Wall clock time and date at job start Sun Mar 29 2020 21:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47516 * 2 1 4 4 C 1.52993 * 109.47516 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47298 * 305.00061 * 4 3 2 6 6 N 1.46902 * 109.46879 * 64.99817 * 4 3 2 7 7 C 1.50694 * 109.47287 * 184.99560 * 4 3 2 8 8 C 1.34946 * 125.48939 * 124.98082 * 7 4 3 9 9 N 1.36664 * 106.73090 * 180.02562 * 8 7 4 10 10 C 1.37567 * 126.88530 * 180.02562 * 9 8 7 11 11 H 1.08010 * 120.00372 * 354.19301 * 10 9 8 12 12 C 1.39008 * 120.00083 * 174.19491 * 10 9 8 13 13 N 1.31250 * 120.00060 * 5.91112 * 12 10 9 14 14 Si 1.86804 * 120.00154 * 185.90979 * 12 10 9 15 15 H 1.48500 * 109.47076 * 94.97830 * 14 12 10 16 16 H 1.48505 * 109.47183 * 214.98234 * 14 12 10 17 17 H 1.48504 * 109.47219 * 334.97877 * 14 12 10 18 18 N 1.40325 * 106.23096 * 0.02562 * 9 8 7 19 19 N 1.28757 * 108.02482 * 359.97438 * 18 9 8 20 20 H 1.08999 * 109.47287 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47226 * 299.99650 * 1 2 3 22 22 H 1.09001 * 109.47417 * 60.00276 * 1 2 3 23 23 H 1.09003 * 109.47516 * 239.99903 * 2 1 3 24 24 H 1.09001 * 109.47417 * 119.99724 * 2 1 3 25 25 H 1.09003 * 109.46807 * 59.99469 * 3 2 1 26 26 H 1.09001 * 109.46552 * 300.00253 * 3 2 1 27 27 H 1.00900 * 111.00583 * 296.04805 * 6 4 3 28 28 H 1.00900 * 111.00183 * 59.99953 * 6 4 3 29 29 H 1.08009 * 126.63237 * 0.06521 * 8 7 4 30 30 H 0.97004 * 120.00412 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 7 4.0601 0.8569 -1.2543 7 6 4.0723 2.8579 0.1244 8 6 4.9269 3.3062 1.0675 9 7 5.1204 4.6367 0.8226 10 6 5.9185 5.5002 1.5366 11 1 6.3992 5.1659 2.4443 12 6 6.1064 6.8032 1.0901 13 7 5.4329 7.2453 0.0540 14 14 7.3175 7.9248 1.9646 15 1 8.6293 7.8741 1.2705 16 1 6.8025 9.3176 1.9488 17 1 7.4833 7.4744 3.3700 18 7 4.3418 4.9456 -0.3032 19 7 3.7428 3.8701 -0.6806 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 3.7907 -0.1124 -1.3306 28 1 3.7369 1.3857 -2.0506 29 1 5.3724 2.7256 1.8619 30 1 5.5642 8.1544 -0.2579 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600972237.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:51 Heat of formation + Delta-G solvation = 69.809185 kcal Electronic energy + Delta-G solvation = -13592.096889 eV Core-core repulsion = 11230.582252 eV Total energy + Delta-G solvation = -2361.514637 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.06553 -36.54171 -33.99988 -32.45884 -31.18864 -28.88706 -27.01534 -25.56176 -22.86251 -21.42963 -20.44784 -19.45306 -17.27772 -15.54149 -15.48758 -14.96197 -14.42563 -14.24173 -13.48219 -13.28382 -12.89615 -12.75179 -12.14539 -11.86506 -11.58554 -11.36529 -11.25992 -11.04725 -10.69511 -10.50337 -10.39997 -9.89222 -9.48325 -9.15000 -8.64100 -8.14832 -7.32494 -6.77835 -4.56993 2.86128 2.98180 3.04334 3.38899 3.72638 4.12620 4.69612 4.85089 5.08965 5.14403 5.30384 5.37380 5.70228 5.79821 5.89961 5.94266 6.09037 6.17613 6.27197 6.38528 6.50331 6.67124 6.82596 7.01939 7.19108 7.68069 7.87797 7.95357 8.02925 8.56734 9.18737 10.19616 10.27792 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.071713 B = 0.006527 C = 0.006483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.351180 B = 4288.924328 C = 4318.158010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.145 4.145 4 C 0.193 3.807 5 H 0.076 0.924 6 N -0.839 5.839 7 C -0.062 4.062 8 C -0.109 4.109 9 N -0.149 5.149 10 C -0.317 4.317 11 H 0.120 0.880 12 C 0.048 3.952 13 N -0.762 5.762 14 Si 0.941 3.059 15 H -0.268 1.268 16 H -0.274 1.274 17 H -0.261 1.261 18 N -0.094 5.094 19 N -0.324 5.324 20 H 0.049 0.951 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.328 0.672 28 H 0.343 0.657 29 H 0.153 0.847 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.976 -8.326 2.556 9.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.185 4.185 4 C 0.080 3.920 5 H 0.095 0.905 6 N -0.368 5.368 7 C -0.210 4.210 8 C -0.263 4.263 9 N 0.079 4.921 10 C -0.453 4.453 11 H 0.137 0.863 12 C -0.172 4.172 13 N -0.389 5.389 14 Si 0.764 3.236 15 H -0.193 1.193 16 H -0.198 1.198 17 H -0.185 1.185 18 N -0.071 5.071 19 N -0.185 5.185 20 H 0.068 0.932 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.140 0.860 28 H 0.156 0.844 29 H 0.170 0.830 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.785 -6.836 1.624 7.558 hybrid contribution -0.028 -0.297 1.041 1.082 sum -2.813 -7.133 2.665 8.118 Atomic orbital electron populations 1.21753 0.96205 1.00940 1.01869 1.21579 0.95711 0.97620 1.01402 1.22360 0.97666 0.95460 1.03025 1.19330 0.90516 0.89987 0.92214 0.90547 1.58913 1.67606 1.05657 1.04661 1.20472 1.06324 0.95276 0.98906 1.22295 1.10422 0.86745 1.06876 1.46660 1.23293 1.05015 1.17117 1.20125 1.24961 0.92419 1.07841 0.86276 1.25764 0.97411 0.97857 0.96125 1.70152 1.32236 1.17140 1.19324 0.85699 0.79467 0.78710 0.79686 1.19329 1.19840 1.18507 1.82515 1.09584 1.14015 1.00969 1.73930 1.21760 0.98039 1.24734 0.93232 0.92826 0.92863 0.92507 0.92207 0.91850 0.91542 0.86003 0.84369 0.82955 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.15 0.37 -1.31 16 2 C -0.13 -1.54 5.70 -26.73 -0.15 -1.69 16 3 C -0.15 -2.33 4.82 -26.73 -0.13 -2.45 16 4 C 0.19 3.49 3.28 -68.87 -0.23 3.26 16 5 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 6 N -0.84 -14.05 9.17 -5.66 -0.05 -14.10 16 7 C -0.06 -1.48 5.92 -83.06 -0.49 -1.97 16 8 C -0.11 -2.68 11.45 -16.57 -0.19 -2.87 16 9 N -0.15 -4.18 3.78 -11.47 -0.04 -4.22 16 10 C -0.32 -8.37 10.30 -14.69 -0.15 -8.53 16 11 H 0.12 2.80 7.84 -52.48 -0.41 2.39 16 12 C 0.05 1.21 5.50 -17.51 -0.10 1.12 16 13 N -0.76 -21.02 11.91 55.50 0.66 -20.36 16 14 Si 0.94 18.48 29.56 -169.99 -5.02 13.46 16 15 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 16 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 17 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 18 N -0.09 -2.81 11.75 60.35 0.71 -2.10 16 19 N -0.32 -8.83 12.29 33.16 0.41 -8.42 16 20 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.64 6.87 -51.93 -0.36 0.28 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.33 4.37 7.55 -39.29 -0.30 4.07 16 28 H 0.34 6.03 8.99 -39.29 -0.35 5.67 16 29 H 0.15 3.18 8.06 -52.48 -0.42 2.75 16 30 H 0.28 7.00 8.31 -40.82 -0.34 6.67 16 LS Contribution 261.22 15.07 3.94 3.94 Total: -1.00 -31.24 261.22 -4.40 -35.65 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -3.93 Total: 10.60 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -1.07 Total: -14.44 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 1.68 Total: -49.20 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.46 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.24 -4.40 -35.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600972237.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.457 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds