Wall clock time and date at job start Sun Mar 29 2020 21:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47343 * 2 1 4 4 C 1.53002 * 109.46891 * 120.00400 * 2 1 3 5 5 H 1.09004 * 109.47006 * 299.99770 * 4 2 1 6 6 N 1.46906 * 109.47053 * 179.97438 * 4 2 1 7 7 C 1.50699 * 109.47389 * 59.99839 * 4 2 1 8 8 C 1.34941 * 125.48716 * 124.71978 * 7 4 2 9 9 N 1.36667 * 106.72983 * 179.84511 * 8 7 4 10 10 C 1.37562 * 126.89072 * 180.14851 * 9 8 7 11 11 H 1.08004 * 119.99814 * 0.33349 * 10 9 8 12 12 C 1.39012 * 120.00195 * 180.33224 * 10 9 8 13 13 N 1.31248 * 120.00179 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99975 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47309 * 59.99829 * 14 12 10 16 16 H 1.48500 * 109.47076 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47149 * 299.99524 * 14 12 10 18 18 N 1.40333 * 106.22356 * 0.40609 * 9 8 7 19 19 N 1.28753 * 108.02947 * 359.74291 * 18 9 8 20 20 H 1.08996 * 109.47261 * 300.00175 * 1 2 3 21 21 H 1.09004 * 109.47368 * 59.99791 * 1 2 3 22 22 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47108 * 240.00108 * 2 1 3 24 24 H 1.09002 * 109.47067 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47312 * 299.99943 * 3 2 1 26 26 H 1.09004 * 109.46930 * 59.99999 * 3 2 1 27 27 H 1.00900 * 110.99554 * 176.04406 * 6 4 2 28 28 H 1.00900 * 110.99744 * 299.99884 * 6 4 2 29 29 H 1.08007 * 126.63807 * 0.02562 * 8 7 4 30 30 H 0.97000 * 120.00301 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7214 1.2492 5 1 1.6766 -0.2075 2.1393 6 7 3.5090 -0.7219 1.2490 7 6 1.5376 -2.1421 1.2492 8 6 2.3088 -3.2457 1.3396 9 7 1.4642 -4.3197 1.3069 10 6 1.8147 -5.6482 1.3749 11 1 2.8534 -5.9285 1.4696 12 6 0.8319 -6.6299 1.3216 13 7 -0.4303 -6.2893 1.2060 14 14 1.3078 -8.4339 1.4147 15 1 2.0074 -8.6958 2.6981 16 1 0.0851 -9.2730 1.3365 17 1 2.2093 -8.7670 0.2825 18 7 0.1682 -3.7957 1.1841 19 7 0.2587 -2.5117 1.1540 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.8705 -1.1356 2.0953 28 1 3.8702 -1.1931 0.4331 29 1 3.3851 -3.2747 1.4246 30 1 -1.1161 -6.9744 1.1693 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600973845.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:55 Heat of formation + Delta-G solvation = 78.260138 kcal Electronic energy + Delta-G solvation = -13944.985367 eV Core-core repulsion = 11583.837190 eV Total energy + Delta-G solvation = -2361.148176 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.25265 -36.62205 -34.03298 -32.07058 -31.31203 -28.43484 -26.58531 -25.63861 -23.91490 -21.26469 -20.17342 -19.15488 -17.66503 -15.61890 -15.43280 -14.75364 -14.48554 -13.87616 -13.64688 -13.35143 -12.66080 -12.08411 -12.04199 -11.58607 -11.56924 -11.39026 -11.34028 -10.71325 -10.62692 -10.37335 -10.20724 -9.87671 -9.76241 -9.04374 -8.70740 -8.28415 -7.41937 -6.86050 -4.66768 2.79876 2.91979 2.97063 3.28867 3.65379 4.05406 4.60359 4.76819 5.07766 5.44287 5.56491 5.71736 6.08793 6.13347 6.17848 6.21751 6.31493 6.42374 6.57037 6.63407 6.71678 6.84345 6.93273 7.07561 7.21918 7.59509 7.78805 7.87315 7.89651 8.47381 9.07751 10.10635 10.18251 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.065105 B = 0.007878 C = 0.007224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.973669 B = 3553.353755 C = 3875.122159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.076 4.076 3 C -0.135 4.135 4 C 0.192 3.808 5 H 0.075 0.925 6 N -0.837 5.837 7 C -0.103 4.103 8 C -0.124 4.124 9 N -0.145 5.145 10 C -0.316 4.316 11 H 0.119 0.881 12 C 0.047 3.953 13 N -0.759 5.759 14 Si 0.942 3.058 15 H -0.264 1.264 16 H -0.273 1.273 17 H -0.264 1.264 18 N -0.096 5.096 19 N -0.318 5.318 20 H 0.045 0.955 21 H 0.037 0.963 22 H 0.095 0.905 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.337 0.663 28 H 0.337 0.663 29 H 0.149 0.851 30 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.602 4.126 -0.751 6.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.096 4.096 3 C -0.193 4.193 4 C 0.078 3.922 5 H 0.093 0.907 6 N -0.364 5.364 7 C -0.252 4.252 8 C -0.278 4.278 9 N 0.084 4.916 10 C -0.453 4.453 11 H 0.137 0.863 12 C -0.173 4.173 13 N -0.385 5.385 14 Si 0.765 3.235 15 H -0.188 1.188 16 H -0.198 1.198 17 H -0.188 1.188 18 N -0.073 5.073 19 N -0.177 5.177 20 H 0.064 0.936 21 H 0.056 0.944 22 H 0.113 0.887 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.166 0.834 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.701 4.563 -0.906 5.945 hybrid contribution 1.305 -1.908 0.201 2.321 sum 5.006 2.655 -0.705 5.710 Atomic orbital electron populations 1.22042 0.94689 1.05017 0.99606 1.20950 0.96236 0.95184 0.97182 1.21741 1.01493 0.95833 1.00210 1.19470 0.86048 0.88769 0.97908 0.90656 1.59152 1.07229 1.62464 1.07560 1.21746 0.90776 0.96116 1.16553 1.22145 0.96690 0.87565 1.21432 1.46672 1.05966 1.05529 1.33441 1.20096 0.95535 0.77795 1.51834 0.86339 1.25778 0.94605 1.02019 0.94871 1.70128 1.00060 1.35788 1.32548 0.85760 0.78881 0.79059 0.79793 1.18820 1.19776 1.18826 1.82552 0.96873 0.99302 1.28527 1.73843 1.18139 1.07398 1.18360 0.93604 0.94439 0.88673 0.92261 0.91977 0.94067 0.93450 0.85072 0.85113 0.83373 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 8.78 37.16 0.33 -2.49 16 2 C -0.08 -1.30 2.65 -90.62 -0.24 -1.54 16 3 C -0.14 -1.93 9.04 37.16 0.34 -1.60 16 4 C 0.19 3.48 2.88 -68.86 -0.20 3.29 16 5 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 6 N -0.84 -12.60 7.90 -5.65 -0.04 -12.64 16 7 C -0.10 -2.34 6.24 -83.06 -0.52 -2.86 16 8 C -0.12 -2.89 10.54 -16.57 -0.17 -3.07 16 9 N -0.14 -3.92 3.78 -11.47 -0.04 -3.97 16 10 C -0.32 -8.11 10.31 -14.69 -0.15 -8.26 16 11 H 0.12 2.69 7.83 -52.48 -0.41 2.28 16 12 C 0.05 1.17 5.50 -17.51 -0.10 1.07 16 13 N -0.76 -20.49 11.89 55.50 0.66 -19.83 16 14 Si 0.94 18.03 29.55 -169.99 -5.02 13.00 16 15 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 16 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 17 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 18 N -0.10 -2.79 11.73 60.35 0.71 -2.09 16 19 N -0.32 -8.40 9.37 33.16 0.31 -8.09 16 20 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.09 2.07 5.26 -51.93 -0.27 1.80 16 23 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.06 0.86 7.60 -51.93 -0.39 0.47 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.34 4.77 8.64 -39.29 -0.34 4.43 16 28 H 0.34 4.92 8.70 -39.29 -0.34 4.58 16 29 H 0.15 2.88 7.54 -52.48 -0.40 2.48 16 30 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 254.22 15.07 3.83 3.83 Total: -1.00 -29.69 254.22 -4.15 -33.84 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -3.83 Total: 11.41 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -0.72 Total: -15.47 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 1.59 Total: -46.62 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.02 Total: 13.00 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.69 -4.15 -33.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600973845.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.099 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds