 15
17 C -0.18 -3.35 9.95 -26.73 -0.27 -3.62 15
18 H 0.12 1.05 8.14 -51.93 -0.42 0.63 15
19 H 0.12 1.15 8.14 -51.92 -0.42 0.72 15
20 H 0.08 1.00 8.14 -51.92 -0.42 0.58 15
21 H 0.08 0.91 8.14 -51.93 -0.42 0.48 15
22 H 0.08 1.35 8.14 -51.92 -0.42 0.92 15
23 H 0.06 0.93 8.09 -51.92 -0.42 0.51 15
24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15
25 H 0.09 1.91 5.74 -51.92 -0.30 1.61 15
26 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15
27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15
28 H 0.09 1.75 8.14 -51.93 -0.42 1.33 15
LS Contribution 251.83 15.07 3.80 3.80
Total: -1.00 -30.06 251.83 -5.25 -35.31
By element:
Atomic # 1 Polarization: 3.57 SS G_CDS: -3.80 Total: -0.22 kcal
Atomic # 6 Polarization: -17.29 SS G_CDS: -1.12 Total: -18.41 kcal
Atomic # 7 Polarization: -33.14 SS G_CDS: 1.55 Total: -31.59 kcal
Atomic # 14 Polarization: 20.35 SS G_CDS: -3.83 Total: 16.52 kcal
Atomic # 16 Polarization: -3.54 SS G_CDS: -1.85 Total: -5.40 kcal
Total LS contribution 3.80 Total: 3.80 kcal
Total: -30.06 -5.25 -35.31 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000594903400.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.627 kcal
(2) G-P(sol) polarization free energy of solvation -30.059 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.568 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.248 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.307 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.320 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.13 seconds