Wall clock time and date at job start Sun Mar 29 2020 21:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.27375 * 119.30805 * 2 1 4 4 N 1.39722 * 121.82441 * 181.30899 * 3 2 1 5 5 C 1.46500 * 119.74755 * 195.38036 * 4 3 2 6 6 C 1.50696 * 109.46944 * 270.00236 * 5 4 3 7 7 H 1.07999 * 120.00202 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99746 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99573 * 0.27650 * 8 6 5 10 10 Si 1.86800 * 119.99781 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46758 * 89.99934 * 10 8 6 12 12 H 1.48499 * 109.47026 * 209.99782 * 10 8 6 13 13 H 1.48496 * 109.47474 * 329.99818 * 10 8 6 14 14 C 1.34710 * 120.50574 * 15.65858 * 4 3 2 15 15 O 1.21300 * 120.28043 * 183.60203 * 14 4 3 16 16 C 1.50902 * 119.46118 * 3.35582 * 14 4 3 17 17 H 1.09000 * 109.64848 * 205.38319 * 16 14 4 18 18 C 1.53001 * 109.41262 * 85.21875 * 16 14 4 19 19 C 1.50560 * 119.31167 * 179.97438 * 2 1 3 20 20 H 1.08996 * 109.47071 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47166 * 120.00128 * 1 2 3 22 22 H 1.09008 * 109.47144 * 239.99915 * 1 2 3 23 23 H 1.09000 * 109.46609 * 150.00418 * 5 4 3 24 24 H 1.08999 * 109.46486 * 30.00497 * 5 4 3 25 25 H 0.97001 * 120.00651 * 359.71956 * 9 8 6 26 26 H 1.08993 * 109.47472 * 300.41883 * 18 16 14 27 27 H 1.09000 * 109.47203 * 60.42462 * 18 16 14 28 28 H 1.09001 * 109.46875 * 180.41388 * 18 16 14 29 29 H 1.08997 * 109.43635 * 266.63280 * 19 2 1 30 30 H 1.08999 * 109.43543 * 26.50330 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1305 1.1107 0.0000 4 7 3.5261 1.1722 -0.0271 5 6 4.2052 2.4256 0.3108 6 6 4.3942 3.2470 -0.9383 7 1 4.0439 2.8728 -1.8889 8 6 5.0153 4.4761 -0.8678 9 7 5.4476 4.9288 0.2888 10 14 5.2502 5.4941 -2.4163 11 1 4.0728 6.3778 -2.6109 12 1 6.4748 6.3233 -2.2825 13 1 5.3897 4.5904 -3.5864 14 6 4.2519 0.0894 -0.3670 15 8 5.4636 0.1278 -0.3264 16 6 3.5450 -1.1738 -0.7935 17 1 4.1845 -2.0349 -0.5996 18 6 3.2270 -1.0986 -2.2882 19 6 2.2441 -1.3128 0.0006 20 1 -0.3633 1.0276 0.0005 21 1 -0.3633 -0.5139 -0.8900 22 1 -0.3634 -0.5139 0.8900 23 1 5.1776 2.2046 0.7510 24 1 3.6013 2.9846 1.0256 25 1 5.3259 4.4001 1.0929 26 1 2.5903 -0.2353 -2.4813 27 1 4.1543 -0.9998 -2.8525 28 1 2.7098 -2.0075 -2.5958 29 1 2.4743 -1.5991 1.0268 30 1 1.6196 -2.0796 -0.4578 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601931960.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:48 Heat of formation + Delta-G solvation = -10.937573 kcal Electronic energy + Delta-G solvation = -14125.846008 eV Core-core repulsion = 11728.537178 eV Total energy + Delta-G solvation = -2397.308830 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.16599 -36.95422 -34.73054 -33.03573 -32.29074 -28.68904 -27.25722 -26.30514 -23.69901 -22.16042 -21.29998 -17.37628 -16.79654 -16.44175 -15.81765 -15.17256 -14.27673 -13.89723 -13.64667 -13.47401 -13.18500 -12.67912 -12.40033 -12.13518 -11.97980 -11.56060 -11.49714 -11.29984 -11.00788 -10.78353 -10.61460 -10.11053 -10.02302 -9.01831 -8.84998 -8.38238 -7.65442 -6.39166 -4.10111 2.12150 3.12048 3.36512 3.44367 3.49230 3.65098 4.33009 4.54313 4.67968 4.74605 5.04411 5.24915 5.37269 5.48134 5.54484 5.57026 5.62205 5.72965 5.80791 5.90097 6.20084 6.24204 6.62414 6.92550 7.13202 7.24026 7.98163 8.36756 8.52499 8.79005 8.92583 9.57644 10.98647 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.036431 B = 0.009643 C = 0.009086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.398548 B = 2902.875060 C = 3080.760495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.068 3.932 3 N -0.228 5.228 4 N -0.433 5.433 5 C 0.253 3.747 6 C -0.602 4.602 7 H 0.052 0.948 8 C 0.020 3.980 9 N -0.909 5.909 10 Si 1.077 2.923 11 H -0.286 1.286 12 H -0.282 1.282 13 H -0.289 1.289 14 C 0.491 3.509 15 O -0.524 6.524 16 C -0.116 4.116 17 H 0.107 0.893 18 C -0.139 4.139 19 C -0.112 4.112 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.042 0.958 24 H 0.033 0.967 25 H 0.267 0.733 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.114 -12.690 -1.685 16.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 N -0.034 5.034 4 N -0.251 5.251 5 C 0.135 3.865 6 C -0.641 4.641 7 H 0.070 0.930 8 C -0.184 4.184 9 N -0.545 5.545 10 Si 0.905 3.095 11 H -0.213 1.213 12 H -0.208 1.208 13 H -0.216 1.216 14 C 0.277 3.723 15 O -0.397 6.397 16 C -0.138 4.138 17 H 0.125 0.875 18 C -0.196 4.196 19 C -0.152 4.152 20 H 0.096 0.904 21 H 0.094 0.906 22 H 0.095 0.905 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.744 -10.242 -2.207 13.646 hybrid contribution -0.373 -2.279 0.506 2.364 sum -9.117 -12.520 -1.701 15.581 Atomic orbital electron populations 1.20562 0.87644 1.04017 1.02480 1.24635 0.97442 0.90552 0.99973 1.73551 0.93905 1.25667 1.10313 1.49233 0.99561 1.12984 1.63332 1.19450 0.91439 0.78136 0.97520 1.22187 1.42660 1.05173 0.94067 0.92971 1.25839 0.93162 0.96016 1.03367 1.70773 1.44016 1.40529 0.99201 0.83430 0.76857 0.75396 0.73823 1.21290 1.20786 1.21556 1.20926 0.88049 0.85270 0.78041 1.90691 1.13607 1.83573 1.51864 1.21497 0.97187 0.97369 0.97785 0.87512 1.21698 1.02557 1.02480 0.92879 1.21160 0.95512 0.96999 1.01508 0.90414 0.90567 0.90539 0.94010 0.94914 0.92244 0.92102 0.91675 0.91326 0.89688 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 10.17 36.01 0.37 -0.54 16 2 C 0.07 1.02 6.28 -79.23 -0.50 0.52 16 3 N -0.23 -4.67 11.17 35.13 0.39 -4.27 16 4 N -0.43 -10.41 3.46 -61.41 -0.21 -10.62 16 5 C 0.25 7.10 4.78 -5.20 -0.02 7.07 16 6 C -0.60 -18.20 9.38 -34.44 -0.32 -18.53 16 7 H 0.05 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 9 N -0.91 -28.46 13.65 55.43 0.76 -27.70 16 10 Si 1.08 26.47 29.90 -169.99 -5.08 21.39 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 14 C 0.49 11.10 6.80 -10.92 -0.07 11.03 16 15 O -0.52 -13.89 16.67 5.54 0.09 -13.80 16 16 C -0.12 -1.84 3.16 -91.65 -0.29 -2.13 16 17 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 18 C -0.14 -1.98 9.03 37.16 0.34 -1.65 16 19 C -0.11 -1.40 5.46 -27.93 -0.15 -1.55 16 20 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 21 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 23 H 0.04 1.26 7.23 -51.93 -0.38 0.88 16 24 H 0.03 0.93 8.01 -51.93 -0.42 0.52 16 25 H 0.27 8.31 7.22 -40.82 -0.29 8.02 16 26 H 0.06 0.97 7.69 -51.93 -0.40 0.57 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.09 0.82 8.02 -51.93 -0.42 0.40 16 LS Contribution 259.62 15.07 3.91 3.91 Total: -1.00 -35.65 259.62 -4.96 -40.61 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: -4.06 Total: -4.25 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -0.76 Total: -5.26 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.94 Total: -42.60 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.09 Total: -13.80 kcal Atomic # 14 Polarization: 26.47 SS G_CDS: -5.08 Total: 21.39 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -35.65 -4.96 -40.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601931960.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.673 kcal (2) G-P(sol) polarization free energy of solvation -35.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds