Wall clock time and date at job start Sun Mar 29 2020 21:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46880 * 2 1 4 4 C 1.52999 * 109.47243 * 299.99727 * 3 2 1 5 5 N 1.46902 * 109.47220 * 60.00433 * 3 2 1 6 6 C 1.50706 * 109.47101 * 179.97438 * 3 2 1 7 7 C 1.34945 * 125.49011 * 185.00456 * 6 3 2 8 8 N 1.36668 * 106.72577 * 180.20717 * 7 6 3 9 9 C 1.37573 * 126.88380 * 179.77552 * 8 7 6 10 10 H 1.08000 * 119.99677 * 359.97438 * 9 8 7 11 11 C 1.39001 * 120.00084 * 179.97438 * 9 8 7 12 12 N 1.31254 * 120.00176 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00156 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47129 * 90.00189 * 13 11 9 15 15 H 1.48503 * 109.47235 * 210.00320 * 13 11 9 16 16 H 1.48498 * 109.47183 * 330.00238 * 13 11 9 17 17 N 1.40321 * 106.22714 * 359.64622 * 8 7 6 18 18 N 1.28756 * 108.03280 * 0.36116 * 17 8 7 19 19 H 1.09004 * 109.47325 * 59.99947 * 1 2 3 20 20 H 1.08996 * 109.47535 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47426 * 300.00297 * 1 2 3 22 22 H 1.08992 * 109.46875 * 240.00001 * 2 1 3 23 23 H 1.08998 * 109.46753 * 119.99715 * 2 1 3 24 24 H 1.08993 * 109.47269 * 300.00018 * 4 3 2 25 25 H 1.08994 * 109.46848 * 60.00821 * 4 3 2 26 26 H 1.09004 * 109.46743 * 180.02562 * 4 3 2 27 27 H 1.00906 * 110.99519 * 296.03932 * 5 3 2 28 28 H 1.00896 * 111.00678 * 59.99167 * 5 3 2 29 29 H 1.08002 * 126.63240 * 359.93419 * 7 6 3 30 30 H 0.97000 * 120.00647 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5300 2.1637 -1.2493 5 7 1.5503 2.1350 1.1995 6 6 3.5470 1.4426 0.0006 7 6 4.3303 2.5372 0.0967 8 7 5.6244 2.0997 0.0542 9 6 6.7601 2.8736 0.1163 10 1 6.6780 3.9465 0.2082 11 6 8.0132 2.2746 0.0607 12 7 8.1130 0.9706 -0.0506 13 14 9.5553 3.3255 0.1442 14 1 9.9692 3.4853 1.5614 15 1 10.6456 2.6661 -0.6185 16 1 9.2771 4.6604 -0.4437 17 7 5.5624 0.7027 -0.0624 18 7 4.3217 0.3600 -0.0932 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8933 -0.5138 -0.8899 23 1 1.8932 -0.5138 0.8900 24 1 1.8933 1.6500 -2.1392 25 1 0.4400 2.1638 -1.2492 26 1 1.8937 3.1913 -1.2494 27 1 0.5437 2.2051 1.1909 28 1 1.8737 1.6775 2.0386 29 1 3.9987 3.5612 0.1850 30 1 8.9874 0.5526 -0.0898 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600972240.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:46 Heat of formation + Delta-G solvation = 55.673918 kcal Electronic energy + Delta-G solvation = -13963.672936 eV Core-core repulsion = 11601.545347 eV Total energy + Delta-G solvation = -2362.127588 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.08208 -38.49738 -35.88172 -33.24547 -31.83468 -30.63569 -29.00916 -27.73289 -25.24669 -23.19602 -22.04249 -20.65598 -18.92985 -17.46796 -16.79150 -16.21352 -15.80155 -15.59956 -15.20242 -14.86707 -14.78560 -13.72250 -13.59328 -13.20098 -13.00573 -12.90609 -12.64100 -12.26355 -12.08291 -12.05149 -11.76066 -11.63940 -11.31003 -11.12550 -10.61972 -9.47708 -9.28092 -8.67521 -6.60535 1.14008 1.37305 1.57002 1.65626 2.07609 2.22995 2.80635 2.94121 3.71612 3.93400 4.10588 4.20105 4.51877 4.62757 4.66621 4.77008 4.87628 4.98261 5.04057 5.14086 5.16809 5.22136 5.31795 5.43952 5.55538 5.97892 6.00586 6.37517 6.62371 6.81439 7.22497 8.26577 8.34175 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.071817 B = 0.007690 C = 0.007300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.788333 B = 3640.103352 C = 3834.926589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.215 3.785 4 C -0.126 4.126 5 N -0.830 5.830 6 C -0.055 4.055 7 C -0.101 4.101 8 N -0.168 5.168 9 C -0.347 4.347 10 H 0.143 0.857 11 C -0.002 4.002 12 N -0.813 5.813 13 Si 1.028 2.972 14 H -0.260 1.260 15 H -0.271 1.271 16 H -0.243 1.243 17 N -0.155 5.155 18 N -0.355 5.355 19 H 0.070 0.930 20 H 0.059 0.941 21 H 0.066 0.934 22 H 0.045 0.955 23 H 0.039 0.961 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.057 0.943 27 H 0.352 0.648 28 H 0.337 0.663 29 H 0.180 0.820 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.089 5.000 0.486 10.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.120 3.880 4 C -0.184 4.184 5 N -0.362 5.362 6 C -0.204 4.204 7 C -0.255 4.255 8 N 0.059 4.941 9 C -0.483 4.483 10 H 0.160 0.840 11 C -0.216 4.216 12 N -0.441 5.441 13 Si 0.845 3.155 14 H -0.185 1.185 15 H -0.196 1.196 16 H -0.165 1.165 17 N -0.131 5.131 18 N -0.214 5.214 19 H 0.089 0.911 20 H 0.078 0.922 21 H 0.085 0.915 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.106 0.894 26 H 0.076 0.924 27 H 0.168 0.832 28 H 0.150 0.850 29 H 0.197 0.803 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.750 4.008 0.070 8.725 hybrid contribution 0.061 0.042 0.344 0.352 sum -7.689 4.050 0.414 8.700 Atomic orbital electron populations 1.21838 0.93150 1.02474 1.02839 1.21999 0.97299 0.97023 1.01095 1.18717 0.85250 0.92024 0.92004 1.21774 1.01681 1.00051 0.94939 1.58779 1.16285 1.57906 1.03259 1.21342 0.96991 0.88301 1.13755 1.22852 0.83561 1.01161 1.17951 1.47044 1.05775 1.07116 1.34126 1.20920 0.82302 0.92630 1.52420 0.84004 1.27081 1.03821 0.97456 0.93229 1.70307 1.27604 1.11669 1.34499 0.84478 0.73609 0.77966 0.79479 1.18450 1.19573 1.16541 1.82476 1.09978 0.88791 1.31856 1.73956 0.99358 1.28220 1.19869 0.91075 0.92155 0.91465 0.93630 0.94176 0.93876 0.89434 0.92416 0.83195 0.85026 0.80261 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.22 71.98 0.66 -2.57 16 2 C -0.13 -4.39 4.61 30.59 0.14 -4.25 16 3 C 0.21 7.43 0.85 2.78 0.00 7.44 16 4 C -0.13 -3.77 8.29 71.98 0.60 -3.17 16 5 N -0.83 -24.06 8.67 -154.52 -1.34 -25.40 16 6 C -0.06 -2.63 5.71 41.56 0.24 -2.39 16 7 C -0.10 -5.00 11.20 83.18 0.93 -4.07 16 8 N -0.17 -9.62 3.78 -190.22 -0.72 -10.34 16 9 C -0.35 -18.49 10.31 83.98 0.87 -17.63 16 10 H 0.14 6.59 7.83 -2.91 -0.02 6.56 16 11 C 0.00 -0.08 5.50 84.96 0.47 0.38 16 12 N -0.81 -46.21 11.89 21.66 0.26 -45.95 16 13 Si 1.03 37.40 29.55 68.60 2.03 39.42 16 14 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 15 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 16 H -0.24 -8.02 7.11 99.48 0.71 -7.31 16 17 N -0.15 -9.65 11.73 37.02 0.43 -9.21 16 18 N -0.36 -20.07 11.61 -48.99 -0.57 -20.64 16 19 H 0.07 1.39 6.43 -2.38 -0.02 1.37 16 20 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 21 H 0.07 1.24 6.76 -2.39 -0.02 1.23 16 22 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.09 1.95 6.43 -2.39 -0.02 1.94 16 26 H 0.06 1.75 8.07 -2.38 -0.02 1.73 16 27 H 0.35 7.69 7.31 -89.69 -0.66 7.04 16 28 H 0.34 10.26 8.99 -89.70 -0.81 9.45 16 29 H 0.18 7.67 8.06 -2.91 -0.02 7.64 16 30 H 0.29 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -70.09 255.01 3.70 -66.39 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: -0.30 Total: 31.99 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 3.91 Total: -26.25 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -1.94 Total: -111.55 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.42 kcal Total: -70.09 3.70 -66.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600972240.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.066 kcal (2) G-P(sol) polarization free energy of solvation -70.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds