Wall clock time and date at job start Sun Mar 29 2020 22:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35952 * 117.00244 * 2 1 4 4 C 1.39814 * 125.77915 * 180.02562 * 3 2 1 5 5 C 1.36652 * 107.81679 * 180.02562 * 4 3 2 6 6 N 1.38477 * 126.27795 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99672 * 359.72321 * 6 5 4 8 8 O 1.21828 * 119.99754 * 0.02562 * 7 6 5 9 9 C 1.41429 * 119.99883 * 180.02562 * 7 6 5 10 10 H 1.07996 * 120.00115 * 353.74998 * 9 7 6 11 11 C 1.40160 * 120.00006 * 173.75535 * 9 7 6 12 12 N 1.30618 * 119.99849 * 6.25466 * 11 9 7 13 13 Si 1.86794 * 119.99985 * 186.25901 * 11 9 7 14 14 H 1.48509 * 109.47141 * 94.98297 * 13 11 9 15 15 H 1.48496 * 109.47426 * 214.98002 * 13 11 9 16 16 H 1.48495 * 109.47239 * 334.98454 * 13 11 9 17 17 N 1.36165 * 107.44956 * 0.26087 * 5 4 3 18 18 H 0.97003 * 126.08467 * 179.70637 * 17 5 4 19 19 N 1.31374 * 125.77785 * 0.02562 * 3 2 1 20 20 H 1.09004 * 109.46619 * 300.00011 * 1 2 3 21 21 H 1.08996 * 109.46765 * 59.99983 * 1 2 3 22 22 H 1.08992 * 109.47069 * 180.02562 * 1 2 3 23 23 H 1.07991 * 126.09102 * 0.03564 * 4 3 2 24 24 H 0.97001 * 120.00219 * 180.02562 * 6 5 4 25 25 H 0.97001 * 119.99828 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 3.4281 1.4247 -0.0005 5 6 3.6428 2.7742 0.0003 6 7 4.8740 3.4080 0.0006 7 6 6.0073 2.6786 0.0058 8 8 5.9485 1.4617 0.0097 9 6 7.2648 3.3258 0.0067 10 1 7.3197 4.3992 -0.0986 11 6 8.4398 2.5742 0.1441 12 7 8.3835 1.2692 0.1485 13 14 10.0862 3.4386 0.3210 14 1 10.4235 3.5711 1.7612 15 1 11.1384 2.6444 -0.3626 16 1 10.0058 4.7875 -0.2946 17 7 2.4241 3.3815 0.0071 18 1 2.2624 4.3380 0.0133 19 7 1.4454 2.3796 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 4.1899 0.6593 -0.0015 24 1 4.9208 4.3769 0.0015 25 1 9.1966 0.7490 0.2439 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600256668.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:46 Heat of formation + Delta-G solvation = 6.568682 kcal Electronic energy + Delta-G solvation = -13474.276697 eV Core-core repulsion = 10876.467989 eV Total energy + Delta-G solvation = -2597.808708 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.58679 -38.11690 -37.17321 -33.51784 -32.50575 -30.07495 -28.61674 -26.98771 -26.32272 -21.72259 -20.90715 -19.42111 -18.22615 -16.77715 -16.21236 -15.64406 -15.54966 -14.79129 -14.02217 -13.98225 -13.52385 -12.61392 -12.57075 -12.41151 -11.66437 -11.46151 -11.25369 -10.99050 -10.75071 -10.43123 -9.91862 -9.62008 -8.98457 -8.02872 -7.79370 -7.11175 -6.47852 -5.01252 2.58100 3.01543 3.03820 3.10582 3.13749 3.63829 3.65871 3.96908 4.36568 4.73853 5.35314 5.49257 5.56624 5.61179 5.77401 6.33777 6.47650 7.11929 7.20785 7.33099 7.71277 7.86971 8.01167 8.14038 8.41727 8.70432 9.12947 10.27218 10.45941 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.075607 B = 0.007110 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.244822 B = 3937.398311 C = 4289.075158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.292 6.292 3 C 0.273 3.727 4 C -0.306 4.306 5 C 0.371 3.629 6 N -0.669 5.669 7 C 0.545 3.455 8 O -0.548 6.548 9 C -0.534 4.534 10 H 0.073 0.927 11 C 0.088 3.912 12 N -0.742 5.742 13 Si 0.917 3.083 14 H -0.270 1.270 15 H -0.276 1.276 16 H -0.262 1.262 17 N -0.504 5.504 18 H 0.431 0.569 19 N -0.375 5.375 20 H 0.051 0.949 21 H 0.052 0.948 22 H 0.093 0.907 23 H 0.180 0.820 24 H 0.393 0.607 25 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.037 3.780 0.116 7.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.196 6.196 3 C 0.070 3.930 4 C -0.339 4.339 5 C 0.147 3.853 6 N -0.316 5.316 7 C 0.354 3.646 8 O -0.429 6.429 9 C -0.570 4.570 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.369 5.369 13 Si 0.741 3.259 14 H -0.195 1.195 15 H -0.201 1.201 16 H -0.186 1.186 17 N -0.225 5.225 18 H 0.274 0.726 19 N -0.217 5.217 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.111 0.889 23 H 0.197 0.803 24 H 0.226 0.774 25 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.854 2.885 0.119 8.368 hybrid contribution 1.149 1.278 0.100 1.722 sum -6.704 4.163 0.219 7.895 Atomic orbital electron populations 1.22847 0.78879 1.02679 1.01621 1.86290 1.21099 1.22473 1.89720 1.20417 0.91823 0.84577 0.96183 1.21020 0.92947 0.94853 1.25034 1.18440 0.80892 0.90810 0.95165 1.43926 1.02221 1.09873 1.75622 1.17027 0.81843 0.87107 0.78579 1.90618 1.84710 1.13358 1.54168 1.19876 0.89504 0.95094 1.52504 0.90872 1.25763 1.00797 0.94559 0.92528 1.69994 1.29705 1.05962 1.31196 0.86199 0.80598 0.80041 0.79105 1.19490 1.20122 1.18645 1.45766 1.01575 1.07603 1.67531 0.72568 1.77254 1.11525 0.94976 1.37993 0.92981 0.92973 0.88906 0.80269 0.77362 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.69 101.05 1.08 1.57 15 2 O -0.29 -5.59 10.58 -19.59 -0.21 -5.80 15 3 C 0.27 5.83 7.87 -17.16 -0.13 5.70 15 4 C -0.31 -7.32 9.66 -39.57 -0.38 -7.70 15 5 C 0.37 8.01 8.10 -153.11 -1.24 6.77 15 6 N -0.67 -14.50 5.37 -14.02 -0.08 -14.57 15 7 C 0.55 14.65 7.51 -15.04 -0.11 14.54 15 8 O -0.55 -16.72 12.00 5.07 0.06 -16.66 15 9 C -0.53 -13.89 9.29 -37.65 -0.35 -14.24 15 10 H 0.07 1.70 7.86 -52.49 -0.41 1.28 15 11 C 0.09 2.26 5.49 -17.35 -0.10 2.16 15 12 N -0.74 -20.72 11.75 55.56 0.65 -20.07 15 13 Si 0.92 18.59 29.56 -169.99 -5.03 13.56 15 14 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 15 H -0.28 -5.51 7.11 56.52 0.40 -5.11 15 16 H -0.26 -5.13 7.11 56.52 0.40 -4.72 15 17 N -0.50 -9.08 7.42 31.22 0.23 -8.85 15 18 H 0.43 5.88 8.96 -182.62 -1.64 4.25 15 19 N -0.37 -7.38 12.08 30.50 0.37 -7.01 15 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 22 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.18 4.86 5.81 -52.49 -0.31 4.56 15 24 H 0.39 6.87 8.78 -40.82 -0.36 6.52 15 25 H 0.28 6.92 8.29 -40.82 -0.34 6.58 15 LS Contribution 232.80 15.07 3.51 3.51 Total: -1.00 -32.81 232.80 -4.84 -37.64 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -3.11 Total: 9.45 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -1.23 Total: 8.80 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 1.18 Total: -50.50 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.15 Total: -22.46 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -32.81 -4.84 -37.64 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600256668.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.211 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds