Wall clock time and date at job start Sun Mar 29 2020 21:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46880 * 2 1 4 4 C 1.52999 * 109.47243 * 299.99727 * 3 2 1 5 5 N 1.46902 * 109.47220 * 60.00433 * 3 2 1 6 6 C 1.50706 * 109.47101 * 179.97438 * 3 2 1 7 7 C 1.34945 * 125.49011 * 185.00456 * 6 3 2 8 8 N 1.36668 * 106.72577 * 180.20717 * 7 6 3 9 9 C 1.37573 * 126.88380 * 179.77552 * 8 7 6 10 10 H 1.08000 * 119.99677 * 359.97438 * 9 8 7 11 11 C 1.39001 * 120.00084 * 179.97438 * 9 8 7 12 12 N 1.31254 * 120.00176 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00156 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47129 * 90.00189 * 13 11 9 15 15 H 1.48503 * 109.47235 * 210.00320 * 13 11 9 16 16 H 1.48498 * 109.47183 * 330.00238 * 13 11 9 17 17 N 1.40321 * 106.22714 * 359.64622 * 8 7 6 18 18 N 1.28756 * 108.03280 * 0.36116 * 17 8 7 19 19 H 1.09004 * 109.47325 * 59.99947 * 1 2 3 20 20 H 1.08996 * 109.47535 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47426 * 300.00297 * 1 2 3 22 22 H 1.08992 * 109.46875 * 240.00001 * 2 1 3 23 23 H 1.08998 * 109.46753 * 119.99715 * 2 1 3 24 24 H 1.08993 * 109.47269 * 300.00018 * 4 3 2 25 25 H 1.08994 * 109.46848 * 60.00821 * 4 3 2 26 26 H 1.09004 * 109.46743 * 180.02562 * 4 3 2 27 27 H 1.00906 * 110.99519 * 296.03932 * 5 3 2 28 28 H 1.00896 * 111.00678 * 59.99167 * 5 3 2 29 29 H 1.08002 * 126.63240 * 359.93419 * 7 6 3 30 30 H 0.97000 * 120.00647 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5300 2.1637 -1.2493 5 7 1.5503 2.1350 1.1995 6 6 3.5470 1.4426 0.0006 7 6 4.3303 2.5372 0.0967 8 7 5.6244 2.0997 0.0542 9 6 6.7601 2.8736 0.1163 10 1 6.6780 3.9465 0.2082 11 6 8.0132 2.2746 0.0607 12 7 8.1130 0.9706 -0.0506 13 14 9.5553 3.3255 0.1442 14 1 9.9692 3.4853 1.5614 15 1 10.6456 2.6661 -0.6185 16 1 9.2771 4.6604 -0.4437 17 7 5.5624 0.7027 -0.0624 18 7 4.3217 0.3600 -0.0932 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8933 -0.5138 -0.8899 23 1 1.8932 -0.5138 0.8900 24 1 1.8933 1.6500 -2.1392 25 1 0.4400 2.1638 -1.2492 26 1 1.8937 3.1913 -1.2494 27 1 0.5437 2.2051 1.1909 28 1 1.8737 1.6775 2.0386 29 1 3.9987 3.5612 0.1850 30 1 8.9874 0.5526 -0.0898 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600972240.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:46 Heat of formation + Delta-G solvation = 78.934181 kcal Electronic energy + Delta-G solvation = -13962.664295 eV Core-core repulsion = 11601.545347 eV Total energy + Delta-G solvation = -2361.118948 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.12989 -37.05493 -33.93280 -31.22353 -30.54322 -29.04911 -27.46493 -25.81115 -23.82915 -21.19655 -20.33984 -18.88245 -17.21445 -15.51810 -15.29780 -14.66248 -14.36125 -13.95938 -13.77944 -13.32465 -12.95474 -12.15027 -11.96735 -11.68611 -11.41764 -11.39862 -11.31880 -10.84544 -10.79681 -10.49883 -10.33617 -9.87228 -9.45954 -9.16243 -8.61936 -8.16440 -7.30393 -6.75190 -4.54914 2.87833 2.99279 3.04984 3.42469 3.74207 4.14047 4.71560 4.88285 5.06106 5.37083 5.38912 5.46876 5.80418 5.86060 6.03708 6.14185 6.30842 6.41929 6.44077 6.53840 6.70419 6.79827 6.87111 7.01535 7.21148 7.64880 7.90277 7.94387 8.02993 8.59523 9.21600 10.22066 10.29933 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.071817 B = 0.007690 C = 0.007300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.788333 B = 3640.103352 C = 3834.926589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.139 4.139 3 C 0.215 3.785 4 C -0.131 4.131 5 N -0.835 5.835 6 C -0.066 4.066 7 C -0.088 4.088 8 N -0.154 5.154 9 C -0.317 4.317 10 H 0.119 0.881 11 C 0.047 3.953 12 N -0.764 5.764 13 Si 0.941 3.059 14 H -0.268 1.268 15 H -0.274 1.274 16 H -0.261 1.261 17 N -0.095 5.095 18 N -0.328 5.328 19 H 0.056 0.944 20 H 0.049 0.951 21 H 0.047 0.953 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.330 0.670 28 H 0.339 0.661 29 H 0.155 0.845 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.059 3.088 0.298 8.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.178 4.178 3 C 0.121 3.879 4 C -0.189 4.189 5 N -0.365 5.365 6 C -0.213 4.213 7 C -0.243 4.243 8 N 0.075 4.925 9 C -0.453 4.453 10 H 0.137 0.863 11 C -0.172 4.172 12 N -0.391 5.391 13 Si 0.764 3.236 14 H -0.193 1.193 15 H -0.199 1.199 16 H -0.185 1.185 17 N -0.071 5.071 18 N -0.188 5.188 19 H 0.075 0.925 20 H 0.068 0.932 21 H 0.066 0.934 22 H 0.088 0.912 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.144 0.856 28 H 0.152 0.848 29 H 0.172 0.828 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.666 2.112 -0.117 6.993 hybrid contribution -0.174 0.623 0.387 0.754 sum -6.840 2.736 0.270 7.371 Atomic orbital electron populations 1.21904 0.96969 1.01154 1.01246 1.22075 0.94068 0.98385 1.03310 1.18617 0.88662 0.90605 0.90031 1.21811 0.99352 1.00937 0.96813 1.58904 1.14600 1.58632 1.04383 1.20392 0.94231 0.89651 1.17031 1.22256 0.84276 0.99690 1.18092 1.46694 1.04347 1.07281 1.34184 1.20101 0.81840 0.91393 1.51968 0.86329 1.25754 1.00261 0.96234 0.94935 1.70147 1.26292 1.09141 1.33534 0.85722 0.79179 0.79574 0.79137 1.19322 1.19864 1.18534 1.82523 1.08670 0.87385 1.28562 1.73993 0.99357 1.26792 1.18662 0.92532 0.93154 0.93368 0.91178 0.92031 0.92532 0.93183 0.92135 0.85646 0.84820 0.82770 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.22 37.16 0.34 -1.62 16 2 C -0.14 -2.32 4.61 -26.73 -0.12 -2.44 16 3 C 0.22 3.86 0.85 -132.75 -0.11 3.75 16 4 C -0.13 -2.10 8.29 37.16 0.31 -1.79 16 5 N -0.84 -13.09 8.67 -0.19 0.00 -13.09 16 6 C -0.07 -1.55 5.71 -83.05 -0.47 -2.03 16 7 C -0.09 -2.18 11.20 -16.57 -0.19 -2.36 16 8 N -0.15 -4.30 3.78 -11.47 -0.04 -4.34 16 9 C -0.32 -8.40 10.31 -14.69 -0.15 -8.55 16 10 H 0.12 2.81 7.83 -52.49 -0.41 2.40 16 11 C 0.05 1.20 5.50 -17.52 -0.10 1.11 16 12 N -0.76 -21.12 11.89 55.49 0.66 -20.46 16 13 Si 0.94 18.57 29.55 -169.99 -5.02 13.55 16 14 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 15 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 16 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 17 N -0.09 -2.83 11.73 60.35 0.71 -2.12 16 18 N -0.33 -8.92 11.61 33.16 0.38 -8.54 16 19 H 0.06 0.67 6.43 -51.93 -0.33 0.33 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.54 6.76 -51.93 -0.35 0.19 16 22 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.66 6.43 -51.93 -0.33 0.32 16 26 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 27 H 0.33 4.23 7.31 -39.29 -0.29 3.94 16 28 H 0.34 5.43 8.99 -39.29 -0.35 5.08 16 29 H 0.15 3.39 8.06 -52.49 -0.42 2.96 16 30 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 255.01 15.07 3.84 3.84 Total: -1.00 -30.94 255.01 -3.70 -34.64 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -3.74 Total: 10.46 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -0.49 Total: -13.94 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 1.71 Total: -48.55 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.94 -3.70 -34.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600972240.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.576 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds