Wall clock time and date at job start Sun Mar 29 2020 21:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.27370 * 119.31135 * 2 1 4 4 N 1.39723 * 121.83314 * 178.66725 * 3 2 1 5 5 C 1.46493 * 119.74825 * 164.62139 * 4 3 2 6 6 C 1.50704 * 109.46995 * 269.97829 * 5 4 3 7 7 H 1.07994 * 120.00281 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99788 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00040 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99610 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47579 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47037 * 119.99773 * 10 8 6 13 13 H 1.48500 * 109.46760 * 239.99247 * 10 8 6 14 14 C 1.34704 * 120.50129 * 344.60093 * 4 3 2 15 15 O 1.21301 * 120.28026 * 176.10519 * 14 4 3 16 16 C 1.50919 * 119.43948 * 356.12000 * 14 4 3 17 17 H 1.09007 * 109.54917 * 155.05281 * 16 14 4 18 18 C 1.52997 * 109.55251 * 275.24578 * 16 14 4 19 19 C 1.50576 * 119.32147 * 179.97438 * 2 1 3 20 20 H 1.08994 * 109.47620 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47300 * 120.00238 * 1 2 3 22 22 H 1.09006 * 109.47131 * 239.99580 * 1 2 3 23 23 H 1.08992 * 109.47396 * 29.98217 * 5 4 3 24 24 H 1.09001 * 109.47007 * 149.98171 * 5 4 3 25 25 H 0.97003 * 119.99859 * 180.02562 * 9 8 6 26 26 H 1.09002 * 109.47153 * 59.99741 * 18 16 14 27 27 H 1.09001 * 109.46832 * 299.99932 * 18 16 14 28 28 H 1.09004 * 109.47261 * 179.97438 * 18 16 14 29 29 H 1.09006 * 109.45423 * 93.40003 * 19 2 1 30 30 H 1.09004 * 109.42951 * 333.53043 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1305 1.1106 0.0000 4 7 3.5261 1.1723 0.0276 5 6 4.2052 2.4255 -0.3103 6 6 4.4828 2.4630 -1.7910 7 1 4.1830 1.6362 -2.4178 8 6 5.1196 3.5530 -2.3456 9 7 5.4843 4.5601 -1.5825 10 14 5.4631 3.5997 -4.1812 11 1 4.9567 2.3542 -4.8115 12 1 4.7796 4.7728 -4.7830 13 1 6.9266 3.7093 -4.4082 14 6 4.2519 0.0881 0.3630 15 8 5.4635 0.1252 0.3176 16 6 3.5448 -1.1731 0.7953 17 1 4.1852 -2.0342 0.6038 18 6 3.2256 -1.0947 2.2895 19 6 2.2444 -1.3129 0.0006 20 1 -0.3634 1.0276 0.0005 21 1 -0.3634 -0.5139 -0.8900 22 1 -0.3634 -0.5139 0.8900 23 1 3.5694 3.2680 -0.0383 24 1 5.1455 2.4884 0.2374 25 1 5.9320 5.3271 -1.9728 26 1 2.5825 -0.2352 2.4791 27 1 4.1519 -0.9867 2.8537 28 1 2.7146 -2.0060 2.6003 29 1 2.4753 -1.6000 -1.0253 30 1 1.6196 -2.0794 0.4591 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601931961.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:49 Heat of formation + Delta-G solvation = -33.571564 kcal Electronic energy + Delta-G solvation = -14082.549335 eV Core-core repulsion = 11684.259021 eV Total energy + Delta-G solvation = -2398.290314 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.61043 -38.43795 -36.27168 -34.67360 -33.81536 -30.44477 -28.50066 -28.06322 -25.65904 -23.63566 -22.62202 -18.84861 -18.44771 -17.78626 -17.54353 -16.60435 -16.30499 -15.55230 -15.08712 -14.63761 -14.50330 -14.02394 -13.72534 -13.46112 -13.28961 -13.06511 -12.97263 -12.69082 -12.61031 -12.46828 -12.28358 -12.16137 -11.57280 -11.32951 -10.73641 -10.31309 -9.40637 -8.31212 -6.47458 0.86317 1.30403 1.33746 1.45013 1.63179 1.91105 2.32938 2.96377 3.11838 3.59629 3.68924 3.98175 4.15949 4.45900 4.57202 4.69317 4.82707 4.86075 4.89572 4.95908 5.00222 5.02495 5.15160 5.27006 5.50480 5.65438 5.70510 5.90204 6.56271 6.90068 7.21634 7.51647 8.76889 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.037725 B = 0.009635 C = 0.008739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.043944 B = 2905.421006 C = 3203.312256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.102 3.898 3 N -0.293 5.293 4 N -0.453 5.453 5 C 0.281 3.719 6 C -0.546 4.546 7 H 0.044 0.956 8 C 0.008 3.992 9 N -0.926 5.926 10 Si 0.977 3.023 11 H -0.270 1.270 12 H -0.264 1.264 13 H -0.274 1.274 14 C 0.469 3.531 15 O -0.585 6.585 16 C -0.109 4.109 17 H 0.123 0.877 18 C -0.132 4.132 19 C -0.112 4.112 20 H 0.064 0.936 21 H 0.106 0.894 22 H 0.117 0.883 23 H 0.024 0.976 24 H 0.009 0.991 25 H 0.271 0.729 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.410 -13.779 4.073 18.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 N -0.099 5.099 4 N -0.269 5.269 5 C 0.160 3.840 6 C -0.584 4.584 7 H 0.063 0.937 8 C -0.191 4.191 9 N -0.565 5.565 10 Si 0.800 3.200 11 H -0.194 1.194 12 H -0.189 1.189 13 H -0.199 1.199 14 C 0.258 3.742 15 O -0.463 6.463 16 C -0.130 4.130 17 H 0.141 0.859 18 C -0.189 4.189 19 C -0.151 4.151 20 H 0.083 0.917 21 H 0.125 0.875 22 H 0.135 0.865 23 H 0.042 0.958 24 H 0.027 0.973 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.138 0.862 29 H 0.107 0.893 30 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.626 -12.587 4.050 17.606 hybrid contribution 1.164 0.008 -0.808 1.416 sum -10.462 -12.578 3.243 16.679 Atomic orbital electron populations 1.20840 0.83683 1.04372 1.05774 1.25728 0.99573 0.90513 0.93271 1.73623 0.91413 1.28783 1.16082 1.49228 1.01775 1.12553 1.63358 1.18720 0.90300 0.79705 0.95238 1.21544 1.39457 1.04046 0.93375 0.93722 1.25925 0.94548 0.94541 1.04116 1.70055 1.40520 1.08194 1.37716 0.85242 0.78237 0.78510 0.78028 1.19438 1.18898 1.19936 1.22312 0.87831 0.87015 0.77048 1.90644 1.16319 1.84263 1.55124 1.21617 0.98188 0.93799 0.99409 0.85919 1.21738 1.01928 1.04425 0.90818 1.21372 0.94467 0.97118 1.02165 0.91692 0.87514 0.86483 0.95834 0.97300 0.92007 0.93499 0.93289 0.86204 0.89284 0.82795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.41 10.17 71.24 0.72 -0.69 16 2 C 0.10 2.80 6.26 46.58 0.29 3.09 16 3 N -0.29 -12.02 11.17 -41.62 -0.46 -12.48 16 4 N -0.45 -22.79 3.46 -466.63 -1.61 -24.41 16 5 C 0.28 17.04 5.42 85.64 0.46 17.50 16 6 C -0.55 -34.38 9.38 25.60 0.24 -34.14 16 7 H 0.04 2.83 7.81 -2.91 -0.02 2.80 16 8 C 0.01 0.49 5.46 84.66 0.46 0.95 16 9 N -0.93 -58.47 13.29 21.45 0.28 -58.19 16 10 Si 0.98 47.09 29.54 68.60 2.03 49.11 16 11 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 14 C 0.47 21.91 6.80 87.74 0.60 22.51 16 15 O -0.59 -33.10 16.73 -3.09 -0.05 -33.15 16 16 C -0.11 -3.18 3.16 -11.46 -0.04 -3.21 16 17 H 0.12 3.20 8.14 -2.38 -0.02 3.18 16 18 C -0.13 -3.07 9.04 71.98 0.65 -2.42 16 19 C -0.11 -2.43 5.45 29.82 0.16 -2.27 16 20 H 0.06 1.26 8.09 -2.39 -0.02 1.24 16 21 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 23 H 0.02 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.01 0.61 7.47 -2.39 -0.02 0.59 16 25 H 0.27 15.79 8.31 -92.71 -0.77 15.01 16 26 H 0.05 1.21 7.67 -2.39 -0.02 1.19 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.15 1.57 8.02 -2.39 -0.02 1.55 16 Total: -1.00 -83.91 261.02 4.85 -79.05 By element: Atomic # 1 Polarization: -2.38 SS G_CDS: 1.12 Total: -1.26 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 3.56 Total: 1.33 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -1.79 Total: -95.08 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -0.05 Total: -33.15 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -83.91 4.85 -79.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601931961.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.482 kcal (2) G-P(sol) polarization free energy of solvation -83.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds