Wall clock time and date at job start Sun Mar 29 2020 21:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47500 * 54.99635 * 4 3 2 6 6 N 1.46905 * 109.47325 * 294.99654 * 4 3 2 7 7 C 1.50695 * 109.47464 * 174.99850 * 4 3 2 8 8 C 1.34943 * 125.49091 * 124.99212 * 7 4 3 9 9 N 1.36664 * 106.73051 * 180.02562 * 8 7 4 10 10 C 1.37573 * 126.88975 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99658 * 0.02562 * 10 9 8 12 12 C 1.39006 * 120.00109 * 180.02562 * 10 9 8 13 13 N 1.31249 * 120.00423 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99975 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47329 * 60.00041 * 14 12 10 16 16 H 1.48496 * 109.47492 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46937 * 300.00149 * 14 12 10 18 18 N 1.40326 * 106.22911 * 0.02562 * 9 8 7 19 19 N 1.28765 * 108.02921 * 359.72392 * 18 9 8 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 23 23 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 24 24 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.00896 * 110.99912 * 300.00539 * 6 4 3 28 28 H 1.00908 * 110.99449 * 63.95129 * 6 4 3 29 29 H 1.08004 * 126.63933 * 359.97438 * 8 7 4 30 30 H 0.97002 * 120.00748 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8529 -0.8409 6 7 4.0592 0.8575 1.2562 7 6 4.0724 2.8579 -0.1232 8 6 4.9273 3.4630 0.7277 9 7 5.1208 4.7308 0.2555 10 6 5.9184 5.7055 0.8091 11 1 6.4731 5.5003 1.7128 12 6 6.0103 6.9543 0.2055 13 7 5.3357 7.2038 -0.8924 14 14 7.0938 8.2774 0.9569 15 1 8.4986 7.7983 1.0056 16 1 7.0185 9.5080 0.1293 17 1 6.6253 8.5780 2.3337 18 7 4.3420 4.8396 -0.9067 19 7 3.7469 3.7133 -1.0946 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5137 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.7353 1.3865 2.0520 28 1 3.7896 -0.1119 1.3325 29 1 5.3719 3.0296 1.6114 30 1 5.4001 8.0751 -1.3139 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600972238.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:52 Heat of formation + Delta-G solvation = 48.509494 kcal Electronic energy + Delta-G solvation = -13614.957340 eV Core-core repulsion = 11252.519079 eV Total energy + Delta-G solvation = -2362.438261 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.03831 -37.94852 -35.91032 -33.74446 -33.26438 -30.31308 -28.65919 -27.38603 -24.29034 -23.20501 -21.91644 -21.11588 -19.43152 -17.48775 -16.75043 -16.27573 -15.86436 -15.65493 -15.30189 -14.78205 -14.63680 -14.02829 -13.68324 -13.44626 -13.13957 -13.00025 -12.54878 -12.35505 -12.13199 -11.90597 -11.67370 -11.50032 -11.36834 -11.14491 -10.61687 -9.56677 -9.20985 -8.67311 -6.60566 1.14655 1.37732 1.56265 1.66600 2.08376 2.22485 2.81298 2.94336 3.71704 3.88361 4.10376 4.16428 4.40547 4.53094 4.64908 4.74806 4.85570 4.91312 4.98610 5.08720 5.17054 5.25316 5.28164 5.42978 5.47127 5.96118 5.99056 6.36137 6.62044 6.80244 7.22457 8.25155 8.34141 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.070116 B = 0.006747 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.241736 B = 4148.891268 C = 4370.000514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.135 4.135 4 C 0.199 3.801 5 H 0.076 0.924 6 N -0.834 5.834 7 C -0.065 4.065 8 C -0.106 4.106 9 N -0.168 5.168 10 C -0.347 4.347 11 H 0.144 0.856 12 C -0.002 4.002 13 N -0.814 5.814 14 Si 1.028 2.972 15 H -0.251 1.251 16 H -0.272 1.272 17 H -0.250 1.250 18 N -0.155 5.155 19 N -0.360 5.360 20 H 0.071 0.929 21 H 0.044 0.956 22 H 0.051 0.949 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.344 0.656 28 H 0.355 0.645 29 H 0.189 0.811 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.321 -8.716 6.780 11.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.176 4.176 4 C 0.085 3.915 5 H 0.094 0.906 6 N -0.366 5.366 7 C -0.214 4.214 8 C -0.259 4.259 9 N 0.059 4.941 10 C -0.483 4.483 11 H 0.162 0.838 12 C -0.216 4.216 13 N -0.441 5.441 14 Si 0.845 3.155 15 H -0.174 1.174 16 H -0.197 1.197 17 H -0.173 1.173 18 N -0.131 5.131 19 N -0.219 5.219 20 H 0.090 0.910 21 H 0.063 0.937 22 H 0.070 0.930 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.157 0.843 28 H 0.171 0.829 29 H 0.206 0.794 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.157 -7.501 5.057 9.300 hybrid contribution -0.328 0.154 0.939 1.006 sum -2.485 -7.347 5.995 9.803 Atomic orbital electron populations 1.21753 0.95306 1.02248 1.01453 1.21522 0.96458 0.94712 1.02736 1.22231 0.95972 0.98079 1.01288 1.19192 0.91648 0.87269 0.93398 0.90589 1.58672 1.67536 1.07356 1.03041 1.21480 1.05071 0.98765 0.96059 1.22946 1.09895 0.86830 1.06264 1.47051 1.23558 1.08503 1.14955 1.20919 1.24073 0.91700 1.11588 0.83824 1.27098 0.97985 1.01195 0.95319 1.70302 1.33846 1.23986 1.15970 0.84526 0.77697 0.74652 0.78599 1.17438 1.19697 1.17340 1.82476 1.12767 1.14410 1.03435 1.73915 1.23106 1.00291 1.24542 0.91032 0.93659 0.92977 0.90378 0.91564 0.93685 0.93188 0.84281 0.82934 0.79423 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.91 71.98 0.71 -2.33 16 2 C -0.12 -2.58 5.70 30.60 0.17 -2.41 16 3 C -0.14 -4.24 4.83 30.60 0.15 -4.09 16 4 C 0.20 6.97 3.35 44.17 0.15 7.12 16 5 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 6 N -0.83 -22.79 8.45 -171.80 -1.45 -24.24 16 7 C -0.07 -3.13 6.32 41.55 0.26 -2.87 16 8 C -0.11 -5.19 10.68 83.18 0.89 -4.30 16 9 N -0.17 -9.60 3.78 -190.21 -0.72 -10.32 16 10 C -0.35 -18.40 10.31 83.98 0.87 -17.53 16 11 H 0.14 6.57 7.83 -2.91 -0.02 6.55 16 12 C 0.00 -0.08 5.50 84.96 0.47 0.39 16 13 N -0.81 -46.21 11.89 21.66 0.26 -45.95 16 14 Si 1.03 37.15 29.55 68.60 2.03 39.18 16 15 H -0.25 -8.47 7.11 99.48 0.71 -7.76 16 16 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 17 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 18 N -0.15 -9.69 11.73 37.02 0.43 -9.26 16 19 N -0.36 -20.56 12.24 -48.99 -0.60 -21.16 16 20 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 23 H 0.08 1.40 6.87 -2.39 -0.02 1.38 16 24 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.34 9.04 8.71 -89.70 -0.78 8.26 16 28 H 0.36 7.29 7.55 -89.69 -0.68 6.62 16 29 H 0.19 7.76 7.72 -2.91 -0.02 7.74 16 30 H 0.29 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -70.47 259.49 3.31 -67.16 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: -0.31 Total: 30.62 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 3.67 Total: -26.02 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -2.08 Total: -110.94 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Total: -70.47 3.31 -67.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600972238.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.673 kcal (2) G-P(sol) polarization free energy of solvation -70.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds