Wall clock time and date at job start Sun Mar 29 2020 22:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45194 * 109.47234 * 2 1 4 4 C 1.34770 * 116.99940 * 179.97438 * 3 2 1 5 5 O 1.21526 * 119.99679 * 0.02562 * 4 3 2 6 6 C 1.47353 * 119.99786 * 180.02562 * 4 3 2 7 7 C 1.36673 * 125.76660 * 180.33803 * 6 4 3 8 8 N 1.35502 * 106.72324 * 180.15467 * 7 6 4 9 9 C 1.37508 * 126.63064 * 179.85203 * 8 7 6 10 10 H 1.07995 * 120.00565 * 5.50104 * 9 8 7 11 11 C 1.39061 * 119.99604 * 185.22972 * 9 8 7 12 12 N 1.31222 * 120.00099 * 354.40468 * 11 9 8 13 13 Si 1.86800 * 119.99808 * 174.39974 * 11 9 8 14 14 H 1.48496 * 109.46949 * 94.97993 * 13 11 9 15 15 H 1.48505 * 109.47092 * 214.98105 * 13 11 9 16 16 H 1.48507 * 109.47245 * 334.98156 * 13 11 9 17 17 N 1.40216 * 106.73444 * 359.58788 * 8 7 6 18 18 N 1.28734 * 108.42996 * 0.26330 * 17 8 7 19 19 H 1.09003 * 109.46575 * 299.99121 * 1 2 3 20 20 H 1.08997 * 109.47433 * 59.99375 * 1 2 3 21 21 H 1.09002 * 109.47203 * 179.97438 * 1 2 3 22 22 H 1.09012 * 109.46652 * 240.00262 * 2 1 3 23 23 H 1.08999 * 109.47136 * 120.01069 * 2 1 3 24 24 H 1.07999 * 126.63964 * 0.02562 * 7 6 4 25 25 H 0.97000 * 120.00076 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3501 1.5454 0.0005 5 8 4.0903 0.5816 0.0005 6 6 3.9133 2.9071 0.0011 7 6 5.2434 3.2214 -0.0048 8 7 5.3244 4.5740 0.0017 9 6 6.4750 5.3270 0.0019 10 1 7.4364 4.8443 -0.0932 11 6 6.4003 6.7107 0.1189 12 7 5.2315 7.3070 0.1185 13 14 7.9640 7.7204 0.2766 14 1 8.3741 8.2103 -1.0639 15 1 7.7171 8.8785 1.1728 16 1 9.0438 6.8749 0.8464 17 7 4.0082 5.0573 0.0021 18 7 3.2052 4.0511 0.0017 19 1 -0.3632 0.5137 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5139 -0.8901 23 1 1.8933 -0.5140 0.8899 24 1 6.0699 2.5263 -0.0112 25 1 5.1793 8.2722 0.2005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600972988.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:23 Heat of formation + Delta-G solvation = -4.382454 kcal Electronic energy + Delta-G solvation = -13324.886340 eV Core-core repulsion = 10726.602756 eV Total energy + Delta-G solvation = -2598.283585 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.51361 -39.29802 -35.87962 -34.37136 -31.78092 -31.34824 -29.33718 -26.13433 -23.72837 -22.01057 -21.48604 -19.83441 -18.54586 -16.47021 -16.02059 -15.82550 -15.56094 -14.28465 -14.26241 -13.41245 -13.27425 -13.06111 -12.55984 -12.09537 -11.72266 -11.64061 -11.47788 -11.29806 -10.73634 -10.48229 -10.21572 -10.10115 -9.68815 -9.57806 -8.98587 -7.86018 -7.03434 -4.87505 2.31500 2.78152 2.86041 2.94387 3.21320 3.24167 3.58309 4.24338 4.38457 4.61572 5.14517 5.19673 5.40484 5.48121 5.84069 5.95947 6.11167 6.19176 6.36880 6.55448 6.75183 6.97007 7.29237 7.66471 8.22666 8.51359 8.80990 9.78510 9.93704 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.089095 B = 0.006689 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 314.195707 B = 4184.668892 C = 4475.427175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.345 6.345 4 C 0.566 3.434 5 O -0.537 6.537 6 C -0.121 4.121 7 C -0.056 4.056 8 N -0.140 5.140 9 C -0.311 4.311 10 H 0.129 0.871 11 C 0.047 3.953 12 N -0.751 5.751 13 Si 0.948 3.052 14 H -0.266 1.266 15 H -0.270 1.270 16 H -0.258 1.258 17 N -0.077 5.077 18 N -0.263 5.263 19 H 0.066 0.934 20 H 0.066 0.934 21 H 0.074 0.926 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.173 0.827 25 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.869 -5.592 0.121 5.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 O -0.261 6.261 4 C 0.411 3.589 5 O -0.426 6.426 6 C -0.265 4.265 7 C -0.215 4.215 8 N 0.095 4.905 9 C -0.447 4.447 10 H 0.147 0.853 11 C -0.174 4.174 12 N -0.375 5.375 13 Si 0.770 3.230 14 H -0.191 1.191 15 H -0.195 1.195 16 H -0.182 1.182 17 N -0.057 5.057 18 N -0.130 5.130 19 H 0.085 0.915 20 H 0.085 0.915 21 H 0.092 0.908 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.190 0.810 25 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.813 -4.445 0.137 4.803 hybrid contribution 1.454 -0.547 0.044 1.554 sum -0.360 -4.992 0.181 5.008 Atomic orbital electron populations 1.21773 0.93119 1.02254 1.03603 1.22903 0.95038 0.81377 1.02044 1.86691 1.24350 1.30609 1.84484 1.19831 0.79727 0.87961 0.71336 1.90748 1.60583 1.41955 1.49340 1.19453 0.90607 0.90607 1.25793 1.22294 0.97261 0.85974 1.15972 1.46426 1.08252 1.03495 1.32348 1.20369 0.83799 0.89464 1.51063 0.85334 1.25898 0.99759 0.97275 0.94481 1.70115 1.24460 1.11974 1.30987 0.85583 0.79129 0.78995 0.79296 1.19066 1.19510 1.18154 1.82594 0.81923 1.13644 1.27530 1.74541 1.27997 0.96829 1.13617 0.91532 0.91536 0.90767 0.91702 0.91699 0.81016 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.29 37.16 0.38 -1.35 15 2 C 0.06 0.92 6.20 37.16 0.23 1.15 15 3 O -0.35 -7.03 10.23 -40.68 -0.42 -7.44 15 4 C 0.57 12.86 7.96 34.44 0.27 13.13 15 5 O -0.54 -12.28 16.65 -19.29 -0.32 -12.61 15 6 C -0.12 -3.05 7.02 -83.53 -0.59 -3.64 15 7 C -0.06 -1.37 11.25 -16.50 -0.19 -1.56 15 8 N -0.14 -3.74 3.73 -11.35 -0.04 -3.79 15 9 C -0.31 -7.65 10.27 -14.70 -0.15 -7.80 15 10 H 0.13 2.76 7.84 -52.49 -0.41 2.35 15 11 C 0.05 1.12 5.50 -17.51 -0.10 1.02 15 12 N -0.75 -19.27 11.89 55.50 0.66 -18.61 15 13 Si 0.95 17.10 29.56 -169.99 -5.02 12.07 15 14 H -0.27 -4.71 7.11 56.52 0.40 -4.31 15 15 H -0.27 -4.84 7.11 56.52 0.40 -4.43 15 16 H -0.26 -4.45 7.11 56.52 0.40 -4.05 15 17 N -0.08 -2.23 11.69 60.35 0.71 -1.52 15 18 N -0.26 -7.25 12.39 32.85 0.41 -6.84 15 19 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 21 H 0.07 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.06 0.93 8.14 -51.92 -0.42 0.51 15 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 24 H 0.17 3.65 8.06 -52.49 -0.42 3.22 15 25 H 0.29 6.61 8.30 -40.82 -0.34 6.27 15 LS Contribution 240.85 15.07 3.63 3.63 Total: -1.00 -30.57 240.85 -2.62 -33.18 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -2.08 Total: 0.97 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -0.13 Total: 0.95 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 1.73 Total: -30.76 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.74 Total: -20.05 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.02 Total: 12.07 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.57 -2.62 -33.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600972988.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.801 kcal (2) G-P(sol) polarization free energy of solvation -30.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds