Wall clock time and date at job start Sun Mar 29 2020 21:41:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52998 * 109.46880 * 2 1
4 4 C 1.52999 * 109.47243 * 299.99727 * 3 2 1
5 5 N 1.46902 * 109.47220 * 60.00433 * 3 2 1
6 6 C 1.50706 * 109.47101 * 179.97438 * 3 2 1
7 7 C 1.34945 * 125.49011 * 185.00456 * 6 3 2
8 8 N 1.36668 * 106.72577 * 180.20717 * 7 6 3
9 9 C 1.37573 * 126.88380 * 179.77552 * 8 7 6
10 10 H 1.08000 * 119.99677 * 359.97438 * 9 8 7
11 11 C 1.39001 * 120.00084 * 179.97438 * 9 8 7
12 12 N 1.31254 * 120.00176 * 359.97438 * 11 9 8
13 13 Si 1.86798 * 120.00156 * 179.97438 * 11 9 8
14 14 H 1.48498 * 109.47129 * 90.00189 * 13 11 9
15 15 H 1.48503 * 109.47235 * 210.00320 * 13 11 9
16 16 H 1.48498 * 109.47183 * 330.00238 * 13 11 9
17 17 N 1.40321 * 106.22714 * 359.64622 * 8 7 6
18 18 N 1.28756 * 108.03280 * 0.36116 * 17 8 7
19 19 H 1.09004 * 109.47325 * 59.99947 * 1 2 3
20 20 H 1.08996 * 109.47535 * 179.97438 * 1 2 3
21 21 H 1.09000 * 109.47426 * 300.00297 * 1 2 3
22 22 H 1.08992 * 109.46875 * 240.00001 * 2 1 3
23 23 H 1.08998 * 109.46753 * 119.99715 * 2 1 3
24 24 H 1.08993 * 109.47269 * 300.00018 * 4 3 2
25 25 H 1.08994 * 109.46848 * 60.00821 * 4 3 2
26 26 H 1.09004 * 109.46743 * 180.02562 * 4 3 2
27 27 H 1.00906 * 110.99519 * 296.03932 * 5 3 2
28 28 H 1.00896 * 111.00678 * 59.99167 * 5 3 2
29 29 H 1.08002 * 126.63240 * 359.93419 * 7 6 3
30 30 H 0.97000 * 120.00647 * 179.97438 * 12 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 1.5300 2.1637 -1.2493
5 7 1.5503 2.1350 1.1995
6 6 3.5470 1.4426 0.0006
7 6 4.3303 2.5372 0.0967
8 7 5.6244 2.0997 0.0542
9 6 6.7601 2.8736 0.1163
10 1 6.6780 3.9465 0.2082
11 6 8.0132 2.2746 0.0607
12 7 8.1130 0.9706 -0.0506
13 14 9.5553 3.3255 0.1442
14 1 9.9692 3.4853 1.5614
15 1 10.6456 2.6661 -0.6185
16 1 9.2771 4.6604 -0.4437
17 7 5.5624 0.7027 -0.0624
18 7 4.3217 0.3600 -0.0932
19 1 -0.3634 0.5139 -0.8900
20 1 -0.3634 -1.0276 -0.0005
21 1 -0.3634 0.5139 0.8899
22 1 1.8933 -0.5138 -0.8899
23 1 1.8932 -0.5138 0.8900
24 1 1.8933 1.6500 -2.1392
25 1 0.4400 2.1638 -1.2492
26 1 1.8937 3.1913 -1.2494
27 1 0.5437 2.2051 1.1909
28 1 1.8737 1.6775 2.0386
29 1 3.9987 3.5612 0.1850
30 1 8.9874 0.5526 -0.0898
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000600972240.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:41:46
Heat of formation + Delta-G solvation = 78.934181 kcal
Electronic energy + Delta-G solvation = -13962.664295 eV
Core-core repulsion = 11601.545347 eV
Total energy + Delta-G solvation = -2361.118948 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 210.118 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-40.12989 -37.05493 -33.93280 -31.22353 -30.54322 -29.04911 -27.46493 -25.81115
-23.82915 -21.19655 -20.33984 -18.88245 -17.21445 -15.51810 -15.29780 -14.66248
-14.36125 -13.95938 -13.77944 -13.32465 -12.95474 -12.15027 -11.96735 -11.68611
-11.41764 -11.39862 -11.31880 -10.84544 -10.79681 -10.49883 -10.33617 -9.87228
-9.45954 -9.16243 -8.61936 -8.16440 -7.30393 -6.75190 -4.54914 2.87833
2.99279 3.04984 3.42469 3.74207 4.14047 4.71560 4.88285 5.06106
5.37083 5.38912 5.46876 5.80418 5.86060 6.03708 6.14185 6.30842
6.41929 6.44077 6.53840 6.70419 6.79827 6.87111 7.01535 7.21148
7.64880 7.90277 7.94387 8.02993 8.59523 9.21600 10.22066 10.29933
Molecular weight = 210.12amu
Principal moments of inertia in cm(-1)
A = 0.071817 B = 0.007690 C = 0.007300
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 389.788333 B = 3640.103352 C = 3834.926589
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.139 4.139
3 C 0.215 3.785
4 C -0.131 4.131
5 N -0.835 5.835
6 C -0.066 4.066
7 C -0.088 4.088
8 N -0.154 5.154
9 C -0.317 4.317
10 H 0.119 0.881
11 C 0.047 3.953
12 N -0.764 5.764
13 Si 0.941 3.059
14 H -0.268 1.268
15 H -0.274 1.274
16 H -0.261 1.261
17 N -0.095 5.095
18 N -0.328 5.328
19 H 0.056 0.944
20 H 0.049 0.951
21 H 0.047 0.953
22 H 0.069 0.931
23 H 0.061 0.939
24 H 0.056 0.944
25 H 0.049 0.951
26 H 0.060 0.940
27 H 0.330 0.670
28 H 0.339 0.661
29 H 0.155 0.845
30 H 0.281 0.719
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.059 3.088 0.298 8.635
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.178 4.178
3 C 0.121 3.879
4 C -0.189 4.189
5 N -0.365 5.365
6 C -0.213 4.213
7 C -0.243 4.243
8 N 0.075 4.925
9 C -0.453 4.453
10 H 0.137 0.863
11 C -0.172 4.172
12 N -0.391 5.391
13 Si 0.764 3.236
14 H -0.193 1.193
15 H -0.199 1.199
16 H -0.185 1.185
17 N -0.071 5.071
18 N -0.188 5.188
19 H 0.075 0.925
20 H 0.068 0.932
21 H 0.066 0.934
22 H 0.088 0.912
23 H 0.080 0.920
24 H 0.075 0.925
25 H 0.068 0.932
26 H 0.079 0.921
27 H 0.144 0.856
28 H 0.152 0.848
29 H 0.172 0.828
30 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -6.666 2.112 -0.117 6.993
hybrid contribution -0.174 0.623 0.387 0.754
sum -6.840 2.736 0.270 7.371
Atomic orbital electron populations
1.21904 0.96969 1.01154 1.01246 1.22075 0.94068 0.98385 1.03310
1.18617 0.88662 0.90605 0.90031 1.21811 0.99352 1.00937 0.96813
1.58904 1.14600 1.58632 1.04383 1.20392 0.94231 0.89651 1.17031
1.22256 0.84276 0.99690 1.18092 1.46694 1.04347 1.07281 1.34184
1.20101 0.81840 0.91393 1.51968 0.86329 1.25754 1.00261 0.96234
0.94935 1.70147 1.26292 1.09141 1.33534 0.85722 0.79179 0.79574
0.79137 1.19322 1.19864 1.18534 1.82523 1.08670 0.87385 1.28562
1.73993 0.99357 1.26792 1.18662 0.92532 0.93154 0.93368 0.91178
0.92031 0.92532 0.93183 0.92135 0.85646 0.84820 0.82770 0.90862
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.96 9.22 37.16 0.34 -1.62 16
2 C -0.14 -2.32 4.61 -26.73 -0.12 -2.44 16
3 C 0.22 3.86 0.85 -132.75 -0.11 3.75 16
4 C -0.13 -2.10 8.29 37.16 0.31 -1.79 16
5 N -0.84 -13.09 8.67 -0.19 0.00 -13.09 16
6 C -0.07 -1.55 5.71 -83.05 -0.47 -2.03 16
7 C -0.09 -2.18 11.20 -16.57 -0.19 -2.36 16
8 N -0.15 -4.30 3.78 -11.47 -0.04 -4.34 16
9 C -0.32 -8.40 10.31 -14.69 -0.15 -8.55 16
10 H 0.12 2.81 7.83 -52.49 -0.41 2.40 16
11 C 0.05 1.20 5.50 -17.52 -0.10 1.11 16
12 N -0.76 -21.12 11.89 55.49 0.66 -20.46 16
13 Si 0.94 18.57 29.55 -169.99 -5.02 13.55 16
14 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16
15 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16
16 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16
17 N -0.09 -2.83 11.73 60.35 0.71 -2.12 16
18 N -0.33 -8.92 11.61 33.16 0.38 -8.54 16
19 H 0.06 0.67 6.43 -51.93 -0.33 0.33 16
20 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16
21 H 0.05 0.54 6.76 -51.93 -0.35 0.19 16
22 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16
23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
24 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16
25 H 0.05 0.66 6.43 -51.93 -0.33 0.32 16
26 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16
27 H 0.33 4.23 7.31 -39.29 -0.29 3.94 16
28 H 0.34 5.43 8.99 -39.29 -0.35 5.08 16
29 H 0.15 3.39 8.06 -52.49 -0.42 2.96 16
30 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16
LS Contribution 255.01 15.07 3.84 3.84
Total: -1.00 -30.94 255.01 -3.70 -34.64
By element:
Atomic # 1 Polarization: 14.20 SS G_CDS: -3.74 Total: 10.46 kcal
Atomic # 6 Polarization: -13.45 SS G_CDS: -0.49 Total: -13.94 kcal
Atomic # 7 Polarization: -50.26 SS G_CDS: 1.71 Total: -48.55 kcal
Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal
Total LS contribution 3.84 Total: 3.84 kcal
Total: -30.94 -3.70 -34.64 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000600972240.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 113.576 kcal
(2) G-P(sol) polarization free energy of solvation -30.937 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.638 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.704 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.642 kcal
(6) G-S(sol) free energy of system = (1) + (5) 78.934 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds