Wall clock time and date at job start Sun Mar 29 2020 21:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00145 * 2 1 4 4 H 1.48501 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47311 * 299.99886 * 3 2 1 6 6 H 1.48497 * 109.47172 * 60.00048 * 3 2 1 7 7 C 1.37883 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99954 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99639 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46664 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.46841 * 179.97438 * 10 9 7 12 12 C 1.34781 * 119.99958 * 180.02562 * 11 10 9 13 13 O 1.21587 * 119.99831 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00050 * 180.02562 * 12 11 10 15 15 C 1.46980 * 127.25180 * 180.02562 * 14 12 11 16 16 C 1.50584 * 107.28668 * 179.86674 * 15 14 12 17 17 C 1.30773 * 109.90599 * 0.16679 * 16 15 14 18 18 C 1.46980 * 127.25336 * 359.94730 * 14 12 11 19 19 H 0.97001 * 119.99892 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47007 * 60.00368 * 9 7 2 21 21 H 1.08994 * 109.47402 * 299.99785 * 9 7 2 22 22 H 1.09006 * 109.47078 * 60.00501 * 10 9 7 23 23 H 1.08994 * 109.47652 * 300.00542 * 10 9 7 24 24 H 0.96995 * 120.00063 * 0.02562 * 11 10 9 25 25 H 1.09002 * 109.90508 * 299.33557 * 15 14 12 26 26 H 1.09005 * 109.90396 * 60.40311 * 15 14 12 27 27 H 1.08007 * 124.94190 * 180.08577 * 16 15 14 28 28 H 1.08003 * 124.88058 * 179.97438 * 17 16 15 29 29 H 1.09004 * 109.90659 * 299.42083 * 18 14 12 30 30 H 1.09000 * 109.90483 * 60.48418 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 7 1.5126 -4.9308 0.0032 12 6 2.1865 -6.0980 0.0038 13 8 3.4024 -6.0980 0.0034 14 7 1.5126 -7.2653 0.0049 15 6 2.0809 -8.6207 0.0063 16 6 0.9279 -9.5894 0.0105 17 6 -0.2039 -8.9343 0.0081 18 6 0.0545 -7.4508 0.0066 19 1 -0.4850 0.8401 -0.0004 20 1 0.6240 -2.5575 -0.8880 21 1 0.6247 -2.5563 0.8919 22 1 2.8725 -3.6040 0.8910 23 1 2.8712 -3.6048 -0.8889 24 1 0.5427 -4.9308 0.0039 25 1 2.6875 -8.7697 -0.8870 26 1 2.6912 -8.7664 0.8976 27 1 1.0238 -10.6652 0.0136 28 1 -1.1823 -9.3918 0.0097 29 1 -0.3762 -6.9980 0.8997 30 1 -0.3783 -6.9970 -0.8849 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602291859.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:05 Heat of formation + Delta-G solvation = -30.181957 kcal Electronic energy + Delta-G solvation = -13311.343899 eV Core-core repulsion = 10913.200570 eV Total energy + Delta-G solvation = -2398.143330 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.42144 -39.03924 -36.60938 -34.86760 -33.09021 -31.20626 -29.57315 -26.88841 -24.93907 -22.90618 -21.21673 -20.51492 -19.27711 -18.48163 -17.31564 -16.85716 -16.52069 -15.83468 -15.83153 -14.89959 -14.59125 -14.34605 -13.94339 -13.82967 -13.31342 -13.20167 -12.95981 -12.51301 -12.29763 -12.27787 -11.71991 -11.54519 -11.27677 -10.71701 -10.60821 -10.09710 -9.30372 -8.24414 -6.34792 1.21263 1.41802 1.41991 1.50295 1.57230 2.02431 2.41025 3.01636 3.10604 3.67457 3.80884 4.37618 4.45155 4.47796 4.50122 4.60009 4.60660 4.82912 4.91419 5.13059 5.26024 5.39485 5.48625 5.56824 5.77689 5.85128 5.99761 6.16157 6.78100 6.90684 7.34620 7.45621 8.87928 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.074780 B = 0.005484 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.343635 B = 5104.940486 C = 5448.177804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.159 3.841 11 N -0.729 5.729 12 C 0.721 3.279 13 O -0.637 6.637 14 N -0.645 5.645 15 C 0.134 3.866 16 C -0.162 4.162 17 C -0.158 4.158 18 C 0.107 3.893 19 H 0.266 0.734 20 H 0.009 0.991 21 H 0.009 0.991 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.406 0.594 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.181 0.819 28 H 0.180 0.820 29 H 0.083 0.917 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.332 -17.410 0.019 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.035 3.965 11 N -0.384 5.384 12 C 0.422 3.578 13 O -0.519 6.519 14 N -0.384 5.384 15 C 0.012 3.988 16 C -0.180 4.180 17 C -0.176 4.176 18 C -0.015 4.015 19 H 0.075 0.925 20 H 0.028 0.972 21 H 0.028 0.972 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.241 0.759 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.198 0.802 28 H 0.198 0.802 29 H 0.101 0.899 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.534 -17.172 0.019 17.358 hybrid contribution -0.060 1.066 0.001 1.067 sum -2.594 -16.106 0.021 16.313 Atomic orbital electron populations 1.70063 1.07555 1.27982 1.51028 1.25866 0.95796 1.03082 0.94319 0.85372 0.78941 0.78654 0.77926 1.19001 1.20151 1.20165 1.21481 0.93624 0.91805 1.51568 0.92262 1.19130 0.94189 0.91578 0.96411 1.21145 0.94733 0.80807 0.99771 1.45219 1.10353 1.04217 1.78572 1.15434 0.84369 0.79982 0.77978 1.90856 1.13409 1.86757 1.60854 1.47279 1.08599 1.04495 1.78043 1.20741 0.97050 0.79161 1.01873 1.23559 0.92585 1.00433 1.01390 1.23543 1.00805 0.92383 1.00864 1.21116 0.79662 0.97833 1.02877 0.92497 0.97244 0.97240 0.93679 0.93663 0.75901 0.91396 0.91409 0.80217 0.80240 0.89921 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.53 13.29 21.45 0.28 -54.24 16 2 C 0.01 0.46 5.46 84.66 0.46 0.92 16 3 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.55 -30.97 9.11 25.60 0.23 -30.74 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 9 C 0.02 1.26 5.09 29.85 0.15 1.41 16 10 C 0.16 7.25 5.61 86.38 0.48 7.73 16 11 N -0.73 -27.94 5.53 -478.52 -2.65 -30.58 16 12 C 0.72 28.00 8.54 179.05 1.53 29.53 16 13 O -0.64 -29.98 16.75 -3.99 -0.07 -30.05 16 14 N -0.65 -18.90 3.37 -846.48 -2.85 -21.75 16 15 C 0.13 3.16 6.99 85.51 0.60 3.76 16 16 C -0.16 -2.32 10.89 25.84 0.28 -2.04 16 17 C -0.16 -2.16 10.88 25.84 0.28 -1.88 16 18 C 0.11 2.18 6.33 85.51 0.54 2.72 16 19 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 20 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 21 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 22 H 0.04 2.13 8.14 -2.38 -0.02 2.11 16 23 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.41 13.43 7.57 -92.71 -0.70 12.73 16 25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 28 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 29 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -70.92 263.58 1.73 -69.19 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.42 Total: 10.09 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 4.56 Total: 11.42 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -5.21 Total: -106.58 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.07 Total: -30.05 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -70.92 1.73 -69.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602291859.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.005 kcal (2) G-P(sol) polarization free energy of solvation -70.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds