Wall clock time and date at job start Sun Mar 29 2020 21:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33308 * 125.04494 * 2 1 4 4 C 1.38810 * 114.98994 * 179.69062 * 3 2 1 5 5 N 1.39499 * 122.74758 * 180.25041 * 4 3 2 6 6 C 1.34780 * 119.99672 * 148.42874 * 5 4 3 7 7 O 1.21866 * 120.00258 * 4.73583 * 6 5 4 8 8 C 1.41292 * 119.99566 * 184.74798 * 6 5 4 9 9 H 1.07994 * 120.00320 * 359.97438 * 8 6 5 10 10 C 1.40138 * 119.99469 * 179.97438 * 8 6 5 11 11 N 1.30631 * 120.00474 * 359.97438 * 10 8 6 12 12 Si 1.86809 * 119.99587 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47197 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47247 * 119.99673 * 12 10 8 15 15 H 1.48502 * 109.46622 * 239.99327 * 12 10 8 16 16 C 1.34946 * 114.49596 * 0.26773 * 4 3 2 17 17 S 1.75826 * 125.04689 * 180.10115 * 2 1 3 18 18 H 1.09000 * 109.46800 * 90.00301 * 1 2 3 19 19 H 1.08998 * 109.46996 * 209.99883 * 1 2 3 20 20 H 1.08997 * 109.47539 * 330.00633 * 1 2 3 21 21 H 1.08003 * 122.50449 * 359.95413 * 3 2 1 22 22 H 0.96998 * 120.00330 * 328.41714 * 5 4 3 23 23 H 0.97001 * 120.00174 * 180.02562 * 11 10 8 24 24 H 1.07999 * 125.25294 * 180.02562 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2725 1.0914 0.0000 4 6 3.6392 0.8491 0.0068 5 7 4.5871 1.8726 0.0129 6 6 5.7714 1.6905 0.6300 7 8 6.0491 0.6042 1.1075 8 6 6.6909 2.7592 0.7234 9 1 6.4449 3.7218 0.3001 10 6 7.9221 2.5700 1.3655 11 7 8.2194 1.4058 1.8780 12 14 9.1381 3.9828 1.4884 13 1 8.5664 5.1864 0.8330 14 1 9.4098 4.2791 2.9180 15 1 10.4049 3.6057 0.8116 16 6 3.9758 -0.4578 0.0066 17 16 2.5167 -1.4395 -0.0025 18 1 -0.3633 -0.0001 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3634 0.8900 0.5137 21 1 1.8600 2.0896 -0.0007 22 1 4.3939 2.7152 -0.4270 23 1 9.0715 1.2751 2.3228 24 1 4.9853 -0.8415 0.0117 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601878023.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:55 Heat of formation + Delta-G solvation = -11.230384 kcal Electronic energy + Delta-G solvation = -11407.348200 eV Core-core repulsion = 9219.227787 eV Total energy + Delta-G solvation = -2188.120413 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.67905 -36.30538 -33.17439 -32.26983 -30.33931 -26.77435 -25.92524 -22.51365 -19.92370 -18.45402 -17.79471 -16.20541 -15.46995 -15.01103 -14.05959 -13.65814 -13.52939 -12.92997 -12.58582 -12.45207 -11.76996 -11.52297 -11.42699 -11.23907 -11.06388 -10.60260 -10.31992 -10.27970 -9.14165 -8.72363 -8.02405 -7.63887 -6.84088 -6.34891 -4.87857 1.66837 2.25713 2.70183 3.04250 3.13583 3.18269 3.44483 4.00549 4.46118 4.82697 5.32898 5.49416 5.65348 5.76338 5.85428 5.96849 6.37590 6.54796 6.95624 7.08765 7.26019 7.92404 8.06979 8.25597 8.82665 9.37599 10.41639 10.64017 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.078529 B = 0.007410 C = 0.006896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.472750 B = 3777.907349 C = 4059.324435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.186 4.186 3 C -0.150 4.150 4 C 0.150 3.850 5 N -0.690 5.690 6 C 0.545 3.455 7 O -0.567 6.567 8 C -0.538 4.538 9 H 0.070 0.930 10 C 0.088 3.912 11 N -0.748 5.748 12 Si 0.913 3.087 13 H -0.262 1.262 14 H -0.274 1.274 15 H -0.274 1.274 16 C -0.230 4.230 17 S 0.054 5.946 18 H 0.068 0.932 19 H 0.064 0.936 20 H 0.070 0.930 21 H 0.133 0.867 22 H 0.390 0.610 23 H 0.272 0.728 24 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.798 0.206 -3.704 10.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.303 4.303 3 C -0.183 4.183 4 C 0.043 3.957 5 N -0.335 5.335 6 C 0.354 3.646 7 O -0.451 6.451 8 C -0.574 4.574 9 H 0.088 0.912 10 C -0.135 4.135 11 N -0.376 5.376 12 Si 0.737 3.263 13 H -0.186 1.186 14 H -0.200 1.200 15 H -0.199 1.199 16 C -0.369 4.369 17 S 0.314 5.686 18 H 0.087 0.913 19 H 0.083 0.917 20 H 0.089 0.911 21 H 0.151 0.849 22 H 0.223 0.777 23 H 0.083 0.917 24 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -9.644 -2.164 -3.232 10.399 hybrid contribution 0.876 2.670 -0.041 2.811 sum -8.768 0.507 -3.273 9.372 Atomic orbital electron populations 1.20240 0.88453 1.02549 1.02052 1.24003 0.99164 0.96029 1.11152 1.19866 0.92315 0.99107 1.07059 1.16840 0.88591 0.89433 1.00843 1.43819 1.16665 1.14603 1.58374 1.16952 0.79485 0.89872 0.78298 1.90640 1.75566 1.27368 1.51499 1.19955 1.01079 0.97938 1.38439 0.91185 1.25771 0.98390 0.96180 0.93176 1.70028 1.20824 1.22431 1.24294 0.86232 0.80022 0.81460 0.78612 1.18567 1.19952 1.19936 1.25816 1.00826 0.94907 1.15389 1.83774 0.98326 1.10380 1.76157 0.91342 0.91718 0.91128 0.84926 0.77703 0.91748 0.80552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.37 36.00 0.37 -0.49 14 2 C -0.19 -3.01 6.49 -36.03 -0.23 -3.25 14 3 C -0.15 -2.69 10.02 -41.09 -0.41 -3.10 14 4 C 0.15 3.29 6.33 -85.33 -0.54 2.75 14 5 N -0.69 -16.16 5.38 -13.56 -0.07 -16.24 14 6 C 0.55 15.52 7.45 -15.10 -0.11 15.40 14 7 O -0.57 -18.08 12.44 5.04 0.06 -18.01 14 8 C -0.54 -14.91 9.29 -37.71 -0.35 -15.26 14 9 H 0.07 1.76 7.85 -52.49 -0.41 1.35 14 10 C 0.09 2.38 5.50 -17.35 -0.10 2.29 14 11 N -0.75 -21.87 11.72 55.55 0.65 -21.22 14 12 Si 0.91 19.53 29.56 -169.99 -5.02 14.51 14 13 H -0.26 -5.40 7.11 56.52 0.40 -5.00 14 14 H -0.27 -5.76 7.11 56.52 0.40 -5.36 14 15 H -0.27 -5.74 7.11 56.52 0.40 -5.34 14 16 C -0.23 -5.15 9.86 29.56 0.29 -4.86 14 17 S 0.05 0.95 23.31 -107.50 -2.51 -1.55 14 18 H 0.07 0.69 8.14 -51.93 -0.42 0.27 14 19 H 0.06 0.68 8.14 -51.93 -0.42 0.26 14 20 H 0.07 0.73 8.14 -51.93 -0.42 0.31 14 21 H 0.13 2.04 8.06 -52.48 -0.42 1.62 14 22 H 0.39 7.82 8.78 -40.82 -0.36 7.46 14 23 H 0.27 7.13 8.29 -40.82 -0.34 6.79 14 24 H 0.18 4.49 6.49 -52.49 -0.34 4.15 14 LS Contribution 232.93 15.07 3.51 3.51 Total: -1.00 -32.62 232.93 -6.39 -39.01 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -1.94 Total: 6.51 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.08 Total: -6.51 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.58 Total: -37.46 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.06 Total: -18.01 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.55 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -32.62 -6.39 -39.01 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601878023.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.781 kcal (2) G-P(sol) polarization free energy of solvation -32.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds