Wall clock time and date at job start Sun Mar 29 2020 22:02:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35952 * 117.00244 * 2 1
4 4 C 1.39814 * 125.77915 * 180.02562 * 3 2 1
5 5 C 1.36652 * 107.81679 * 180.02562 * 4 3 2
6 6 N 1.38477 * 126.27795 * 179.97438 * 5 4 3
7 7 C 1.34780 * 119.99672 * 359.72321 * 6 5 4
8 8 O 1.21828 * 119.99754 * 0.02562 * 7 6 5
9 9 C 1.41429 * 119.99883 * 180.02562 * 7 6 5
10 10 H 1.07996 * 120.00115 * 353.74998 * 9 7 6
11 11 C 1.40160 * 120.00006 * 173.75535 * 9 7 6
12 12 N 1.30618 * 119.99849 * 6.25466 * 11 9 7
13 13 Si 1.86794 * 119.99985 * 186.25901 * 11 9 7
14 14 H 1.48509 * 109.47141 * 94.98297 * 13 11 9
15 15 H 1.48496 * 109.47426 * 214.98002 * 13 11 9
16 16 H 1.48495 * 109.47239 * 334.98454 * 13 11 9
17 17 N 1.36165 * 107.44956 * 0.26087 * 5 4 3
18 18 H 0.97003 * 126.08467 * 179.70637 * 17 5 4
19 19 N 1.31374 * 125.77785 * 0.02562 * 3 2 1
20 20 H 1.09004 * 109.46619 * 300.00011 * 1 2 3
21 21 H 1.08996 * 109.46765 * 59.99983 * 1 2 3
22 22 H 1.08992 * 109.47069 * 180.02562 * 1 2 3
23 23 H 1.07991 * 126.09102 * 0.03564 * 4 3 2
24 24 H 0.97001 * 120.00219 * 180.02562 * 6 5 4
25 25 H 0.97001 * 119.99828 * 180.02562 * 12 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2113 0.0000
4 6 3.4281 1.4247 -0.0005
5 6 3.6428 2.7742 0.0003
6 7 4.8740 3.4080 0.0006
7 6 6.0073 2.6786 0.0058
8 8 5.9485 1.4617 0.0097
9 6 7.2648 3.3258 0.0067
10 1 7.3197 4.3992 -0.0986
11 6 8.4398 2.5742 0.1441
12 7 8.3835 1.2692 0.1485
13 14 10.0862 3.4386 0.3210
14 1 10.4235 3.5711 1.7612
15 1 11.1384 2.6444 -0.3626
16 1 10.0058 4.7875 -0.2946
17 7 2.4241 3.3815 0.0071
18 1 2.2624 4.3380 0.0133
19 7 1.4454 2.3796 0.0005
20 1 -0.3633 0.5139 0.8900
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3633 -1.0276 0.0005
23 1 4.1899 0.6593 -0.0015
24 1 4.9208 4.3769 0.0015
25 1 9.1966 0.7490 0.2439
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000600256668.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:02:46
Heat of formation + Delta-G solvation = 6.568682 kcal
Electronic energy + Delta-G solvation = -13474.276697 eV
Core-core repulsion = 10876.467989 eV
Total energy + Delta-G solvation = -2597.808708 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 211.074 amu
Computer time = 0.12 seconds
Orbital eigenvalues (eV)
-40.58679 -38.11690 -37.17321 -33.51784 -32.50575 -30.07495 -28.61674 -26.98771
-26.32272 -21.72259 -20.90715 -19.42111 -18.22615 -16.77715 -16.21236 -15.64406
-15.54966 -14.79129 -14.02217 -13.98225 -13.52385 -12.61392 -12.57075 -12.41151
-11.66437 -11.46151 -11.25369 -10.99050 -10.75071 -10.43123 -9.91862 -9.62008
-8.98457 -8.02872 -7.79370 -7.11175 -6.47852 -5.01252 2.58100 3.01543
3.03820 3.10582 3.13749 3.63829 3.65871 3.96908 4.36568 4.73853
5.35314 5.49257 5.56624 5.61179 5.77401 6.33777 6.47650 7.11929
7.20785 7.33099 7.71277 7.86971 8.01167 8.14038 8.41727 8.70432
9.12947 10.27218 10.45941
Molecular weight = 211.07amu
Principal moments of inertia in cm(-1)
A = 0.075607 B = 0.007110 C = 0.006527
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 370.244822 B = 3937.398311 C = 4289.075158
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.292 6.292
3 C 0.273 3.727
4 C -0.306 4.306
5 C 0.371 3.629
6 N -0.669 5.669
7 C 0.545 3.455
8 O -0.548 6.548
9 C -0.534 4.534
10 H 0.073 0.927
11 C 0.088 3.912
12 N -0.742 5.742
13 Si 0.917 3.083
14 H -0.270 1.270
15 H -0.276 1.276
16 H -0.262 1.262
17 N -0.504 5.504
18 H 0.431 0.569
19 N -0.375 5.375
20 H 0.051 0.949
21 H 0.052 0.948
22 H 0.093 0.907
23 H 0.180 0.820
24 H 0.393 0.607
25 H 0.276 0.724
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.037 3.780 0.116 7.989
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 O -0.196 6.196
3 C 0.070 3.930
4 C -0.339 4.339
5 C 0.147 3.853
6 N -0.316 5.316
7 C 0.354 3.646
8 O -0.429 6.429
9 C -0.570 4.570
10 H 0.091 0.909
11 C -0.136 4.136
12 N -0.369 5.369
13 Si 0.741 3.259
14 H -0.195 1.195
15 H -0.201 1.201
16 H -0.186 1.186
17 N -0.225 5.225
18 H 0.274 0.726
19 N -0.217 5.217
20 H 0.070 0.930
21 H 0.070 0.930
22 H 0.111 0.889
23 H 0.197 0.803
24 H 0.226 0.774
25 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -7.854 2.885 0.119 8.368
hybrid contribution 1.149 1.278 0.100 1.722
sum -6.704 4.163 0.219 7.895
Atomic orbital electron populations
1.22847 0.78879 1.02679 1.01621 1.86290 1.21099 1.22473 1.89720
1.20417 0.91823 0.84577 0.96183 1.21020 0.92947 0.94853 1.25034
1.18440 0.80892 0.90810 0.95165 1.43926 1.02221 1.09873 1.75622
1.17027 0.81843 0.87107 0.78579 1.90618 1.84710 1.13358 1.54168
1.19876 0.89504 0.95094 1.52504 0.90872 1.25763 1.00797 0.94559
0.92528 1.69994 1.29705 1.05962 1.31196 0.86199 0.80598 0.80041
0.79105 1.19490 1.20122 1.18645 1.45766 1.01575 1.07603 1.67531
0.72568 1.77254 1.11525 0.94976 1.37993 0.92981 0.92973 0.88906
0.80269 0.77362 0.91344
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.49 10.69 101.05 1.08 1.57 15
2 O -0.29 -5.59 10.58 -19.59 -0.21 -5.80 15
3 C 0.27 5.83 7.87 -17.16 -0.13 5.70 15
4 C -0.31 -7.32 9.66 -39.57 -0.38 -7.70 15
5 C 0.37 8.01 8.10 -153.11 -1.24 6.77 15
6 N -0.67 -14.50 5.37 -14.02 -0.08 -14.57 15
7 C 0.55 14.65 7.51 -15.04 -0.11 14.54 15
8 O -0.55 -16.72 12.00 5.07 0.06 -16.66 15
9 C -0.53 -13.89 9.29 -37.65 -0.35 -14.24 15
10 H 0.07 1.70 7.86 -52.49 -0.41 1.28 15
11 C 0.09 2.26 5.49 -17.35 -0.10 2.16 15
12 N -0.74 -20.72 11.75 55.56 0.65 -20.07 15
13 Si 0.92 18.59 29.56 -169.99 -5.03 13.56 15
14 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15
15 H -0.28 -5.51 7.11 56.52 0.40 -5.11 15
16 H -0.26 -5.13 7.11 56.52 0.40 -4.72 15
17 N -0.50 -9.08 7.42 31.22 0.23 -8.85 15
18 H 0.43 5.88 8.96 -182.62 -1.64 4.25 15
19 N -0.37 -7.38 12.08 30.50 0.37 -7.01 15
20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15
21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15
22 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15
23 H 0.18 4.86 5.81 -52.49 -0.31 4.56 15
24 H 0.39 6.87 8.78 -40.82 -0.36 6.52 15
25 H 0.28 6.92 8.29 -40.82 -0.34 6.58 15
LS Contribution 232.80 15.07 3.51 3.51
Total: -1.00 -32.81 232.80 -4.84 -37.64
By element:
Atomic # 1 Polarization: 12.57 SS G_CDS: -3.11 Total: 9.45 kcal
Atomic # 6 Polarization: 10.03 SS G_CDS: -1.23 Total: 8.80 kcal
Atomic # 7 Polarization: -51.68 SS G_CDS: 1.18 Total: -50.50 kcal
Atomic # 8 Polarization: -22.32 SS G_CDS: -0.15 Total: -22.46 kcal
Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal
Total LS contribution 3.51 Total: 3.51 kcal
Total: -32.81 -4.84 -37.64 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000600256668.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.211 kcal
(2) G-P(sol) polarization free energy of solvation -32.807 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.404 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.836 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.569 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.13 seconds