Wall clock time and date at job start Sun Mar 29 2020 21:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00145 * 2 1 4 4 H 1.48501 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47311 * 299.99886 * 3 2 1 6 6 H 1.48497 * 109.47172 * 60.00048 * 3 2 1 7 7 C 1.37883 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99954 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99639 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46664 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.46841 * 179.97438 * 10 9 7 12 12 C 1.34781 * 119.99958 * 180.02562 * 11 10 9 13 13 O 1.21587 * 119.99831 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00050 * 180.02562 * 12 11 10 15 15 C 1.46980 * 127.25180 * 180.02562 * 14 12 11 16 16 C 1.50584 * 107.28668 * 179.86674 * 15 14 12 17 17 C 1.30773 * 109.90599 * 0.16679 * 16 15 14 18 18 C 1.46980 * 127.25336 * 359.94730 * 14 12 11 19 19 H 0.97001 * 119.99892 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47007 * 60.00368 * 9 7 2 21 21 H 1.08994 * 109.47402 * 299.99785 * 9 7 2 22 22 H 1.09006 * 109.47078 * 60.00501 * 10 9 7 23 23 H 1.08994 * 109.47652 * 300.00542 * 10 9 7 24 24 H 0.96995 * 120.00063 * 0.02562 * 11 10 9 25 25 H 1.09002 * 109.90508 * 299.33557 * 15 14 12 26 26 H 1.09005 * 109.90396 * 60.40311 * 15 14 12 27 27 H 1.08007 * 124.94190 * 180.08577 * 16 15 14 28 28 H 1.08003 * 124.88058 * 179.97438 * 17 16 15 29 29 H 1.09004 * 109.90659 * 299.42083 * 18 14 12 30 30 H 1.09000 * 109.90483 * 60.48418 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 7 1.5126 -4.9308 0.0032 12 6 2.1865 -6.0980 0.0038 13 8 3.4024 -6.0980 0.0034 14 7 1.5126 -7.2653 0.0049 15 6 2.0809 -8.6207 0.0063 16 6 0.9279 -9.5894 0.0105 17 6 -0.2039 -8.9343 0.0081 18 6 0.0545 -7.4508 0.0066 19 1 -0.4850 0.8401 -0.0004 20 1 0.6240 -2.5575 -0.8880 21 1 0.6247 -2.5563 0.8919 22 1 2.8725 -3.6040 0.8910 23 1 2.8712 -3.6048 -0.8889 24 1 0.5427 -4.9308 0.0039 25 1 2.6875 -8.7697 -0.8870 26 1 2.6912 -8.7664 0.8976 27 1 1.0238 -10.6652 0.0136 28 1 -1.1823 -9.3918 0.0097 29 1 -0.3762 -6.9980 0.8997 30 1 -0.3783 -6.9970 -0.8849 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602291859.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:06 Heat of formation + Delta-G solvation = -7.492161 kcal Electronic energy + Delta-G solvation = -13310.359996 eV Core-core repulsion = 10913.200570 eV Total energy + Delta-G solvation = -2397.159426 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.13439 -37.80264 -34.79513 -32.89707 -31.82497 -29.47053 -28.56018 -25.08153 -23.58826 -21.01308 -19.80207 -19.67783 -17.98335 -16.37979 -16.07667 -15.35724 -14.84688 -14.41990 -14.28143 -13.41925 -12.94841 -12.90530 -12.84588 -12.56222 -12.25289 -11.52844 -11.15676 -11.04068 -10.60246 -10.32892 -9.97319 -9.76315 -9.56205 -9.23955 -8.61451 -8.41958 -8.11793 -6.08137 -4.10589 1.87766 2.81092 3.29754 3.37303 3.42922 3.54825 4.25668 4.43949 4.48358 4.69679 5.24073 5.29193 5.39466 5.41828 5.57374 5.59065 6.06430 6.10143 6.35781 6.40893 6.56132 6.78060 7.00099 7.31179 7.57731 7.64381 7.91171 8.25966 8.38085 8.93095 8.98544 9.54182 11.03674 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.074780 B = 0.005484 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.343635 B = 5104.940486 C = 5448.177804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.012 3.988 10 C 0.139 3.861 11 N -0.734 5.734 12 C 0.725 3.275 13 O -0.592 6.592 14 N -0.645 5.645 15 C 0.147 3.853 16 C -0.167 4.167 17 C -0.168 4.168 18 C 0.120 3.880 19 H 0.261 0.739 20 H 0.022 0.978 21 H 0.022 0.978 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.393 0.607 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.076 0.924 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 -16.505 0.017 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.079 0.921 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.388 5.388 12 C 0.427 3.573 13 O -0.471 6.471 14 N -0.386 5.386 15 C 0.024 3.976 16 C -0.186 4.186 17 C -0.186 4.186 18 C -0.003 4.003 19 H 0.071 0.929 20 H 0.041 0.959 21 H 0.041 0.959 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.227 0.773 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.163 0.837 28 H 0.162 0.838 29 H 0.094 0.906 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.755 -16.214 0.017 16.309 hybrid contribution -0.247 0.839 0.002 0.875 sum -2.002 -15.375 0.019 15.505 Atomic orbital electron populations 1.69966 1.06107 1.26740 1.50573 1.24996 0.94888 0.99416 0.95004 0.86451 0.80197 0.83302 0.77587 1.19550 1.20946 1.20952 1.21094 0.93330 0.90306 1.51107 0.92121 1.19334 0.94264 0.91064 0.97838 1.21635 0.95692 0.80221 1.00766 1.45530 1.09927 1.05017 1.78315 1.15352 0.84793 0.79073 0.78100 1.90898 1.11394 1.85883 1.58898 1.47268 1.06542 1.04861 1.79886 1.20467 0.95243 0.79632 1.02284 1.23441 0.94467 0.99569 1.01094 1.23337 0.99244 0.94519 1.01475 1.20778 0.82204 0.95170 1.02129 0.92923 0.95944 0.95942 0.92674 0.92662 0.77327 0.90802 0.90807 0.83681 0.83805 0.90609 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.67 7.74 -52.48 -0.41 1.27 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.17 16 10 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 11 N -0.73 -13.93 5.53 -65.22 -0.36 -14.29 16 12 C 0.72 13.94 8.54 -86.91 -0.74 13.20 16 13 O -0.59 -13.62 16.75 5.29 0.09 -13.53 16 14 N -0.64 -9.65 3.37 -181.52 -0.61 -10.26 16 15 C 0.15 1.80 6.99 -4.99 -0.03 1.77 16 16 C -0.17 -1.46 10.89 -36.02 -0.39 -1.86 16 17 C -0.17 -1.44 10.88 -36.02 -0.39 -1.83 16 18 C 0.12 1.34 6.33 -4.99 -0.03 1.31 16 19 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 20 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 23 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 24 H 0.39 6.53 7.57 -40.82 -0.31 6.22 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 28 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 263.58 15.07 3.97 3.97 Total: -1.00 -32.85 263.58 -7.44 -40.29 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -4.08 Total: 0.37 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -2.17 Total: 2.50 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -0.24 Total: -50.10 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.09 Total: -13.53 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.85 -7.44 -40.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602291859.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.798 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds