Wall clock time and date at job start Sun Mar 29 2020 22:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35952 * 117.00244 * 2 1 4 4 C 1.39814 * 125.77915 * 180.02562 * 3 2 1 5 5 C 1.36652 * 107.81679 * 180.02562 * 4 3 2 6 6 N 1.38477 * 126.27795 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99672 * 359.72321 * 6 5 4 8 8 O 1.21828 * 119.99754 * 0.02562 * 7 6 5 9 9 C 1.41429 * 119.99883 * 180.02562 * 7 6 5 10 10 H 1.07996 * 120.00115 * 353.74998 * 9 7 6 11 11 C 1.40160 * 120.00006 * 173.75535 * 9 7 6 12 12 N 1.30618 * 119.99849 * 6.25466 * 11 9 7 13 13 Si 1.86794 * 119.99985 * 186.25901 * 11 9 7 14 14 H 1.48509 * 109.47141 * 94.98297 * 13 11 9 15 15 H 1.48496 * 109.47426 * 214.98002 * 13 11 9 16 16 H 1.48495 * 109.47239 * 334.98454 * 13 11 9 17 17 N 1.36165 * 107.44956 * 0.26087 * 5 4 3 18 18 H 0.97003 * 126.08467 * 179.70637 * 17 5 4 19 19 N 1.31374 * 125.77785 * 0.02562 * 3 2 1 20 20 H 1.09004 * 109.46619 * 300.00011 * 1 2 3 21 21 H 1.08996 * 109.46765 * 59.99983 * 1 2 3 22 22 H 1.08992 * 109.47069 * 180.02562 * 1 2 3 23 23 H 1.07991 * 126.09102 * 0.03564 * 4 3 2 24 24 H 0.97001 * 120.00219 * 180.02562 * 6 5 4 25 25 H 0.97001 * 119.99828 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 3.4281 1.4247 -0.0005 5 6 3.6428 2.7742 0.0003 6 7 4.8740 3.4080 0.0006 7 6 6.0073 2.6786 0.0058 8 8 5.9485 1.4617 0.0097 9 6 7.2648 3.3258 0.0067 10 1 7.3197 4.3992 -0.0986 11 6 8.4398 2.5742 0.1441 12 7 8.3835 1.2692 0.1485 13 14 10.0862 3.4386 0.3210 14 1 10.4235 3.5711 1.7612 15 1 11.1384 2.6444 -0.3626 16 1 10.0058 4.7875 -0.2946 17 7 2.4241 3.3815 0.0071 18 1 2.2624 4.3380 0.0133 19 7 1.4454 2.3796 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 4.1899 0.6593 -0.0015 24 1 4.9208 4.3769 0.0015 25 1 9.1966 0.7490 0.2439 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600256668.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:46 Heat of formation + Delta-G solvation = -20.856983 kcal Electronic energy + Delta-G solvation = -13475.465963 eV Core-core repulsion = 10876.467989 eV Total energy + Delta-G solvation = -2598.997974 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.25497 -39.86797 -38.85069 -35.40010 -34.52625 -31.68861 -30.42099 -28.49930 -27.95658 -23.59729 -22.47152 -21.23594 -20.01981 -18.61866 -17.71991 -17.55360 -17.00809 -16.40449 -15.71552 -15.63356 -15.10530 -14.46873 -14.40614 -14.21341 -13.26564 -12.87102 -12.81862 -12.69364 -12.38178 -12.01007 -11.59268 -11.38826 -10.92302 -9.88108 -9.61124 -8.92280 -8.41999 -7.05353 0.87992 1.42161 1.44268 1.53462 1.62789 1.87489 2.12885 2.29984 2.44580 3.18919 3.60089 3.83771 4.42279 4.46468 4.64478 4.66220 4.83932 5.21241 5.44037 5.66092 5.83175 6.02375 6.26612 6.59199 6.71651 6.80912 7.29856 8.31534 8.52131 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.075607 B = 0.007110 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.244822 B = 3937.398311 C = 4289.075158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.272 3.728 4 C -0.347 4.347 5 C 0.371 3.629 6 N -0.656 5.656 7 C 0.529 3.471 8 O -0.596 6.596 9 C -0.554 4.554 10 H 0.101 0.899 11 C 0.032 3.968 12 N -0.796 5.796 13 Si 1.005 2.995 14 H -0.263 1.263 15 H -0.273 1.273 16 H -0.244 1.244 17 N -0.476 5.476 18 H 0.453 0.547 19 N -0.359 5.359 20 H 0.058 0.942 21 H 0.058 0.942 22 H 0.128 0.872 23 H 0.140 0.860 24 H 0.415 0.585 25 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.268 5.790 0.195 9.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.214 6.214 3 C 0.069 3.931 4 C -0.380 4.380 5 C 0.146 3.854 6 N -0.304 5.304 7 C 0.339 3.661 8 O -0.481 6.481 9 C -0.589 4.589 10 H 0.119 0.881 11 C -0.188 4.188 12 N -0.424 5.424 13 Si 0.824 3.176 14 H -0.188 1.188 15 H -0.198 1.198 16 H -0.167 1.167 17 N -0.200 5.200 18 H 0.302 0.698 19 N -0.203 5.203 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.146 0.854 23 H 0.158 0.842 24 H 0.252 0.748 25 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.155 4.969 0.194 9.552 hybrid contribution 1.082 0.616 0.066 1.247 sum -7.073 5.585 0.260 9.016 Atomic orbital electron populations 1.23229 0.75852 1.05336 1.02220 1.86270 1.24118 1.21590 1.89428 1.20338 0.91002 0.85643 0.96125 1.20799 0.93812 0.95482 1.27860 1.18207 0.81733 0.90522 0.94946 1.43371 1.01342 1.10732 1.74989 1.17454 0.83459 0.86868 0.78365 1.90614 1.85829 1.15468 1.56146 1.20445 0.89595 0.96589 1.52249 0.88104 1.27064 1.05463 0.95096 0.91134 1.70152 1.31434 1.08345 1.32486 0.84879 0.74225 0.79155 0.79336 1.18750 1.19815 1.16656 1.45660 0.99856 1.08547 1.65889 0.69822 1.77232 1.11284 0.94560 1.37177 0.92322 0.92303 0.85377 0.84249 0.74799 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.69 113.37 1.21 1.93 15 2 O -0.31 -11.80 10.58 -93.01 -0.98 -12.78 15 3 C 0.27 11.63 7.87 85.14 0.67 12.30 15 4 C -0.35 -17.13 9.66 22.28 0.22 -16.92 15 5 C 0.37 16.00 8.10 131.49 1.06 17.06 15 6 N -0.66 -28.24 5.37 -316.43 -1.70 -29.94 15 7 C 0.53 28.97 7.51 85.03 0.64 29.61 15 8 O -0.60 -38.16 12.00 -4.76 -0.06 -38.21 15 9 C -0.55 -28.62 9.29 23.52 0.22 -28.40 15 10 H 0.10 4.47 7.86 -2.91 -0.02 4.45 15 11 C 0.03 1.63 5.49 85.34 0.47 2.09 15 12 N -0.80 -45.70 11.75 21.86 0.26 -45.44 15 13 Si 1.01 37.30 29.56 68.60 2.03 39.33 15 14 H -0.26 -9.40 7.11 99.48 0.71 -8.69 15 15 H -0.27 -9.91 7.11 99.48 0.71 -9.20 15 16 H -0.24 -8.23 7.11 99.48 0.71 -7.52 15 17 N -0.48 -16.27 7.42 -55.15 -0.41 -16.68 15 18 H 0.45 11.02 8.96 -213.34 -1.91 9.11 15 19 N -0.36 -13.56 12.08 -170.57 -2.06 -15.62 15 20 H 0.06 1.43 8.14 -2.39 -0.02 1.41 15 21 H 0.06 1.43 8.14 -2.39 -0.02 1.41 15 22 H 0.13 2.35 8.14 -2.39 -0.02 2.33 15 23 H 0.14 8.12 5.81 -2.92 -0.02 8.10 15 24 H 0.42 13.82 8.78 -92.71 -0.81 13.01 15 25 H 0.28 14.54 8.29 -92.71 -0.77 13.77 15 Total: -1.00 -73.59 232.80 0.09 -73.50 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -1.47 Total: 28.16 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 4.49 Total: 17.68 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -3.91 Total: -107.68 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -1.04 Total: -50.99 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.33 kcal Total: -73.59 0.09 -73.50 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600256668.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.642 kcal (2) G-P(sol) polarization free energy of solvation -73.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds