Wall clock time and date at job start Sun Mar 29 2020 21:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47343 * 2 1 4 4 C 1.53002 * 109.46891 * 120.00400 * 2 1 3 5 5 H 1.09004 * 109.47006 * 299.99770 * 4 2 1 6 6 N 1.46906 * 109.47053 * 179.97438 * 4 2 1 7 7 C 1.50699 * 109.47389 * 59.99839 * 4 2 1 8 8 C 1.34941 * 125.48716 * 124.71978 * 7 4 2 9 9 N 1.36667 * 106.72983 * 179.84511 * 8 7 4 10 10 C 1.37562 * 126.89072 * 180.14851 * 9 8 7 11 11 H 1.08004 * 119.99814 * 0.33349 * 10 9 8 12 12 C 1.39012 * 120.00195 * 180.33224 * 10 9 8 13 13 N 1.31248 * 120.00179 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99975 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47309 * 59.99829 * 14 12 10 16 16 H 1.48500 * 109.47076 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47149 * 299.99524 * 14 12 10 18 18 N 1.40333 * 106.22356 * 0.40609 * 9 8 7 19 19 N 1.28753 * 108.02947 * 359.74291 * 18 9 8 20 20 H 1.08996 * 109.47261 * 300.00175 * 1 2 3 21 21 H 1.09004 * 109.47368 * 59.99791 * 1 2 3 22 22 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47108 * 240.00108 * 2 1 3 24 24 H 1.09002 * 109.47067 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47312 * 299.99943 * 3 2 1 26 26 H 1.09004 * 109.46930 * 59.99999 * 3 2 1 27 27 H 1.00900 * 110.99554 * 176.04406 * 6 4 2 28 28 H 1.00900 * 110.99744 * 299.99884 * 6 4 2 29 29 H 1.08007 * 126.63807 * 0.02562 * 8 7 4 30 30 H 0.97000 * 120.00301 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7214 1.2492 5 1 1.6766 -0.2075 2.1393 6 7 3.5090 -0.7219 1.2490 7 6 1.5376 -2.1421 1.2492 8 6 2.3088 -3.2457 1.3396 9 7 1.4642 -4.3197 1.3069 10 6 1.8147 -5.6482 1.3749 11 1 2.8534 -5.9285 1.4696 12 6 0.8319 -6.6299 1.3216 13 7 -0.4303 -6.2893 1.2060 14 14 1.3078 -8.4339 1.4147 15 1 2.0074 -8.6958 2.6981 16 1 0.0851 -9.2730 1.3365 17 1 2.2093 -8.7670 0.2825 18 7 0.1682 -3.7957 1.1841 19 7 0.2587 -2.5117 1.1540 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.8705 -1.1356 2.0953 28 1 3.8702 -1.1931 0.4331 29 1 3.3851 -3.2747 1.4246 30 1 -1.1161 -6.9744 1.1693 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600973845.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:55 Heat of formation + Delta-G solvation = 56.742780 kcal Electronic energy + Delta-G solvation = -13945.918429 eV Core-core repulsion = 11583.837190 eV Total energy + Delta-G solvation = -2362.081239 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.14058 -38.09157 -35.89894 -33.54159 -33.16100 -30.17144 -28.14427 -27.29198 -25.46138 -23.21650 -21.80368 -20.78977 -19.47404 -17.51670 -16.83055 -16.31835 -15.89125 -15.67979 -15.24430 -15.05527 -14.11180 -13.75202 -13.45776 -13.31450 -12.99951 -12.94359 -12.73706 -12.25071 -12.14423 -11.85975 -11.68271 -11.61013 -11.37174 -10.84963 -10.61652 -9.66914 -9.30975 -8.71335 -6.64752 1.09556 1.35389 1.53859 1.62961 2.04832 2.19020 2.76520 2.90162 3.74075 3.98235 4.14948 4.28326 4.43075 4.65022 4.68442 4.85834 4.91034 4.94990 5.06940 5.14006 5.17444 5.29431 5.47839 5.60201 5.68560 5.93082 6.07294 6.25972 6.59782 6.66958 7.16885 8.22848 8.29676 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.065105 B = 0.007878 C = 0.007224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.973669 B = 3553.353755 C = 3875.122159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.073 4.073 3 C -0.125 4.125 4 C 0.198 3.802 5 H 0.074 0.926 6 N -0.820 5.820 7 C -0.097 4.097 8 C -0.129 4.129 9 N -0.163 5.163 10 C -0.346 4.346 11 H 0.145 0.855 12 C -0.001 4.001 13 N -0.810 5.810 14 Si 1.027 2.973 15 H -0.250 1.250 16 H -0.273 1.273 17 H -0.250 1.250 18 N -0.158 5.158 19 N -0.340 5.340 20 H 0.048 0.952 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.346 0.654 28 H 0.343 0.657 29 H 0.186 0.814 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.722 4.205 -0.744 8.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.093 4.093 3 C -0.182 4.182 4 C 0.083 3.917 5 H 0.092 0.908 6 N -0.348 5.348 7 C -0.248 4.248 8 C -0.282 4.282 9 N 0.065 4.935 10 C -0.482 4.482 11 H 0.162 0.838 12 C -0.216 4.216 13 N -0.437 5.437 14 Si 0.844 3.156 15 H -0.174 1.174 16 H -0.197 1.197 17 H -0.174 1.174 18 N -0.134 5.134 19 N -0.198 5.198 20 H 0.067 0.933 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.159 0.841 28 H 0.156 0.844 29 H 0.203 0.797 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.828 4.676 -0.899 7.526 hybrid contribution 0.695 -1.833 0.196 1.970 sum 6.524 2.843 -0.703 7.151 Atomic orbital electron populations 1.21971 0.95756 1.02712 1.00676 1.20918 0.95301 0.97008 0.96023 1.21645 1.01846 0.93521 1.01213 1.19527 0.87701 0.85992 0.98446 0.90779 1.59115 1.04914 1.62431 1.08336 1.22656 0.89663 0.98461 1.14014 1.22876 0.98283 0.86824 1.20257 1.47017 1.06093 1.06760 1.33636 1.20923 0.97194 0.77848 1.52249 0.83782 1.27087 0.94038 1.07269 0.93222 1.70294 1.01721 1.37763 1.33948 0.84537 0.78651 0.71814 0.80580 1.17390 1.19723 1.17404 1.82517 0.98654 1.00508 1.31698 1.73874 1.20025 1.06767 1.19150 0.93278 0.92634 0.92540 0.93273 0.91222 0.92627 0.92929 0.84118 0.84432 0.79660 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.49 8.78 71.98 0.63 -4.85 16 2 C -0.07 -2.38 2.65 -10.79 -0.03 -2.41 16 3 C -0.12 -3.20 9.04 71.98 0.65 -2.55 16 4 C 0.20 6.88 2.88 44.17 0.13 7.01 16 5 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 6 N -0.82 -22.44 7.90 -171.78 -1.36 -23.79 16 7 C -0.10 -4.44 6.24 41.55 0.26 -4.18 16 8 C -0.13 -5.91 10.54 83.18 0.88 -5.04 16 9 N -0.16 -8.94 3.78 -190.21 -0.72 -9.66 16 10 C -0.35 -17.74 10.31 83.98 0.87 -16.88 16 11 H 0.14 6.33 7.83 -2.91 -0.02 6.30 16 12 C 0.00 -0.06 5.50 84.97 0.47 0.40 16 13 N -0.81 -45.02 11.89 21.66 0.26 -44.77 16 14 Si 1.03 36.21 29.55 68.60 2.03 38.23 16 15 H -0.25 -8.22 7.11 99.48 0.71 -7.51 16 16 H -0.27 -9.46 7.11 99.48 0.71 -8.76 16 17 H -0.25 -8.22 7.11 99.48 0.71 -7.52 16 18 N -0.16 -9.54 11.73 37.02 0.43 -9.11 16 19 N -0.34 -18.51 9.37 -49.00 -0.46 -18.97 16 20 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.06 2.51 5.26 -2.39 -0.01 2.50 16 23 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 24 H 0.07 1.69 7.60 -2.39 -0.02 1.68 16 25 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 26 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.35 8.73 8.64 -89.69 -0.77 7.95 16 28 H 0.34 9.02 8.70 -89.69 -0.78 8.24 16 29 H 0.19 6.76 7.54 -2.91 -0.02 6.73 16 30 H 0.29 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -66.62 254.22 3.64 -62.98 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -0.40 Total: 33.57 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 3.85 Total: -28.49 kcal Atomic # 7 Polarization: -104.45 SS G_CDS: -1.84 Total: -106.30 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.23 kcal Total: -66.62 3.64 -62.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600973845.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.722 kcal (2) G-P(sol) polarization free energy of solvation -66.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds