Wall clock time and date at job start Sun Mar 29 2020 21:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.27375 * 119.30805 * 2 1 4 4 N 1.39722 * 121.82441 * 181.30899 * 3 2 1 5 5 C 1.46500 * 119.74755 * 195.38036 * 4 3 2 6 6 C 1.50696 * 109.46944 * 270.00236 * 5 4 3 7 7 H 1.07999 * 120.00202 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99746 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99573 * 0.27650 * 8 6 5 10 10 Si 1.86800 * 119.99781 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46758 * 89.99934 * 10 8 6 12 12 H 1.48499 * 109.47026 * 209.99782 * 10 8 6 13 13 H 1.48496 * 109.47474 * 329.99818 * 10 8 6 14 14 C 1.34710 * 120.50574 * 15.65858 * 4 3 2 15 15 O 1.21300 * 120.28043 * 183.60203 * 14 4 3 16 16 C 1.50902 * 119.46118 * 3.35582 * 14 4 3 17 17 H 1.09000 * 109.64848 * 205.38319 * 16 14 4 18 18 C 1.53001 * 109.41262 * 85.21875 * 16 14 4 19 19 C 1.50560 * 119.31167 * 179.97438 * 2 1 3 20 20 H 1.08996 * 109.47071 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47166 * 120.00128 * 1 2 3 22 22 H 1.09008 * 109.47144 * 239.99915 * 1 2 3 23 23 H 1.09000 * 109.46609 * 150.00418 * 5 4 3 24 24 H 1.08999 * 109.46486 * 30.00497 * 5 4 3 25 25 H 0.97001 * 120.00651 * 359.71956 * 9 8 6 26 26 H 1.08993 * 109.47472 * 300.41883 * 18 16 14 27 27 H 1.09000 * 109.47203 * 60.42462 * 18 16 14 28 28 H 1.09001 * 109.46875 * 180.41388 * 18 16 14 29 29 H 1.08997 * 109.43635 * 266.63280 * 19 2 1 30 30 H 1.08999 * 109.43543 * 26.50330 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1305 1.1107 0.0000 4 7 3.5261 1.1722 -0.0271 5 6 4.2052 2.4256 0.3108 6 6 4.3942 3.2470 -0.9383 7 1 4.0439 2.8728 -1.8889 8 6 5.0153 4.4761 -0.8678 9 7 5.4476 4.9288 0.2888 10 14 5.2502 5.4941 -2.4163 11 1 4.0728 6.3778 -2.6109 12 1 6.4748 6.3233 -2.2825 13 1 5.3897 4.5904 -3.5864 14 6 4.2519 0.0894 -0.3670 15 8 5.4636 0.1278 -0.3264 16 6 3.5450 -1.1738 -0.7935 17 1 4.1845 -2.0349 -0.5996 18 6 3.2270 -1.0986 -2.2882 19 6 2.2441 -1.3128 0.0006 20 1 -0.3633 1.0276 0.0005 21 1 -0.3633 -0.5139 -0.8900 22 1 -0.3634 -0.5139 0.8900 23 1 5.1776 2.2046 0.7510 24 1 3.6013 2.9846 1.0256 25 1 5.3259 4.4001 1.0929 26 1 2.5903 -0.2353 -2.4813 27 1 4.1543 -0.9998 -2.8525 28 1 2.7098 -2.0075 -2.5958 29 1 2.4743 -1.5991 1.0268 30 1 1.6196 -2.0796 -0.4578 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601931960.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:48 Heat of formation + Delta-G solvation = -37.504515 kcal Electronic energy + Delta-G solvation = -14126.998037 eV Core-core repulsion = 11728.537178 eV Total energy + Delta-G solvation = -2398.460859 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.71864 -38.54082 -36.54075 -34.83051 -33.87305 -30.26311 -28.46540 -27.95056 -25.63866 -23.86097 -22.73568 -19.43557 -18.45381 -17.82906 -17.57454 -16.68145 -15.74935 -15.72300 -15.34054 -14.70857 -14.69298 -14.10095 -13.89172 -13.53609 -13.34772 -13.23707 -13.04124 -12.67493 -12.55914 -12.47465 -12.20101 -12.01194 -11.43487 -11.12229 -10.69708 -10.40927 -9.48357 -8.80003 -6.55390 0.77693 1.42982 1.50387 1.54871 1.73835 1.79325 2.47429 2.95676 3.06875 3.52417 3.61385 3.91627 4.07113 4.36613 4.51099 4.61384 4.63791 4.71084 4.76165 4.84640 4.86662 4.95726 5.09014 5.17583 5.47473 5.58673 5.66131 5.98323 6.32146 6.80025 7.22125 7.41516 8.54825 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.036431 B = 0.009643 C = 0.009086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.398548 B = 2902.875060 C = 3080.760495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.105 3.895 3 N -0.297 5.297 4 N -0.450 5.450 5 C 0.267 3.733 6 C -0.616 4.616 7 H 0.039 0.961 8 C -0.030 4.030 9 N -0.926 5.926 10 Si 1.126 2.874 11 H -0.262 1.262 12 H -0.274 1.274 13 H -0.279 1.279 14 C 0.470 3.530 15 O -0.588 6.588 16 C -0.108 4.108 17 H 0.129 0.871 18 C -0.134 4.134 19 C -0.111 4.111 20 H 0.062 0.938 21 H 0.115 0.885 22 H 0.113 0.887 23 H 0.005 0.995 24 H 0.017 0.983 25 H 0.254 0.746 26 H 0.039 0.961 27 H 0.043 0.957 28 H 0.123 0.877 29 H 0.100 0.900 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.852 -14.969 -2.965 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 N -0.103 5.103 4 N -0.266 5.266 5 C 0.146 3.854 6 C -0.654 4.654 7 H 0.057 0.943 8 C -0.228 4.228 9 N -0.562 5.562 10 Si 0.945 3.055 11 H -0.186 1.186 12 H -0.199 1.199 13 H -0.204 1.204 14 C 0.260 3.740 15 O -0.466 6.466 16 C -0.129 4.129 17 H 0.146 0.854 18 C -0.191 4.191 19 C -0.150 4.150 20 H 0.081 0.919 21 H 0.133 0.867 22 H 0.131 0.869 23 H 0.023 0.977 24 H 0.035 0.965 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.142 0.858 29 H 0.118 0.882 30 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.545 -12.550 -3.466 17.402 hybrid contribution 0.312 -1.727 0.972 2.006 sum -11.233 -14.277 -2.494 18.337 Atomic orbital electron populations 1.20864 0.83589 1.04337 1.05972 1.25832 0.99655 0.90560 0.92769 1.73693 0.91202 1.28856 1.16591 1.48996 1.01898 1.11769 1.63891 1.18826 0.90092 0.80219 0.96285 1.22403 1.42886 1.05952 0.94172 0.94269 1.27531 0.92052 0.97439 1.05780 1.70892 1.45223 1.40593 0.99495 0.82847 0.78001 0.74488 0.70116 1.18645 1.19912 1.20403 1.22352 0.87804 0.87072 0.76814 1.90635 1.16317 1.84887 1.54755 1.21621 0.98526 0.93675 0.99082 0.85352 1.21744 1.01774 1.04192 0.91416 1.21399 0.94135 0.96913 1.02565 0.91896 0.86695 0.86867 0.97679 0.96522 0.93641 0.94164 0.93734 0.85849 0.88157 0.82771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.38 10.17 71.24 0.72 -0.65 16 2 C 0.10 2.79 6.28 46.58 0.29 3.08 16 3 N -0.30 -12.20 11.17 -41.63 -0.46 -12.66 16 4 N -0.45 -22.64 3.46 -466.63 -1.61 -24.25 16 5 C 0.27 16.08 4.78 85.63 0.41 16.49 16 6 C -0.62 -39.16 9.38 25.60 0.24 -38.92 16 7 H 0.04 2.52 7.81 -2.91 -0.02 2.50 16 8 C -0.03 -1.86 5.46 84.66 0.46 -1.39 16 9 N -0.93 -60.24 13.65 21.45 0.29 -59.95 16 10 Si 1.13 53.84 29.90 68.60 2.05 55.90 16 11 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 12 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 C 0.47 21.99 6.80 87.73 0.60 22.58 16 15 O -0.59 -33.18 16.67 -3.09 -0.05 -33.23 16 16 C -0.11 -3.14 3.16 -11.46 -0.04 -3.17 16 17 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 18 C -0.13 -3.45 9.03 71.98 0.65 -2.80 16 19 C -0.11 -2.22 5.46 29.82 0.16 -2.06 16 20 H 0.06 1.22 8.09 -2.39 -0.02 1.20 16 21 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 23 H 0.01 0.35 7.23 -2.39 -0.02 0.34 16 24 H 0.02 1.03 8.01 -2.39 -0.02 1.01 16 25 H 0.25 16.82 7.22 -92.71 -0.67 16.15 16 26 H 0.04 1.19 7.69 -2.39 -0.02 1.18 16 27 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.15 1.39 8.02 -2.39 -0.02 1.38 16 Total: -1.00 -86.71 259.62 4.93 -81.77 By element: Atomic # 1 Polarization: -1.94 SS G_CDS: 1.22 Total: -0.73 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 3.50 Total: -6.85 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -1.78 Total: -96.87 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.05 Total: -33.23 kcal Atomic # 14 Polarization: 53.84 SS G_CDS: 2.05 Total: 55.90 kcal Total: -86.71 4.93 -81.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601931960.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.266 kcal (2) G-P(sol) polarization free energy of solvation -86.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds