Wall clock time and date at job start Sun Mar 29 2020 21:41:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.53003 * 109.47516 * 2 1
4 4 C 1.52993 * 109.47516 * 179.97438 * 3 2 1
5 5 H 1.08997 * 109.47298 * 305.00061 * 4 3 2
6 6 N 1.46902 * 109.46879 * 64.99817 * 4 3 2
7 7 C 1.50694 * 109.47287 * 184.99560 * 4 3 2
8 8 C 1.34946 * 125.48939 * 124.98082 * 7 4 3
9 9 N 1.36664 * 106.73090 * 180.02562 * 8 7 4
10 10 C 1.37567 * 126.88530 * 180.02562 * 9 8 7
11 11 H 1.08010 * 120.00372 * 354.19301 * 10 9 8
12 12 C 1.39008 * 120.00083 * 174.19491 * 10 9 8
13 13 N 1.31250 * 120.00060 * 5.91112 * 12 10 9
14 14 Si 1.86804 * 120.00154 * 185.90979 * 12 10 9
15 15 H 1.48500 * 109.47076 * 94.97830 * 14 12 10
16 16 H 1.48505 * 109.47183 * 214.98234 * 14 12 10
17 17 H 1.48504 * 109.47219 * 334.97877 * 14 12 10
18 18 N 1.40325 * 106.23096 * 0.02562 * 9 8 7
19 19 N 1.28757 * 108.02482 * 359.97438 * 18 9 8
20 20 H 1.08999 * 109.47287 * 180.02562 * 1 2 3
21 21 H 1.09005 * 109.47226 * 299.99650 * 1 2 3
22 22 H 1.09001 * 109.47417 * 60.00276 * 1 2 3
23 23 H 1.09003 * 109.47516 * 239.99903 * 2 1 3
24 24 H 1.09001 * 109.47417 * 119.99724 * 2 1 3
25 25 H 1.09003 * 109.46807 * 59.99469 * 3 2 1
26 26 H 1.09001 * 109.46552 * 300.00253 * 3 2 1
27 27 H 1.00900 * 111.00583 * 296.04805 * 6 4 3
28 28 H 1.00900 * 111.00183 * 59.99953 * 6 4 3
29 29 H 1.08009 * 126.63237 * 0.06521 * 8 7 4
30 30 H 0.97004 * 120.00412 * 180.02562 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 0.0006
5 1 3.9330 0.8532 0.8427
6 7 4.0601 0.8569 -1.2543
7 6 4.0723 2.8579 0.1244
8 6 4.9269 3.3062 1.0675
9 7 5.1204 4.6367 0.8226
10 6 5.9185 5.5002 1.5366
11 1 6.3992 5.1659 2.4443
12 6 6.1064 6.8032 1.0901
13 7 5.4329 7.2453 0.0540
14 14 7.3175 7.9248 1.9646
15 1 8.6293 7.8741 1.2705
16 1 6.8025 9.3176 1.9488
17 1 7.4833 7.4744 3.3700
18 7 4.3418 4.9456 -0.3032
19 7 3.7428 3.8701 -0.6806
20 1 -0.3634 -1.0276 0.0005
21 1 -0.3634 0.5138 0.8900
22 1 -0.3634 0.5138 -0.8900
23 1 1.8933 -0.5138 -0.8900
24 1 1.8933 -0.5138 0.8900
25 1 1.6766 1.9563 0.8900
26 1 1.6766 1.9563 -0.8900
27 1 3.7907 -0.1124 -1.3306
28 1 3.7369 1.3857 -2.0506
29 1 5.3724 2.7256 1.8619
30 1 5.5642 8.1544 -0.2579
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000600972237.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:41:51
Heat of formation + Delta-G solvation = 46.563915 kcal
Electronic energy + Delta-G solvation = -13593.104879 eV
Core-core repulsion = 11230.582252 eV
Total energy + Delta-G solvation = -2362.522628 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 210.118 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-42.02364 -37.91134 -35.89921 -33.68733 -33.16541 -30.66527 -28.39620 -27.44936
-24.30057 -23.31375 -21.79260 -21.29933 -19.12606 -17.45626 -16.97914 -16.21535
-15.92249 -15.82335 -15.08558 -15.02221 -14.37050 -14.03760 -13.65748 -13.50813
-13.16126 -12.97259 -12.54394 -12.29832 -12.06722 -11.90536 -11.73433 -11.51304
-11.32933 -11.09811 -10.62821 -9.57804 -9.22797 -8.68788 -6.61017 1.12403
1.37531 1.57861 1.64920 2.07211 2.22531 2.80319 2.92684 3.86270
3.97888 4.09753 4.16588 4.38494 4.44879 4.60467 4.72507 4.83168
4.88974 4.95858 5.08599 5.14273 5.24673 5.29579 5.43352 5.49462
5.98291 6.01663 6.32583 6.61579 6.79393 7.21308 8.25440 8.33237
Molecular weight = 210.12amu
Principal moments of inertia in cm(-1)
A = 0.071713 B = 0.006527 C = 0.006483
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 390.351180 B = 4288.924328 C = 4318.158010
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.117 4.117
3 C -0.136 4.136
4 C 0.195 3.805
5 H 0.099 0.901
6 N -0.842 5.842
7 C -0.056 4.056
8 C -0.125 4.125
9 N -0.165 5.165
10 C -0.347 4.347
11 H 0.145 0.855
12 C -0.001 4.001
13 N -0.812 5.812
14 Si 1.028 2.972
15 H -0.263 1.263
16 H -0.270 1.270
17 H -0.240 1.240
18 N -0.156 5.156
19 N -0.350 5.350
20 H 0.071 0.929
21 H 0.048 0.952
22 H 0.046 0.954
23 H 0.070 0.930
24 H 0.074 0.926
25 H 0.047 0.953
26 H 0.044 0.956
27 H 0.350 0.650
28 H 0.338 0.662
29 H 0.189 0.811
30 H 0.287 0.713
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.193 -9.675 3.976 10.687
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.154 4.154
3 C -0.176 4.176
4 C 0.082 3.918
5 H 0.116 0.884
6 N -0.373 5.373
7 C -0.205 4.205
8 C -0.279 4.279
9 N 0.063 4.937
10 C -0.483 4.483
11 H 0.162 0.838
12 C -0.216 4.216
13 N -0.439 5.439
14 Si 0.845 3.155
15 H -0.188 1.188
16 H -0.195 1.195
17 H -0.163 1.163
18 N -0.132 5.132
19 N -0.208 5.208
20 H 0.090 0.910
21 H 0.068 0.932
22 H 0.065 0.935
23 H 0.089 0.911
24 H 0.093 0.907
25 H 0.065 0.935
26 H 0.063 0.937
27 H 0.166 0.834
28 H 0.150 0.850
29 H 0.206 0.794
30 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -2.033 -8.230 3.029 9.002
hybrid contribution -0.295 0.031 0.604 0.673
sum -2.328 -8.199 3.633 9.265
Atomic orbital electron populations
1.21753 0.95381 1.02226 1.01419 1.21524 0.96393 0.94726 1.02800
1.22233 0.96203 0.97980 1.01178 1.19446 0.91663 0.87110 0.93622
0.88355 1.58811 1.67720 1.06994 1.03764 1.21421 1.04695 0.97059
0.97281 1.23087 1.10647 0.86165 1.07994 1.47010 1.23326 1.06388
1.16993 1.20966 1.25175 0.93246 1.08886 0.83797 1.27098 0.98860
0.99163 0.96448 1.70310 1.34267 1.17977 1.21389 0.84456 0.76091
0.75819 0.79104 1.18799 1.19501 1.16281 1.82466 1.12012 1.15579
1.03112 1.73884 1.22386 0.98660 1.25917 0.91040 0.93240 0.93478
0.91096 0.90713 0.93459 0.93716 0.83435 0.85022 0.79449 0.90338
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.03 9.91 71.98 0.71 -2.31 16
2 C -0.12 -2.55 5.70 30.59 0.17 -2.38 16
3 C -0.14 -4.23 4.82 30.59 0.15 -4.08 16
4 C 0.19 6.76 3.28 44.16 0.14 6.91 16
5 H 0.10 3.00 8.10 -2.39 -0.02 2.98 16
6 N -0.84 -26.77 9.17 -171.82 -1.58 -28.35 16
7 C -0.06 -2.65 5.92 41.55 0.25 -2.40 16
8 C -0.13 -6.11 11.45 83.18 0.95 -5.16 16
9 N -0.16 -9.37 3.78 -190.20 -0.72 -10.09 16
10 C -0.35 -18.32 10.30 83.98 0.86 -17.46 16
11 H 0.14 6.57 7.84 -2.91 -0.02 6.55 16
12 C 0.00 -0.06 5.50 84.96 0.47 0.41 16
13 N -0.81 -45.98 11.91 21.66 0.26 -45.73 16
14 Si 1.03 37.12 29.56 68.60 2.03 39.15 16
15 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16
16 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16
17 H -0.24 -7.78 7.11 99.48 0.71 -7.07 16
18 N -0.16 -9.66 11.75 37.02 0.44 -9.22 16
19 N -0.35 -19.62 12.29 -48.99 -0.60 -20.22 16
20 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16
21 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16
22 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16
23 H 0.07 1.37 6.87 -2.39 -0.02 1.35 16
24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16
25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16
26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16
27 H 0.35 8.37 7.55 -89.69 -0.68 7.69 16
28 H 0.34 11.63 8.99 -89.69 -0.81 10.83 16
29 H 0.19 7.46 8.06 -2.91 -0.02 7.43 16
30 H 0.29 14.67 8.31 -92.71 -0.77 13.90 16
Total: -1.00 -70.16 261.22 3.20 -66.95
By element:
Atomic # 1 Polarization: 34.30 SS G_CDS: -0.33 Total: 33.97 kcal
Atomic # 6 Polarization: -30.18 SS G_CDS: 3.71 Total: -26.47 kcal
Atomic # 7 Polarization: -111.40 SS G_CDS: -2.20 Total: -113.60 kcal
Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal
Total: -70.16 3.20 -66.95 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000600972237.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 113.519 kcal
(2) G-P(sol) polarization free energy of solvation -70.158 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.361 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.955 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.564 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds