Wall clock time and date at job start Sun Mar 29 2020 21:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33308 * 125.04494 * 2 1 4 4 C 1.38810 * 114.98994 * 179.69062 * 3 2 1 5 5 N 1.39499 * 122.74758 * 180.25041 * 4 3 2 6 6 C 1.34780 * 119.99672 * 148.42874 * 5 4 3 7 7 O 1.21866 * 120.00258 * 4.73583 * 6 5 4 8 8 C 1.41292 * 119.99566 * 184.74798 * 6 5 4 9 9 H 1.07994 * 120.00320 * 359.97438 * 8 6 5 10 10 C 1.40138 * 119.99469 * 179.97438 * 8 6 5 11 11 N 1.30631 * 120.00474 * 359.97438 * 10 8 6 12 12 Si 1.86809 * 119.99587 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47197 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47247 * 119.99673 * 12 10 8 15 15 H 1.48502 * 109.46622 * 239.99327 * 12 10 8 16 16 C 1.34946 * 114.49596 * 0.26773 * 4 3 2 17 17 S 1.75826 * 125.04689 * 180.10115 * 2 1 3 18 18 H 1.09000 * 109.46800 * 90.00301 * 1 2 3 19 19 H 1.08998 * 109.46996 * 209.99883 * 1 2 3 20 20 H 1.08997 * 109.47539 * 330.00633 * 1 2 3 21 21 H 1.08003 * 122.50449 * 359.95413 * 3 2 1 22 22 H 0.96998 * 120.00330 * 328.41714 * 5 4 3 23 23 H 0.97001 * 120.00174 * 180.02562 * 11 10 8 24 24 H 1.07999 * 125.25294 * 180.02562 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2725 1.0914 0.0000 4 6 3.6392 0.8491 0.0068 5 7 4.5871 1.8726 0.0129 6 6 5.7714 1.6905 0.6300 7 8 6.0491 0.6042 1.1075 8 6 6.6909 2.7592 0.7234 9 1 6.4449 3.7218 0.3001 10 6 7.9221 2.5700 1.3655 11 7 8.2194 1.4058 1.8780 12 14 9.1381 3.9828 1.4884 13 1 8.5664 5.1864 0.8330 14 1 9.4098 4.2791 2.9180 15 1 10.4049 3.6057 0.8116 16 6 3.9758 -0.4578 0.0066 17 16 2.5167 -1.4395 -0.0025 18 1 -0.3633 -0.0001 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3634 0.8900 0.5137 21 1 1.8600 2.0896 -0.0007 22 1 4.3939 2.7152 -0.4270 23 1 9.0715 1.2751 2.3228 24 1 4.9853 -0.8415 0.0117 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601878023.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:54 Heat of formation + Delta-G solvation = -34.421052 kcal Electronic energy + Delta-G solvation = -11408.353823 eV Core-core repulsion = 9219.227787 eV Total energy + Delta-G solvation = -2189.126036 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.041 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.51360 -38.10258 -35.03220 -34.27405 -31.85999 -28.76700 -27.37255 -24.21388 -21.66283 -20.15329 -19.65300 -17.99345 -17.39723 -16.64672 -15.87203 -15.12254 -14.99333 -14.50702 -14.40112 -13.88081 -13.32965 -13.19516 -12.91189 -12.77582 -12.74494 -12.62897 -11.98807 -11.69879 -11.05954 -10.59995 -9.89458 -9.39735 -8.56598 -8.39988 -7.03891 0.18440 0.83537 1.14891 1.36717 1.38835 1.57737 1.82325 2.20637 2.44521 3.11288 3.63771 4.06185 4.44401 4.57021 4.74429 4.83818 5.12521 5.16415 5.19955 5.38358 5.49042 5.87503 6.17979 6.34804 6.71609 7.42387 8.38027 8.56120 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.078529 B = 0.007410 C = 0.006896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.472750 B = 3777.907349 C = 4059.324435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.158 4.158 3 C -0.170 4.170 4 C 0.136 3.864 5 N -0.684 5.684 6 C 0.527 3.473 7 O -0.615 6.615 8 C -0.564 4.564 9 H 0.092 0.908 10 C 0.029 3.971 11 N -0.803 5.803 12 Si 1.005 2.995 13 H -0.244 1.244 14 H -0.267 1.267 15 H -0.267 1.267 16 C -0.283 4.283 17 S 0.099 5.901 18 H 0.093 0.907 19 H 0.079 0.921 20 H 0.091 0.909 21 H 0.162 0.838 22 H 0.406 0.594 23 H 0.279 0.721 24 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.618 1.827 -4.067 12.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.276 4.276 3 C -0.202 4.202 4 C 0.029 3.971 5 N -0.330 5.330 6 C 0.336 3.664 7 O -0.503 6.503 8 C -0.599 4.599 9 H 0.110 0.890 10 C -0.189 4.189 11 N -0.431 5.431 12 Si 0.824 3.176 13 H -0.167 1.167 14 H -0.191 1.191 15 H -0.191 1.191 16 C -0.423 4.423 17 S 0.358 5.642 18 H 0.111 0.889 19 H 0.098 0.902 20 H 0.110 0.890 21 H 0.180 0.820 22 H 0.241 0.759 23 H 0.089 0.911 24 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.519 -0.537 -3.627 12.089 hybrid contribution 1.302 2.063 0.033 2.440 sum -10.217 1.527 -3.595 10.938 Atomic orbital electron populations 1.20477 0.84388 1.04377 1.04184 1.24735 1.01473 0.94474 1.06930 1.19962 0.90182 1.01238 1.08838 1.17335 0.90185 0.88758 1.00842 1.43418 1.15954 1.15752 1.57833 1.17380 0.80960 0.89595 0.78416 1.90608 1.77118 1.28990 1.53555 1.20501 1.01804 0.98639 1.38973 0.89004 1.27102 1.00505 0.99463 0.91840 1.70185 1.21995 1.25573 1.25352 0.84863 0.76541 0.77226 0.78997 1.16696 1.19138 1.19145 1.25610 1.01494 0.96763 1.18392 1.83477 0.95412 1.09862 1.75413 0.88853 0.90167 0.89016 0.82029 0.75911 0.91082 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 10.37 71.24 0.74 -0.65 14 2 C -0.16 -4.66 6.49 24.57 0.16 -4.50 14 3 C -0.17 -5.79 10.02 21.29 0.21 -5.58 14 4 C 0.14 6.09 6.33 37.30 0.24 6.32 14 5 N -0.68 -32.92 5.38 -314.95 -1.69 -34.62 14 6 C 0.53 31.29 7.45 84.99 0.63 31.92 14 7 O -0.62 -41.68 12.44 -4.88 -0.06 -41.74 14 8 C -0.56 -31.78 9.29 23.48 0.22 -31.57 14 9 H 0.09 4.58 7.85 -2.91 -0.02 4.55 14 10 C 0.03 1.59 5.50 85.33 0.47 2.06 14 11 N -0.80 -48.65 11.72 21.85 0.26 -48.39 14 12 Si 1.01 39.95 29.56 68.60 2.03 41.98 14 13 H -0.24 -8.91 7.11 99.48 0.71 -8.20 14 14 H -0.27 -10.19 7.11 99.48 0.71 -9.48 14 15 H -0.27 -10.19 7.11 99.48 0.71 -9.49 14 16 C -0.28 -13.33 9.86 67.06 0.66 -12.67 14 17 S 0.10 3.37 23.31 -56.49 -1.32 2.06 14 18 H 0.09 1.37 8.14 -2.39 -0.02 1.35 14 19 H 0.08 1.29 8.14 -2.39 -0.02 1.27 14 20 H 0.09 1.40 8.14 -2.39 -0.02 1.38 14 21 H 0.16 4.48 8.06 -2.91 -0.02 4.45 14 22 H 0.41 16.33 8.78 -92.71 -0.81 15.52 14 23 H 0.28 15.15 8.29 -92.71 -0.77 14.38 14 24 H 0.13 7.36 6.49 -2.91 -0.02 7.35 14 Total: -1.00 -75.24 232.93 2.96 -72.28 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.41 Total: 23.09 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 3.33 Total: -14.66 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -1.44 Total: -83.01 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -0.06 Total: -41.74 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -1.32 Total: 2.06 kcal Total: -75.24 2.96 -72.28 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601878023.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.860 kcal (2) G-P(sol) polarization free energy of solvation -75.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds