Wall clock time and date at job start Sun Mar 29 2020 22:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45194 * 109.47234 * 2 1 4 4 C 1.34770 * 116.99940 * 179.97438 * 3 2 1 5 5 O 1.21526 * 119.99679 * 0.02562 * 4 3 2 6 6 C 1.47353 * 119.99786 * 180.02562 * 4 3 2 7 7 C 1.36673 * 125.76660 * 180.33803 * 6 4 3 8 8 N 1.35502 * 106.72324 * 180.15467 * 7 6 4 9 9 C 1.37508 * 126.63064 * 179.85203 * 8 7 6 10 10 H 1.07995 * 120.00565 * 5.50104 * 9 8 7 11 11 C 1.39061 * 119.99604 * 185.22972 * 9 8 7 12 12 N 1.31222 * 120.00099 * 354.40468 * 11 9 8 13 13 Si 1.86800 * 119.99808 * 174.39974 * 11 9 8 14 14 H 1.48496 * 109.46949 * 94.97993 * 13 11 9 15 15 H 1.48505 * 109.47092 * 214.98105 * 13 11 9 16 16 H 1.48507 * 109.47245 * 334.98156 * 13 11 9 17 17 N 1.40216 * 106.73444 * 359.58788 * 8 7 6 18 18 N 1.28734 * 108.42996 * 0.26330 * 17 8 7 19 19 H 1.09003 * 109.46575 * 299.99121 * 1 2 3 20 20 H 1.08997 * 109.47433 * 59.99375 * 1 2 3 21 21 H 1.09002 * 109.47203 * 179.97438 * 1 2 3 22 22 H 1.09012 * 109.46652 * 240.00262 * 2 1 3 23 23 H 1.08999 * 109.47136 * 120.01069 * 2 1 3 24 24 H 1.07999 * 126.63964 * 0.02562 * 7 6 4 25 25 H 0.97000 * 120.00076 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3501 1.5454 0.0005 5 8 4.0903 0.5816 0.0005 6 6 3.9133 2.9071 0.0011 7 6 5.2434 3.2214 -0.0048 8 7 5.3244 4.5740 0.0017 9 6 6.4750 5.3270 0.0019 10 1 7.4364 4.8443 -0.0932 11 6 6.4003 6.7107 0.1189 12 7 5.2315 7.3070 0.1185 13 14 7.9640 7.7204 0.2766 14 1 8.3741 8.2103 -1.0639 15 1 7.7171 8.8785 1.1728 16 1 9.0438 6.8749 0.8464 17 7 4.0082 5.0573 0.0021 18 7 3.2052 4.0511 0.0017 19 1 -0.3632 0.5137 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5139 -0.8901 23 1 1.8933 -0.5140 0.8899 24 1 6.0699 2.5263 -0.0112 25 1 5.1793 8.2722 0.2005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600972988.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:23 Heat of formation + Delta-G solvation = -24.960525 kcal Electronic energy + Delta-G solvation = -13325.778672 eV Core-core repulsion = 10726.602756 eV Total energy + Delta-G solvation = -2599.175917 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.44327 -40.99667 -37.51784 -36.25083 -33.65979 -32.61533 -31.20700 -28.02016 -25.30131 -23.60610 -23.25984 -21.68207 -20.35284 -18.16383 -17.67013 -17.54545 -17.26870 -16.11875 -15.86749 -15.11088 -14.89290 -14.55509 -13.85611 -13.54459 -13.46740 -13.10850 -12.86463 -12.53014 -12.33600 -12.08003 -11.98028 -11.63397 -11.47072 -11.44730 -10.84646 -9.83580 -8.83018 -6.80729 0.49594 1.02548 1.37009 1.58647 1.62830 1.69673 2.05531 2.33935 2.55042 2.81313 3.74604 4.05322 4.13121 4.29006 4.37506 4.49507 4.63201 4.87967 4.93750 4.95291 5.13668 5.36308 5.45378 5.81033 6.37862 6.77559 6.92215 7.79375 8.17437 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.089095 B = 0.006689 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 314.195707 B = 4184.668892 C = 4475.427175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.357 6.357 4 C 0.571 3.429 5 O -0.540 6.540 6 C -0.128 4.128 7 C -0.068 4.068 8 N -0.149 5.149 9 C -0.331 4.331 10 H 0.159 0.841 11 C 0.002 3.998 12 N -0.795 5.795 13 Si 1.033 2.967 14 H -0.258 1.258 15 H -0.269 1.269 16 H -0.240 1.240 17 N -0.127 5.127 18 N -0.289 5.289 19 H 0.064 0.936 20 H 0.064 0.936 21 H 0.110 0.890 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.202 0.798 25 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.397 -6.134 0.214 6.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.273 6.273 4 C 0.416 3.584 5 O -0.430 6.430 6 C -0.274 4.274 7 C -0.226 4.226 8 N 0.085 4.915 9 C -0.467 4.467 10 H 0.176 0.824 11 C -0.215 4.215 12 N -0.421 5.421 13 Si 0.850 3.150 14 H -0.182 1.182 15 H -0.194 1.194 16 H -0.162 1.162 17 N -0.105 5.105 18 N -0.154 5.154 19 H 0.083 0.917 20 H 0.083 0.917 21 H 0.129 0.871 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.219 0.781 25 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.607 -5.025 0.226 5.067 hybrid contribution 1.023 -0.452 0.006 1.118 sum 0.416 -5.477 0.233 5.498 Atomic orbital electron populations 1.21825 0.90254 1.04570 1.03415 1.23411 0.97277 0.78848 1.02889 1.86672 1.22752 1.34064 1.83794 1.19490 0.80670 0.86928 0.71279 1.90728 1.60997 1.41718 1.49585 1.20014 0.91189 0.91386 1.24765 1.22810 0.98002 0.85771 1.16029 1.46753 1.08276 1.04451 1.32046 1.21337 0.84328 0.90495 1.50580 0.82404 1.27242 1.03505 0.97999 0.92800 1.70241 1.27499 1.12908 1.31415 0.84371 0.74291 0.76860 0.79521 1.18227 1.19388 1.16228 1.82522 0.83089 1.14534 1.30377 1.74472 1.28566 0.97503 1.14837 0.91731 0.91727 0.87111 0.90862 0.90871 0.78088 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 10.29 71.98 0.74 -2.26 15 2 C 0.05 1.40 6.20 71.98 0.45 1.84 15 3 O -0.36 -14.38 10.23 -56.80 -0.58 -14.96 15 4 C 0.57 25.83 7.96 70.22 0.56 26.39 15 5 O -0.54 -24.18 16.65 19.75 0.33 -23.85 15 6 C -0.13 -6.55 7.02 40.76 0.29 -6.26 15 7 C -0.07 -3.35 11.25 83.76 0.94 -2.41 15 8 N -0.15 -8.07 3.73 -189.81 -0.71 -8.78 15 9 C -0.33 -16.05 10.27 84.00 0.86 -15.19 15 10 H 0.16 6.44 7.84 -2.91 -0.02 6.42 15 11 C 0.00 0.08 5.50 84.98 0.47 0.55 15 12 N -0.80 -41.25 11.89 21.67 0.26 -40.99 15 13 Si 1.03 33.39 29.56 68.60 2.03 35.42 15 14 H -0.26 -7.99 7.11 99.48 0.71 -7.28 15 15 H -0.27 -8.59 7.11 99.48 0.71 -7.88 15 16 H -0.24 -7.01 7.11 99.48 0.71 -6.30 15 17 N -0.13 -7.51 11.69 37.02 0.43 -7.08 15 18 N -0.29 -16.37 12.39 -50.00 -0.62 -16.99 15 19 H 0.06 1.38 8.14 -2.39 -0.02 1.36 15 20 H 0.06 1.38 8.14 -2.39 -0.02 1.36 15 21 H 0.11 1.53 8.14 -2.39 -0.02 1.51 15 22 H 0.07 1.97 8.14 -2.38 -0.02 1.95 15 23 H 0.07 1.97 8.14 -2.39 -0.02 1.95 15 24 H 0.20 8.31 8.06 -2.91 -0.02 8.29 15 25 H 0.30 13.69 8.30 -92.71 -0.77 12.92 15 Total: -1.00 -66.93 240.85 6.65 -60.28 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 1.21 Total: 14.29 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 4.30 Total: 2.66 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -0.64 Total: -73.84 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -0.25 Total: -38.82 kcal Atomic # 14 Polarization: 33.39 SS G_CDS: 2.03 Total: 35.42 kcal Total: -66.93 6.65 -60.28 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600972988.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.322 kcal (2) G-P(sol) polarization free energy of solvation -66.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds