Wall clock time and date at job start Sun Mar 29 2020 21:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47152 * 2 1 4 4 C 1.53004 * 109.46983 * 64.99618 * 3 2 1 5 5 N 1.46905 * 109.47244 * 304.99960 * 3 2 1 6 6 C 1.50695 * 109.47452 * 184.99844 * 3 2 1 7 7 C 1.34945 * 125.49018 * 119.71568 * 6 3 2 8 8 N 1.36667 * 106.73035 * 180.26996 * 7 6 3 9 9 C 1.37569 * 126.88876 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99394 * 0.02562 * 9 8 7 11 11 C 1.39009 * 120.00026 * 180.02562 * 9 8 7 12 12 N 1.31254 * 120.00034 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99896 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47104 * 60.00098 * 13 11 9 15 15 H 1.48494 * 109.47313 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46913 * 300.00241 * 13 11 9 17 17 N 1.40331 * 106.22728 * 0.02562 * 8 7 6 18 18 N 1.28756 * 108.02988 * 0.02562 * 17 8 7 19 19 H 1.08997 * 109.46945 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47370 * 300.00490 * 1 2 3 21 21 H 1.09003 * 109.46783 * 59.99874 * 1 2 3 22 22 H 1.08995 * 109.47170 * 240.00163 * 2 1 3 23 23 H 1.08994 * 109.46609 * 120.00102 * 2 1 3 24 24 H 1.09003 * 109.47004 * 179.97438 * 4 3 2 25 25 H 1.08996 * 109.47433 * 300.00103 * 4 3 2 26 26 H 1.09003 * 109.47160 * 60.00184 * 4 3 2 27 27 H 1.00902 * 110.99482 * 176.04557 * 5 3 2 28 28 H 1.00892 * 110.99840 * 299.99834 * 5 3 2 29 29 H 1.07996 * 126.63325 * 0.24571 * 7 6 3 30 30 H 0.97002 * 119.99679 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6352 2.1265 1.3073 5 7 1.4543 2.1690 -1.1346 6 6 3.5419 1.4443 -0.1238 7 6 4.2449 2.0175 -1.1229 8 7 5.5655 1.7849 -0.8585 9 6 6.6424 2.1891 -1.6131 10 1 6.4846 2.7532 -2.5205 11 6 7.9335 1.8713 -1.2078 12 7 8.1252 1.1852 -0.1054 13 14 9.3959 2.4207 -2.2322 14 1 9.4044 3.9026 -2.3279 15 1 10.6521 1.9585 -1.5894 16 1 9.2934 1.8373 -3.5940 17 7 5.6027 1.0513 0.3372 18 7 4.3906 0.8731 0.7333 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.9989 3.1541 1.3075 25 1 0.5489 2.1252 1.3969 26 1 2.0698 1.5875 2.1492 27 1 1.7248 3.1410 -1.1199 28 1 1.7073 1.7364 -2.0103 29 1 3.8420 2.5554 -1.9682 30 1 9.0262 0.9638 0.1776 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600972241.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:48 Heat of formation + Delta-G solvation = 76.232694 kcal Electronic energy + Delta-G solvation = -13976.030217 eV Core-core repulsion = 11614.794124 eV Total energy + Delta-G solvation = -2361.236093 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.24839 -36.85434 -34.02131 -31.37527 -30.84685 -28.50855 -27.84667 -25.68976 -23.71788 -21.24796 -20.45250 -18.86341 -17.43042 -15.60039 -15.39201 -14.92604 -14.40277 -13.90149 -13.76756 -13.15660 -12.66708 -12.16085 -11.89226 -11.68533 -11.52002 -11.39042 -11.27474 -10.90970 -10.66160 -10.41656 -10.24539 -9.85593 -9.82430 -9.20932 -8.71791 -8.26299 -7.41679 -6.85076 -4.65856 2.80597 2.92408 2.97534 3.29930 3.66059 4.09645 4.60988 4.77800 5.05241 5.48733 5.51483 5.69197 5.96732 6.05432 6.15071 6.19078 6.33381 6.47755 6.50197 6.58179 6.71545 6.77128 6.85921 6.92698 7.06736 7.64285 7.77929 7.87608 7.90718 8.48143 9.08996 10.11778 10.20356 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.067742 B = 0.007735 C = 0.007417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.232660 B = 3619.042167 C = 3774.371240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 C 0.213 3.787 4 C -0.128 4.128 5 N -0.832 5.832 6 C -0.096 4.096 7 C -0.125 4.125 8 N -0.146 5.146 9 C -0.316 4.316 10 H 0.119 0.881 11 C 0.047 3.953 12 N -0.759 5.759 13 Si 0.942 3.058 14 H -0.264 1.264 15 H -0.273 1.273 16 H -0.264 1.264 17 N -0.094 5.094 18 N -0.321 5.321 19 H 0.038 0.962 20 H 0.050 0.950 21 H 0.063 0.937 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.337 0.663 28 H 0.337 0.663 29 H 0.149 0.851 30 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.654 1.991 -3.298 7.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.139 4.139 3 C 0.118 3.882 4 C -0.186 4.186 5 N -0.360 5.360 6 C -0.246 4.246 7 C -0.279 4.279 8 N 0.083 4.917 9 C -0.453 4.453 10 H 0.136 0.864 11 C -0.173 4.173 12 N -0.386 5.386 13 Si 0.765 3.235 14 H -0.188 1.188 15 H -0.198 1.198 16 H -0.188 1.188 17 N -0.071 5.071 18 N -0.180 5.180 19 H 0.057 0.943 20 H 0.069 0.931 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.166 0.834 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.289 0.939 -1.671 6.574 hybrid contribution 1.333 1.028 -1.712 2.401 sum -4.955 1.967 -3.384 6.315 Atomic orbital electron populations 1.21704 0.95916 0.99882 1.02285 1.21438 0.95264 0.95227 1.01934 1.18729 0.85045 0.93483 0.90957 1.21759 1.00308 0.99973 0.96549 1.59182 1.64969 1.06443 1.05430 1.21638 0.96733 1.09233 0.96970 1.22151 0.85116 1.15441 1.05173 1.46687 1.03945 1.26428 1.14622 1.20091 0.83245 1.35528 1.06420 0.86351 1.25781 0.99826 0.95248 0.96422 1.70137 1.24079 1.26221 1.18130 0.85761 0.78605 0.79646 0.79483 1.18822 1.19776 1.18826 1.82548 1.10524 1.17375 0.96686 1.73957 0.98210 1.20448 1.25426 0.94258 0.93096 0.91815 0.92862 0.91565 0.93525 0.92490 0.91991 0.85123 0.85075 0.83405 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.46 37.16 0.35 -1.61 16 2 C -0.10 -1.71 5.11 -26.73 -0.14 -1.85 16 3 C 0.21 3.83 0.88 -132.75 -0.12 3.71 16 4 C -0.13 -2.18 8.47 37.16 0.31 -1.86 16 5 N -0.83 -12.54 7.33 -0.19 0.00 -12.54 16 6 C -0.10 -2.22 5.56 -83.05 -0.46 -2.68 16 7 C -0.12 -2.94 10.54 -16.57 -0.17 -3.11 16 8 N -0.15 -3.99 3.78 -11.48 -0.04 -4.03 16 9 C -0.32 -8.19 10.31 -14.69 -0.15 -8.34 16 10 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 11 C 0.05 1.18 5.50 -17.51 -0.10 1.08 16 12 N -0.76 -20.67 11.89 55.50 0.66 -20.01 16 13 Si 0.94 18.14 29.55 -169.99 -5.02 13.12 16 14 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 15 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 16 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 17 N -0.09 -2.80 11.73 60.35 0.71 -2.09 16 18 N -0.32 -8.70 12.33 33.16 0.41 -8.29 16 19 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 20 H 0.05 0.68 6.56 -51.93 -0.34 0.34 16 21 H 0.06 0.87 7.47 -51.93 -0.39 0.48 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.84 6.56 -51.93 -0.34 0.50 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.34 4.86 8.73 -39.29 -0.34 4.52 16 28 H 0.34 4.92 8.51 -39.30 -0.33 4.58 16 29 H 0.15 2.91 7.53 -52.49 -0.40 2.52 16 30 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 255.97 15.07 3.86 3.86 Total: -1.00 -30.40 255.97 -3.71 -34.11 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -3.80 Total: 10.53 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -0.47 Total: -14.66 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 1.73 Total: -46.96 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.02 Total: 13.12 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.40 -3.71 -34.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600972241.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.338 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds