Wall clock time and date at job start Sun Mar 29 2020 21:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47516 * 2 1 4 4 C 1.52993 * 109.47516 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47298 * 305.00061 * 4 3 2 6 6 N 1.46902 * 109.46879 * 64.99817 * 4 3 2 7 7 C 1.50694 * 109.47287 * 184.99560 * 4 3 2 8 8 C 1.34946 * 125.48939 * 124.98082 * 7 4 3 9 9 N 1.36664 * 106.73090 * 180.02562 * 8 7 4 10 10 C 1.37567 * 126.88530 * 180.02562 * 9 8 7 11 11 H 1.08010 * 120.00372 * 354.19301 * 10 9 8 12 12 C 1.39008 * 120.00083 * 174.19491 * 10 9 8 13 13 N 1.31250 * 120.00060 * 5.91112 * 12 10 9 14 14 Si 1.86804 * 120.00154 * 185.90979 * 12 10 9 15 15 H 1.48500 * 109.47076 * 94.97830 * 14 12 10 16 16 H 1.48505 * 109.47183 * 214.98234 * 14 12 10 17 17 H 1.48504 * 109.47219 * 334.97877 * 14 12 10 18 18 N 1.40325 * 106.23096 * 0.02562 * 9 8 7 19 19 N 1.28757 * 108.02482 * 359.97438 * 18 9 8 20 20 H 1.08999 * 109.47287 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47226 * 299.99650 * 1 2 3 22 22 H 1.09001 * 109.47417 * 60.00276 * 1 2 3 23 23 H 1.09003 * 109.47516 * 239.99903 * 2 1 3 24 24 H 1.09001 * 109.47417 * 119.99724 * 2 1 3 25 25 H 1.09003 * 109.46807 * 59.99469 * 3 2 1 26 26 H 1.09001 * 109.46552 * 300.00253 * 3 2 1 27 27 H 1.00900 * 111.00583 * 296.04805 * 6 4 3 28 28 H 1.00900 * 111.00183 * 59.99953 * 6 4 3 29 29 H 1.08009 * 126.63237 * 0.06521 * 8 7 4 30 30 H 0.97004 * 120.00412 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 7 4.0601 0.8569 -1.2543 7 6 4.0723 2.8579 0.1244 8 6 4.9269 3.3062 1.0675 9 7 5.1204 4.6367 0.8226 10 6 5.9185 5.5002 1.5366 11 1 6.3992 5.1659 2.4443 12 6 6.1064 6.8032 1.0901 13 7 5.4329 7.2453 0.0540 14 14 7.3175 7.9248 1.9646 15 1 8.6293 7.8741 1.2705 16 1 6.8025 9.3176 1.9488 17 1 7.4833 7.4744 3.3700 18 7 4.3418 4.9456 -0.3032 19 7 3.7428 3.8701 -0.6806 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 3.7907 -0.1124 -1.3306 28 1 3.7369 1.3857 -2.0506 29 1 5.3724 2.7256 1.8619 30 1 5.5642 8.1544 -0.2579 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600972237.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:51 Heat of formation + Delta-G solvation = 46.563915 kcal Electronic energy + Delta-G solvation = -13593.104879 eV Core-core repulsion = 11230.582252 eV Total energy + Delta-G solvation = -2362.522628 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.02364 -37.91134 -35.89921 -33.68733 -33.16541 -30.66527 -28.39620 -27.44936 -24.30057 -23.31375 -21.79260 -21.29933 -19.12606 -17.45626 -16.97914 -16.21535 -15.92249 -15.82335 -15.08558 -15.02221 -14.37050 -14.03760 -13.65748 -13.50813 -13.16126 -12.97259 -12.54394 -12.29832 -12.06722 -11.90536 -11.73433 -11.51304 -11.32933 -11.09811 -10.62821 -9.57804 -9.22797 -8.68788 -6.61017 1.12403 1.37531 1.57861 1.64920 2.07211 2.22531 2.80319 2.92684 3.86270 3.97888 4.09753 4.16588 4.38494 4.44879 4.60467 4.72507 4.83168 4.88974 4.95858 5.08599 5.14273 5.24673 5.29579 5.43352 5.49462 5.98291 6.01663 6.32583 6.61579 6.79393 7.21308 8.25440 8.33237 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.071713 B = 0.006527 C = 0.006483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.351180 B = 4288.924328 C = 4318.158010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.136 4.136 4 C 0.195 3.805 5 H 0.099 0.901 6 N -0.842 5.842 7 C -0.056 4.056 8 C -0.125 4.125 9 N -0.165 5.165 10 C -0.347 4.347 11 H 0.145 0.855 12 C -0.001 4.001 13 N -0.812 5.812 14 Si 1.028 2.972 15 H -0.263 1.263 16 H -0.270 1.270 17 H -0.240 1.240 18 N -0.156 5.156 19 N -0.350 5.350 20 H 0.071 0.929 21 H 0.048 0.952 22 H 0.046 0.954 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.350 0.650 28 H 0.338 0.662 29 H 0.189 0.811 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 -9.675 3.976 10.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.176 4.176 4 C 0.082 3.918 5 H 0.116 0.884 6 N -0.373 5.373 7 C -0.205 4.205 8 C -0.279 4.279 9 N 0.063 4.937 10 C -0.483 4.483 11 H 0.162 0.838 12 C -0.216 4.216 13 N -0.439 5.439 14 Si 0.845 3.155 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.163 1.163 18 N -0.132 5.132 19 N -0.208 5.208 20 H 0.090 0.910 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.166 0.834 28 H 0.150 0.850 29 H 0.206 0.794 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.033 -8.230 3.029 9.002 hybrid contribution -0.295 0.031 0.604 0.673 sum -2.328 -8.199 3.633 9.265 Atomic orbital electron populations 1.21753 0.95381 1.02226 1.01419 1.21524 0.96393 0.94726 1.02800 1.22233 0.96203 0.97980 1.01178 1.19446 0.91663 0.87110 0.93622 0.88355 1.58811 1.67720 1.06994 1.03764 1.21421 1.04695 0.97059 0.97281 1.23087 1.10647 0.86165 1.07994 1.47010 1.23326 1.06388 1.16993 1.20966 1.25175 0.93246 1.08886 0.83797 1.27098 0.98860 0.99163 0.96448 1.70310 1.34267 1.17977 1.21389 0.84456 0.76091 0.75819 0.79104 1.18799 1.19501 1.16281 1.82466 1.12012 1.15579 1.03112 1.73884 1.22386 0.98660 1.25917 0.91040 0.93240 0.93478 0.91096 0.90713 0.93459 0.93716 0.83435 0.85022 0.79449 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.91 71.98 0.71 -2.31 16 2 C -0.12 -2.55 5.70 30.59 0.17 -2.38 16 3 C -0.14 -4.23 4.82 30.59 0.15 -4.08 16 4 C 0.19 6.76 3.28 44.16 0.14 6.91 16 5 H 0.10 3.00 8.10 -2.39 -0.02 2.98 16 6 N -0.84 -26.77 9.17 -171.82 -1.58 -28.35 16 7 C -0.06 -2.65 5.92 41.55 0.25 -2.40 16 8 C -0.13 -6.11 11.45 83.18 0.95 -5.16 16 9 N -0.16 -9.37 3.78 -190.20 -0.72 -10.09 16 10 C -0.35 -18.32 10.30 83.98 0.86 -17.46 16 11 H 0.14 6.57 7.84 -2.91 -0.02 6.55 16 12 C 0.00 -0.06 5.50 84.96 0.47 0.41 16 13 N -0.81 -45.98 11.91 21.66 0.26 -45.73 16 14 Si 1.03 37.12 29.56 68.60 2.03 39.15 16 15 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 16 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 17 H -0.24 -7.78 7.11 99.48 0.71 -7.07 16 18 N -0.16 -9.66 11.75 37.02 0.44 -9.22 16 19 N -0.35 -19.62 12.29 -48.99 -0.60 -20.22 16 20 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 21 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 22 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 23 H 0.07 1.37 6.87 -2.39 -0.02 1.35 16 24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.35 8.37 7.55 -89.69 -0.68 7.69 16 28 H 0.34 11.63 8.99 -89.69 -0.81 10.83 16 29 H 0.19 7.46 8.06 -2.91 -0.02 7.43 16 30 H 0.29 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -70.16 261.22 3.20 -66.95 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: -0.33 Total: 33.97 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 3.71 Total: -26.47 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -2.20 Total: -113.60 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Total: -70.16 3.20 -66.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600972237.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.519 kcal (2) G-P(sol) polarization free energy of solvation -70.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds