Wall clock time and date at job start Sun Mar 29 2020 21:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47500 * 54.99635 * 4 3 2 6 6 N 1.46905 * 109.47325 * 294.99654 * 4 3 2 7 7 C 1.50695 * 109.47464 * 174.99850 * 4 3 2 8 8 C 1.34943 * 125.49091 * 124.99212 * 7 4 3 9 9 N 1.36664 * 106.73051 * 180.02562 * 8 7 4 10 10 C 1.37573 * 126.88975 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99658 * 0.02562 * 10 9 8 12 12 C 1.39006 * 120.00109 * 180.02562 * 10 9 8 13 13 N 1.31249 * 120.00423 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99975 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47329 * 60.00041 * 14 12 10 16 16 H 1.48496 * 109.47492 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46937 * 300.00149 * 14 12 10 18 18 N 1.40326 * 106.22911 * 0.02562 * 9 8 7 19 19 N 1.28765 * 108.02921 * 359.72392 * 18 9 8 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 23 23 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 24 24 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.00896 * 110.99912 * 300.00539 * 6 4 3 28 28 H 1.00908 * 110.99449 * 63.95129 * 6 4 3 29 29 H 1.08004 * 126.63933 * 359.97438 * 8 7 4 30 30 H 0.97002 * 120.00748 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8529 -0.8409 6 7 4.0592 0.8575 1.2562 7 6 4.0724 2.8579 -0.1232 8 6 4.9273 3.4630 0.7277 9 7 5.1208 4.7308 0.2555 10 6 5.9184 5.7055 0.8091 11 1 6.4731 5.5003 1.7128 12 6 6.0103 6.9543 0.2055 13 7 5.3357 7.2038 -0.8924 14 14 7.0938 8.2774 0.9569 15 1 8.4986 7.7983 1.0056 16 1 7.0185 9.5080 0.1293 17 1 6.6253 8.5780 2.3337 18 7 4.3420 4.8396 -0.9067 19 7 3.7469 3.7133 -1.0946 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5137 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.7353 1.3865 2.0520 28 1 3.7896 -0.1119 1.3325 29 1 5.3719 3.0296 1.6114 30 1 5.4001 8.0751 -1.3139 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600972238.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:52 Heat of formation + Delta-G solvation = 71.714354 kcal Electronic energy + Delta-G solvation = -13613.951102 eV Core-core repulsion = 11252.519079 eV Total energy + Delta-G solvation = -2361.432023 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.05906 -36.58856 -33.98387 -32.57017 -31.23845 -28.55067 -27.24768 -25.52905 -22.87742 -21.19051 -20.65228 -19.25820 -17.60143 -15.55572 -15.27218 -15.01758 -14.27059 -14.18296 -13.68950 -13.20341 -13.05615 -12.71121 -12.14510 -11.86323 -11.43863 -11.39473 -11.28742 -11.12977 -10.71305 -10.48134 -10.41822 -9.83064 -9.49318 -9.16486 -8.61981 -8.25836 -7.26744 -6.75049 -4.54801 2.89007 2.99042 3.03618 3.42256 3.74438 4.16762 4.72535 4.88021 5.01855 5.12901 5.14342 5.31110 5.70944 5.80561 5.89184 5.99804 6.09885 6.25068 6.28564 6.51009 6.57441 6.67754 6.86100 7.01654 7.14291 7.60999 7.84071 7.92284 8.00836 8.59387 9.21627 10.22153 10.29643 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.070116 B = 0.006747 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.241736 B = 4148.891268 C = 4370.000514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.145 4.145 4 C 0.194 3.806 5 H 0.076 0.924 6 N -0.839 5.839 7 C -0.072 4.072 8 C -0.096 4.096 9 N -0.153 5.153 10 C -0.317 4.317 11 H 0.119 0.881 12 C 0.047 3.953 13 N -0.764 5.764 14 Si 0.941 3.059 15 H -0.264 1.264 16 H -0.275 1.275 17 H -0.264 1.264 18 N -0.094 5.094 19 N -0.329 5.329 20 H 0.049 0.951 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.338 0.662 28 H 0.334 0.666 29 H 0.159 0.841 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 -7.775 4.884 9.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.185 4.185 4 C 0.080 3.920 5 H 0.094 0.906 6 N -0.369 5.369 7 C -0.219 4.219 8 C -0.250 4.250 9 N 0.075 4.925 10 C -0.453 4.453 11 H 0.136 0.864 12 C -0.172 4.172 13 N -0.391 5.391 14 Si 0.764 3.236 15 H -0.189 1.189 16 H -0.199 1.199 17 H -0.189 1.189 18 N -0.071 5.071 19 N -0.190 5.190 20 H 0.068 0.932 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.176 0.824 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.851 -6.511 3.169 7.782 hybrid contribution -0.095 -0.053 1.496 1.500 sum -2.946 -6.564 4.665 8.575 Atomic orbital electron populations 1.21754 0.96197 1.00948 1.01870 1.21575 0.95722 0.97585 1.01397 1.22355 0.97501 0.95559 1.03060 1.19217 0.90508 0.90476 0.91796 0.90612 1.58797 1.67649 1.06078 1.04328 1.20539 1.06643 0.96902 0.97848 1.22303 1.09787 0.87617 1.05298 1.46688 1.23557 1.07155 1.15082 1.20061 1.23726 0.91093 1.10451 0.86351 1.25755 0.97080 0.98923 0.95423 1.70136 1.31961 1.22967 1.14037 0.85784 0.79793 0.78731 0.79281 1.18865 1.19913 1.18908 1.82523 1.10306 1.12901 1.01354 1.73961 1.22282 0.99823 1.22927 0.93225 0.92669 0.93011 0.92649 0.92060 0.90729 0.92529 0.84893 0.85345 0.82386 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.13 -1.53 5.70 -26.73 -0.15 -1.69 16 3 C -0.14 -2.32 4.83 -26.73 -0.13 -2.45 16 4 C 0.19 3.50 3.35 -68.87 -0.23 3.27 16 5 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 6 N -0.84 -12.55 8.45 -5.65 -0.05 -12.60 16 7 C -0.07 -1.72 6.32 -83.06 -0.53 -2.25 16 8 C -0.10 -2.36 10.68 -16.57 -0.18 -2.53 16 9 N -0.15 -4.30 3.78 -11.47 -0.04 -4.34 16 10 C -0.32 -8.41 10.31 -14.69 -0.15 -8.56 16 11 H 0.12 2.79 7.83 -52.48 -0.41 2.38 16 12 C 0.05 1.21 5.50 -17.52 -0.10 1.11 16 13 N -0.76 -21.17 11.89 55.49 0.66 -20.51 16 14 Si 0.94 18.54 29.55 -169.99 -5.02 13.52 16 15 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 16 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 17 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 18 N -0.09 -2.83 11.73 60.35 0.71 -2.13 16 19 N -0.33 -9.10 12.24 33.16 0.41 -8.69 16 20 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.60 6.87 -51.93 -0.36 0.24 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.34 4.89 8.71 -39.29 -0.34 4.55 16 28 H 0.33 4.02 7.55 -39.29 -0.30 3.73 16 29 H 0.16 3.40 7.72 -52.48 -0.41 2.99 16 30 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 259.49 15.07 3.91 3.91 Total: -1.00 -31.28 259.49 -4.43 -35.71 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -3.90 Total: 9.54 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -1.09 Total: -14.41 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 1.68 Total: -48.27 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.52 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.28 -4.43 -35.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600972238.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.423 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds