Wall clock time and date at job start Sun Mar 29 2020 21:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47278 * 86.42211 * 3 2 1 5 5 S 1.81406 * 109.47291 * 179.97438 * 4 3 2 6 6 C 1.81397 * 103.00166 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47174 * 181.60710 * 6 5 4 8 8 C 1.50696 * 115.54860 * 305.21944 * 7 6 5 9 9 H 1.08002 * 120.00225 * 278.21059 * 8 7 6 10 10 C 1.37878 * 119.99672 * 97.94116 * 8 7 6 11 11 N 1.31521 * 120.00146 * 181.34555 * 10 8 7 12 12 Si 1.86796 * 120.00156 * 1.34746 * 10 8 7 13 13 H 1.48498 * 109.47513 * 92.60368 * 12 10 8 14 14 H 1.48507 * 109.47183 * 212.60603 * 12 10 8 15 15 H 1.48503 * 109.47191 * 332.60206 * 12 10 8 16 16 C 1.52998 * 117.51546 * 90.92566 * 7 6 5 17 17 C 1.52995 * 60.00079 * 107.48178 * 16 7 6 18 18 H 1.09003 * 109.47748 * 326.42208 * 3 2 1 19 19 H 1.09008 * 109.47318 * 206.42430 * 3 2 1 20 20 H 1.09004 * 109.46952 * 59.99872 * 4 3 2 21 21 H 1.08995 * 109.47126 * 300.00031 * 4 3 2 22 22 H 1.09005 * 109.46660 * 61.60654 * 6 5 4 23 23 H 1.09009 * 109.47147 * 301.61103 * 6 5 4 24 24 H 0.96990 * 120.00270 * 179.97438 * 11 10 8 25 25 H 1.09007 * 117.49366 * 214.96984 * 16 7 6 26 26 H 1.08992 * 117.50077 * 359.97438 * 16 7 6 27 27 H 1.09004 * 117.49474 * 252.50759 * 17 16 7 28 28 H 1.09001 * 117.52275 * 107.48578 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.0891 -1.4397 5 16 4.9321 -0.0876 -1.4397 6 6 5.3403 -0.1986 -3.2037 7 6 6.8600 -0.2485 -3.3734 8 6 7.6232 0.8807 -2.7304 9 1 7.7110 1.8305 -3.2370 10 6 8.2046 0.7030 -1.4929 11 7 8.8482 1.6967 -0.9199 12 14 8.0785 -0.9490 -0.6302 13 1 9.2643 -1.7762 -0.9690 14 1 8.0258 -0.7375 0.8388 15 1 6.8451 -1.6465 -1.0744 16 6 7.5237 -1.6268 -3.3966 17 6 7.4060 -0.8126 -4.6866 18 1 2.9718 -0.8553 0.5684 19 1 2.9710 0.9212 0.4574 20 1 2.7543 0.7669 -2.0080 21 1 2.7552 -1.0096 -1.8969 22 1 4.9450 0.6742 -3.7236 23 1 4.8979 -1.1024 -3.6228 24 1 9.2569 1.5718 -0.0493 25 1 8.5125 -1.7168 -2.9467 26 1 6.8778 -2.4983 -3.2906 27 1 6.6826 -1.1485 -5.4295 28 1 8.3171 -0.3668 -5.0857 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594903400.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:33 Heat of formation + Delta-G solvation = 26.513119 kcal Electronic energy + Delta-G solvation = -11518.108880 eV Core-core repulsion = 9467.458242 eV Total energy + Delta-G solvation = -2050.650638 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.70478 -37.90611 -34.14442 -33.87474 -29.59634 -27.48996 -25.52774 -23.38562 -20.85550 -18.58067 -18.30881 -17.07505 -16.55712 -16.38037 -15.59705 -14.98095 -14.77496 -14.65816 -14.46829 -14.09150 -13.69947 -13.22404 -12.90775 -12.82656 -12.45090 -12.07444 -11.98228 -11.89528 -11.61812 -10.85977 -10.60561 -10.43696 -9.99361 -8.29661 -8.13948 -6.26952 0.74626 1.50372 1.54118 1.69611 1.77257 1.78636 2.03820 2.51432 3.14555 3.19310 3.31576 3.99333 4.07476 4.09408 4.32809 4.48463 4.57690 4.59062 4.82777 4.84955 4.89934 4.99771 5.11672 5.36331 5.51830 5.78146 6.35568 6.54979 6.79215 7.44655 8.95858 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.035641 B = 0.009652 C = 0.008602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.414338 B = 2900.283887 C = 3254.229045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.246 3.754 3 C -0.003 4.003 4 C -0.096 4.096 5 S -0.264 6.264 6 C -0.027 4.027 7 C -0.014 4.014 8 C -0.487 4.487 9 H 0.029 0.971 10 C 0.041 3.959 11 N -0.950 5.950 12 Si 0.902 3.098 13 H -0.290 1.290 14 H -0.309 1.309 15 H -0.171 1.171 16 C -0.195 4.195 17 C -0.159 4.159 18 H 0.136 0.864 19 H 0.129 0.871 20 H 0.087 0.913 21 H 0.097 0.903 22 H 0.075 0.925 23 H 0.093 0.907 24 H 0.262 0.738 25 H 0.066 0.934 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.245 -7.952 -1.505 12.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.072 4.072 3 C -0.044 4.044 4 C -0.245 4.245 5 S -0.037 6.037 6 C -0.175 4.175 7 C -0.016 4.016 8 C -0.525 4.525 9 H 0.047 0.953 10 C -0.157 4.157 11 N -0.590 5.590 12 Si 0.729 3.271 13 H -0.218 1.218 14 H -0.238 1.238 15 H -0.093 1.093 16 C -0.232 4.232 17 C -0.199 4.199 18 H 0.154 0.846 19 H 0.147 0.853 20 H 0.106 0.894 21 H 0.116 0.884 22 H 0.093 0.907 23 H 0.111 0.889 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.205 -7.830 -0.493 12.872 hybrid contribution 0.323 -0.030 -0.433 0.541 sum -9.882 -7.859 -0.926 12.661 Atomic orbital electron populations 1.81246 1.14485 1.11252 1.10119 1.29355 0.95096 0.91168 0.91568 1.19032 0.79571 1.08496 0.97257 1.23292 0.95747 1.06298 0.99208 1.87691 1.04176 1.97659 1.14158 1.22939 0.98188 1.03927 0.92488 1.19017 0.90396 0.92679 0.99494 1.20333 1.32138 0.97295 1.02694 0.95299 1.25628 0.93262 0.99652 0.97129 1.70032 1.37660 1.34273 1.17048 0.86432 0.82357 0.81832 0.76435 1.21786 1.23756 1.09293 1.23025 1.01572 0.95581 1.03024 1.23020 1.02724 1.03404 0.90722 0.84580 0.85324 0.89410 0.88405 0.90660 0.88873 0.92940 0.91579 0.87206 0.87016 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.49 18.54 20.01 0.37 -13.12 15 2 C 0.25 5.23 15.43 89.44 1.38 6.61 15 3 C 0.00 -0.05 5.71 28.79 0.16 0.11 15 4 C -0.10 -2.03 5.90 71.98 0.42 -1.61 15 5 S -0.26 -8.81 17.22 -56.49 -0.97 -9.78 15 6 C -0.03 -0.91 5.87 71.98 0.42 -0.49 15 7 C -0.01 -0.58 1.39 -52.93 -0.07 -0.66 15 8 C -0.49 -26.37 8.91 25.60 0.23 -26.14 15 9 H 0.03 1.79 8.06 -2.91 -0.02 1.76 15 10 C 0.04 2.32 5.29 84.65 0.45 2.77 15 11 N -0.95 -58.84 13.96 21.45 0.30 -58.54 15 12 Si 0.90 42.03 22.54 68.60 1.55 43.57 15 13 H -0.29 -13.58 6.96 99.48 0.69 -12.88 15 14 H -0.31 -14.95 7.11 99.48 0.71 -14.24 15 15 H -0.17 -6.77 4.80 99.48 0.48 -6.30 15 16 C -0.20 -7.21 6.91 30.59 0.21 -6.99 15 17 C -0.16 -5.58 9.95 30.59 0.30 -5.27 15 18 H 0.14 1.89 8.14 -2.39 -0.02 1.87 15 19 H 0.13 2.07 8.14 -2.38 -0.02 2.05 15 20 H 0.09 1.81 8.14 -2.39 -0.02 1.79 15 21 H 0.10 1.76 8.14 -2.39 -0.02 1.74 15 22 H 0.07 2.48 8.14 -2.39 -0.02 2.46 15 23 H 0.09 2.48 8.09 -2.39 -0.02 2.46 15 24 H 0.26 15.42 8.31 -92.72 -0.77 14.65 15 25 H 0.07 2.74 5.74 -2.38 -0.01 2.73 15 26 H 0.11 3.36 8.14 -2.39 -0.02 3.34 15 27 H 0.11 3.05 8.14 -2.38 -0.02 3.03 15 28 H 0.08 2.85 8.14 -2.39 -0.02 2.83 15 Total: -1.00 -67.90 251.83 5.65 -62.25 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: 0.89 Total: 7.28 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: 3.51 Total: -31.66 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: 0.67 Total: -71.66 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.55 Total: 43.57 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -0.97 Total: -9.78 kcal Total: -67.90 5.65 -62.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903400.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.764 kcal (2) G-P(sol) polarization free energy of solvation -67.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds