Wall clock time and date at job start Sun Mar 29 2020 21:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47152 * 2 1 4 4 C 1.53004 * 109.46983 * 64.99618 * 3 2 1 5 5 N 1.46905 * 109.47244 * 304.99960 * 3 2 1 6 6 C 1.50695 * 109.47452 * 184.99844 * 3 2 1 7 7 C 1.34945 * 125.49018 * 119.71568 * 6 3 2 8 8 N 1.36667 * 106.73035 * 180.26996 * 7 6 3 9 9 C 1.37569 * 126.88876 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99394 * 0.02562 * 9 8 7 11 11 C 1.39009 * 120.00026 * 180.02562 * 9 8 7 12 12 N 1.31254 * 120.00034 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99896 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47104 * 60.00098 * 13 11 9 15 15 H 1.48494 * 109.47313 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46913 * 300.00241 * 13 11 9 17 17 N 1.40331 * 106.22728 * 0.02562 * 8 7 6 18 18 N 1.28756 * 108.02988 * 0.02562 * 17 8 7 19 19 H 1.08997 * 109.46945 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47370 * 300.00490 * 1 2 3 21 21 H 1.09003 * 109.46783 * 59.99874 * 1 2 3 22 22 H 1.08995 * 109.47170 * 240.00163 * 2 1 3 23 23 H 1.08994 * 109.46609 * 120.00102 * 2 1 3 24 24 H 1.09003 * 109.47004 * 179.97438 * 4 3 2 25 25 H 1.08996 * 109.47433 * 300.00103 * 4 3 2 26 26 H 1.09003 * 109.47160 * 60.00184 * 4 3 2 27 27 H 1.00902 * 110.99482 * 176.04557 * 5 3 2 28 28 H 1.00892 * 110.99840 * 299.99834 * 5 3 2 29 29 H 1.07996 * 126.63325 * 0.24571 * 7 6 3 30 30 H 0.97002 * 119.99679 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6352 2.1265 1.3073 5 7 1.4543 2.1690 -1.1346 6 6 3.5419 1.4443 -0.1238 7 6 4.2449 2.0175 -1.1229 8 7 5.5655 1.7849 -0.8585 9 6 6.6424 2.1891 -1.6131 10 1 6.4846 2.7532 -2.5205 11 6 7.9335 1.8713 -1.2078 12 7 8.1252 1.1852 -0.1054 13 14 9.3959 2.4207 -2.2322 14 1 9.4044 3.9026 -2.3279 15 1 10.6521 1.9585 -1.5894 16 1 9.2934 1.8373 -3.5940 17 7 5.6027 1.0513 0.3372 18 7 4.3906 0.8731 0.7333 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.9989 3.1541 1.3075 25 1 0.5489 2.1252 1.3969 26 1 2.0698 1.5875 2.1492 27 1 1.7248 3.1410 -1.1199 28 1 1.7073 1.7364 -2.0103 29 1 3.8420 2.5554 -1.9682 30 1 9.0262 0.9638 0.1776 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600972241.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:48 Heat of formation + Delta-G solvation = 53.703261 kcal Electronic energy + Delta-G solvation = -13977.007167 eV Core-core repulsion = 11614.794124 eV Total energy + Delta-G solvation = -2362.213042 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.15686 -38.33306 -35.91816 -33.33046 -32.18403 -30.13695 -29.39407 -27.58934 -25.11896 -23.22968 -22.14649 -20.57889 -19.15041 -17.52502 -16.76336 -16.46747 -15.80929 -15.70181 -15.47806 -14.88727 -13.98691 -13.76321 -13.45692 -13.34667 -12.99811 -12.92370 -12.65527 -12.30719 -12.12889 -11.93168 -11.84498 -11.56320 -11.39976 -11.09520 -10.66428 -9.64928 -9.33382 -8.72357 -6.66318 1.08521 1.34816 1.53585 1.62411 2.04262 2.20023 2.75310 2.89195 3.70404 3.97431 4.14524 4.24226 4.40747 4.63936 4.72887 4.81676 4.83121 4.98207 5.02556 5.13070 5.22528 5.23821 5.34419 5.52789 5.65197 5.92415 5.96770 6.29893 6.58144 6.69026 7.15729 8.21806 8.28785 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.067742 B = 0.007735 C = 0.007417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.232660 B = 3619.042167 C = 3774.371240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.098 4.098 3 C 0.214 3.786 4 C -0.123 4.123 5 N -0.814 5.814 6 C -0.088 4.088 7 C -0.132 4.132 8 N -0.163 5.163 9 C -0.346 4.346 10 H 0.145 0.855 11 C -0.002 4.002 12 N -0.810 5.810 13 Si 1.028 2.972 14 H -0.250 1.250 15 H -0.272 1.272 16 H -0.250 1.250 17 N -0.156 5.156 18 N -0.353 5.353 19 H 0.052 0.948 20 H 0.058 0.942 21 H 0.071 0.929 22 H 0.041 0.959 23 H 0.045 0.955 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.042 0.958 27 H 0.344 0.656 28 H 0.343 0.657 29 H 0.186 0.814 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.551 3.133 -5.083 9.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.137 4.137 3 C 0.119 3.881 4 C -0.181 4.181 5 N -0.343 5.343 6 C -0.238 4.238 7 C -0.285 4.285 8 N 0.065 4.935 9 C -0.482 4.482 10 H 0.163 0.837 11 C -0.217 4.217 12 N -0.437 5.437 13 Si 0.845 3.155 14 H -0.173 1.173 15 H -0.197 1.197 16 H -0.174 1.174 17 N -0.132 5.132 18 N -0.211 5.211 19 H 0.071 0.929 20 H 0.077 0.923 21 H 0.090 0.910 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.157 0.843 28 H 0.156 0.844 29 H 0.203 0.797 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.223 2.078 -3.445 8.268 hybrid contribution 1.513 0.684 -1.178 2.036 sum -5.710 2.762 -4.623 7.848 Atomic orbital electron populations 1.21624 0.92929 1.01149 1.03001 1.21389 0.97739 0.94129 1.00400 1.18858 0.81932 0.94719 0.92623 1.21706 1.01994 0.99178 0.95197 1.59147 1.63768 1.06615 1.04744 1.22612 0.99008 1.06746 0.95481 1.22894 0.84109 1.15228 1.06264 1.47039 1.05554 1.26410 1.14461 1.20942 0.83750 1.36132 1.07365 0.83723 1.27112 1.02938 0.94326 0.97292 1.70303 1.25120 1.27838 1.20484 0.84528 0.73626 0.79705 0.77658 1.17336 1.19689 1.17364 1.82505 1.11804 1.20211 0.98720 1.73919 0.98454 1.21876 1.26820 0.92852 0.92264 0.91048 0.94057 0.93580 0.93876 0.89608 0.93883 0.84307 0.84399 0.79678 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 9.46 71.98 0.68 -2.59 16 2 C -0.10 -3.25 5.11 30.60 0.16 -3.09 16 3 C 0.21 7.42 0.88 2.78 0.00 7.42 16 4 C -0.12 -4.01 8.47 71.98 0.61 -3.40 16 5 N -0.81 -22.24 7.33 -154.52 -1.13 -23.38 16 6 C -0.09 -4.03 5.56 41.55 0.23 -3.80 16 7 C -0.13 -6.11 10.54 83.18 0.88 -5.23 16 8 N -0.16 -9.01 3.78 -190.22 -0.72 -9.73 16 9 C -0.35 -17.85 10.31 83.98 0.87 -16.98 16 10 H 0.15 6.39 7.83 -2.91 -0.02 6.37 16 11 C 0.00 -0.09 5.50 84.96 0.47 0.38 16 12 N -0.81 -45.32 11.89 21.66 0.26 -45.07 16 13 Si 1.03 36.34 29.55 68.60 2.03 38.37 16 14 H -0.25 -8.21 7.11 99.48 0.71 -7.50 16 15 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 16 H -0.25 -8.23 7.11 99.48 0.71 -7.52 16 17 N -0.16 -9.60 11.73 37.02 0.43 -9.17 16 18 N -0.35 -19.72 12.33 -48.99 -0.60 -20.32 16 19 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 20 H 0.06 1.40 6.56 -2.39 -0.02 1.38 16 21 H 0.07 1.71 7.47 -2.39 -0.02 1.69 16 22 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 25 H 0.09 2.30 6.56 -2.39 -0.02 2.28 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.34 8.86 8.73 -89.69 -0.78 8.08 16 28 H 0.34 8.99 8.51 -89.70 -0.76 8.23 16 29 H 0.19 6.86 7.53 -2.91 -0.02 6.83 16 30 H 0.29 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -68.26 255.97 3.77 -64.49 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: -0.39 Total: 32.11 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: 3.89 Total: -27.30 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -1.76 Total: -107.67 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Total: -68.26 3.77 -64.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600972241.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.194 kcal (2) G-P(sol) polarization free energy of solvation -68.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds